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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11601 1hdi:A (1.8) BS01 AMP 2.7.2.3 GO:0004618 ... Q7SIB7 11178909
    11602 1hdk:A (1.8) BS01 PMB 3.1.1.5 GO:0002667 ... Q05315 11834744
    11603 1hdk:A (1.8) BS02 PMB 3.1.1.5 GO:0002667 ... Q05315 11834744
    11604 1hdo:A (1.15) BS01 NAP 1.3.1.-
    1.5.1.30
    2.6.99.-
    GO:0004074 ... P30043 11224564
    11605 1hdr:A (2.5) BS01 NAD 1.5.1.34 GO:0004155 ... P09417 8262916 MOAD: Kd=0.034uM
    11606 1hds:A (1.98) BS01 HEM ? GO:0004601 ... P01972 N/A
    11607 1hds:B (1.98) BS01 HEM ? GO:0004601 ... P02074 N/A
    11608 1hds:C (1.98) BS01 HEM ? GO:0004601 ... P01972 N/A
    11609 1hds:D (1.98) BS01 HEM ? GO:0004601 ... P02074 N/A
    11610 1hdx:A (2.5) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11611 1hdx:A (2.5) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11612 1hdx:A (2.5) BS03 NAD 1.1.1.105 GO:0001523 ... P00325 8201622
    11613 1hdx:B (2.5) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11614 1hdx:B (2.5) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11615 1hdx:B (2.5) BS03 NAD 1.1.1.105 GO:0001523 ... P00325 8201622
    11616 1hdx:B (2.5) BS04 CXL 1.1.1.105 GO:0001523 ... P00325 8201622
    11617 1hdy:A (2.5) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11618 1hdy:A (2.5) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11619 1hdy:A (2.5) BS03 NAD 1.1.1.105 GO:0001523 ... P00325 8201622
    11620 1hdy:A (2.5) BS04 PYZ 1.1.1.105 GO:0001523 ... P00325 8201622
    11621 1hdy:B (2.5) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11622 1hdy:B (2.5) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11623 1hdy:B (2.5) BS03 NAD 1.1.1.105 GO:0001523 ... P00325 8201622
    11624 1hdy:B (2.5) BS04 PYZ 1.1.1.105 GO:0001523 ... P00325 8201622
    11625 1hdz:A (2.5) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11626 1hdz:A (2.5) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11627 1hdz:A (2.5) BS03 NAD 1.1.1.105 GO:0001523 ... P00325 8201622
    11628 1hdz:B (2.5) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11629 1hdz:B (2.5) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 8201622
    11630 1hdz:B (2.5) BS03 NAD 1.1.1.105 GO:0001523 ... P00325 8201622
    11631 1he1:C (2.0) BS01 GDP 3.6.5.2 GO:0001764 ... P63000 11135665
    11632 1he1:C (2.0) BS02 AF3 3.6.5.2 GO:0001764 ... P63000 11135665
    11633 1he1:C (2.0) BS03 MG 3.6.5.2 GO:0001764 ... P63000 11135665
    11634 1he1:D (2.0) BS01 GDP 3.6.5.2 GO:0001764 ... P63000 11135665
    11635 1he1:D (2.0) BS02 AF3 3.6.5.2 GO:0001764 ... P63000 11135665
    11636 1he1:D (2.0) BS03 MG 3.6.5.2 GO:0001764 ... P63000 11135665
    11637 1he2:A (1.2) BS01 NAP 1.3.1.-
    1.5.1.30
    2.6.99.-
    GO:0004074 ... P30043 11224564
    11638 1he2:A (1.2) BS02 BLA 1.3.1.-
    1.5.1.30
    2.6.99.-
    GO:0004074 ... P30043 11224564
    11639 1he3:A (1.4) BS01 NAP 1.3.1.-
    1.5.1.30
    2.6.99.-
    GO:0004074 ... P30043 11224564
    11640 1he3:A (1.4) BS02 MBV 1.3.1.-
    1.5.1.30
    2.6.99.-
    GO:0004074 ... P30043 11224564
    11641 1he4:A (1.4) BS01 NAP 1.3.1.-
    1.5.1.30
    2.6.99.-
    GO:0004074 ... P30043 11224564
    11642 1he4:A (1.4) BS02 FMN 1.3.1.-
    1.5.1.30
    2.6.99.-
    GO:0004074 ... P30043 11224564
    11643 1he5:A (1.5) BS01 NAP 1.3.1.-
    1.5.1.30
    2.6.99.-
    GO:0004074 ... P30043 11224564
    11644 1he5:A (1.5) BS02 LUM 1.3.1.-
    1.5.1.30
    2.6.99.-
    GO:0004074 ... P30043 11224564
    11645 1he8:B (3.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 11136978
    11646 1he8:B (3.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 11136978
    11647 1hea:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8485129
    11648 1heb:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8485129
    11649 1hec:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8485129
    11650 1hed:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8485129
    11651 1hes:A (3.0) BS01 peptide ? GO:0006886 ... P84092 11247301
    11652 1het:A (1.15) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 11134046
    11653 1het:A (1.15) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 11134046
    11654 1het:A (1.15) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 11134046
    11655 1het:B (1.15) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 11134046
    11656 1het:B (1.15) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 11134046
    11657 1het:B (1.15) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 11134046
    11658 1heu:A (1.15) BS01 NAD 1.1.1.1 GO:0004022 ... P00327 11134046
    11659 1heu:B (1.15) BS01 NAD 1.1.1.1 GO:0004022 ... P00327 11134046
    11660 1hex:A (2.5) BS01 NAD 1.1.1.85 GO:0000287 ... Q5SIY4 7881901 MOAD: Ki=614.6uM
    11661 1hf3:A (1.95) BS01 NAD 1.1.1.1 GO:0004022 ... P00327 11134046
    11662 1hf3:B (1.95) BS01 NAD 1.1.1.1 GO:0004022 ... P00327 11134046
    11663 1hf4:A (1.45) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    11664 1hf4:A (1.45) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    11665 1hf4:A (1.45) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    11666 1hf4:B (1.45) BS01 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    11667 1hf4:B (1.45) BS02 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    11668 1hf4:B (1.45) BS03 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    11669 1hf4:B (1.45) BS04 NO3 3.2.1.17 GO:0003796 ... P00698 11418760
    11670 1hfa:A (2.0) BS01 PIO ? GO:0005543 ... O55012 11161218
    11671 1hfb:A (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    11672 1hfb:B (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    11673 1hfb:C (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    11674 1hfb:D (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    11675 1hfb:E (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    11676 1hfb:F (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    11677 1hfb:G (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    11678 1hfb:H (1.9) BS01 PEP 2.5.1.54 GO:0003849 ... P32449 12540830
    11679 1hfc:A (1.5) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 8090713
    11680 1hfc:A (1.5) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8090713
    11681 1hfc:A (1.5) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8090713
    11682 1hfc:A (1.5) BS04 PLH 3.4.24.7 GO:0004222 ... P03956 8090713
    11683 1hfe:L (1.6) BS01 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    11684 1hfe:L (1.6) BS02 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    11685 1hfe:L (1.6) BS03 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    11686 1hfe:L (1.6) BS04 PDT 1.12.7.2 GO:0005506 ... P07598 10368269
    11687 1hfe:L (1.6) BS05 CYS 1.12.7.2 GO:0005506 ... P07598 10368269
    11688 1hfe:M (1.6) BS01 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    11689 1hfe:M (1.6) BS02 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    11690 1hfe:M (1.6) BS03 SF4 1.12.7.2 GO:0005506 ... P07598 10368269
    11691 1hfe:M (1.6) BS04 PDT 1.12.7.2 GO:0005506 ... P07598 10368269
    11692 1hfe:M (1.6) BS05 CYS 1.12.7.2 GO:0005506 ... P07598 10368269
    11693 1hfe:S (1.6) BS01 ZN 1.12.7.2 GO:0005506 ... P07603 10368269
    11694 1hfe:T (1.6) BS01 ZN 1.12.7.2 GO:0005506 ... P07603 10368269
    11695 1hfp:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9627670
    11696 1hfp:A (2.1) BS02 MOT 1.5.1.3 GO:0000900 ... P00374 9627670 MOAD: Ki=1036nM
    11697 1hfq:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9627670
    11698 1hfq:A (2.1) BS02 MOT 1.5.1.3 GO:0000900 ... P00374 9627670 MOAD: Ki=2.7nM
    11699 1hfr:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9627670
    11700 1hfr:A (2.1) BS02 MOT 1.5.1.3 GO:0000900 ... P00374 9627670 MOAD: Ki=790nM
    11701 1hfs:A (1.7) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9083493
    11702 1hfs:A (1.7) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9083493
    11703 1hfs:A (1.7) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9083493
    11704 1hfs:A (1.7) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9083493
    11705 1hfs:A (1.7) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9083493
    11706 1hfs:A (1.7) BS06 L04 3.4.24.17 GO:0004222 ... P08254 9083493 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=2nM
    11707 1hfu:A (1.68) BS01 MAN 1.10.3.2 GO:0005507 ... Q9Y780 11173497
    11708 1hfu:A (1.68) BS02 CU 1.10.3.2 GO:0005507 ... Q9Y780 11173497
    11709 1hfu:A (1.68) BS03 CU 1.10.3.2 GO:0005507 ... Q9Y780 11173497
    11710 1hfu:A (1.68) BS04 CU 1.10.3.2 GO:0005507 ... Q9Y780 11173497
    11711 1hfx:A (1.9) BS01 CA 2.4.1.22 GO:0003796 ... P00713 8805552
    11712 1hfy:A (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00712 8805552
    11713 1hfy:B (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00712 8805552
    11714 1hfz:A (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00711 8805552
    11715 1hfz:B (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00711 8805552
    11716 1hfz:C (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00711 8805552
    11717 1hfz:D (2.3) BS01 CA 2.4.1.22 GO:0003796 ... P00711 8805552
    11718 1hg2:A (2.0) BS01 IP2 ? GO:0005543 ... O55012 11161218
    11719 1hg3:A (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    11720 1hg3:B (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    11721 1hg3:C (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    11722 1hg3:D (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    11723 1hg3:E (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    11724 1hg3:F (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    11725 1hg3:G (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    11726 1hg3:H (2.7) BS01 3PP 5.3.1.1 GO:0004807 ... P62003 11243785
    11727 1hg5:A (2.0) BS01 IHP ? GO:0005543 ... O55012 11161218
    11728 1hga:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    11729 1hga:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    11730 1hga:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    11731 1hga:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    11732 1hgb:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    11733 1hgb:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    11734 1hgb:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    11735 1hgb:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    11736 1hgc:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    11737 1hgc:A (2.1) BS02 OXY ? GO:0004601 ... P69905 1453464
    11738 1hgc:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    11739 1hgc:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    11740 1hgc:C (2.1) BS02 OXY ? GO:0004601 ... P69905 1453464
    11741 1hgc:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    11742 1hge:A (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=2.27, Kd=5.4mM
    11743 1hge:C (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122
    11744 1hge:E (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122
    11745 1hgg:A (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    11746 1hgg:A (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    11747 1hgg:A (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    11748 1hgg:A (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    11749 1hgg:B (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    11750 1hgg:C (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    11751 1hgg:C (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    11752 1hgg:C (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    11753 1hgg:C (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    11754 1hgg:D (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    11755 1hgg:E (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    11756 1hgg:E (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    11757 1hgg:E (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    11758 1hgg:E (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    11759 1hgg:F (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    11760 1hgh:A (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    11761 1hgh:A (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    11762 1hgh:B (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    11763 1hgh:C (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    11764 1hgh:C (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    11765 1hgh:D (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    11766 1hgh:E (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    11767 1hgh:E (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    11768 1hgh:F (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    11769 1hgi:A (2.7) BS01 ANA ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=2.68, Kd=2.1mM
    11770 1hgi:C (2.7) BS01 ANA ? GO:0019031 ... P03438 1327122
    11771 1hgi:E (2.7) BS01 ANA ? GO:0019031 ... P03438 1327122
    11772 1hgj:A (2.7) BS01 AMN ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=1.66, Kd=22mM
    11773 1hgj:C (2.7) BS01 AMN ? GO:0019031 ... P03438 1327122
    11774 1hgj:E (2.7) BS01 AMN ? GO:0019031 ... P03438 1327122
    11775 1hgx:A (1.9) BS01 5GP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P51900 8679528
    11776 1hh4:A (2.7) BS01 GDP 3.6.5.2 GO:0001764 ... P63000 11513578
    11777 1hh4:A (2.7) BS02 MG 3.6.5.2 GO:0001764 ... P63000 11513578
    11778 1hh4:B (2.7) BS01 GDP 3.6.5.2 GO:0001764 ... P63000 11513578
    11779 1hh4:B (2.7) BS02 MG 3.6.5.2 GO:0001764 ... P63000 11513578
    11780 1hh4:B (2.7) BS03 GER 3.6.5.2 GO:0001764 ... P63000 11513578
    11781 1hh4:D (2.7) BS01 GER ? GO:0001772 ... P52565 11513578
    11782 1hh4:E (2.7) BS01 GER ? GO:0001772 ... P52565 11513578
    11783 1hh6:A (2.6) BS01 peptide ? GO:0005576 ... P01837 10990450
    11784 1hh9:A (2.7) BS01 peptide ? GO:0005576 ... P01837 10990450
    11785 1hho:A (2.1) BS01 HEM ? GO:0004601 ... P69905 6644819
    11786 1hho:A (2.1) BS02 OXY ? GO:0004601 ... P69905 6644819
    11787 1hho:B (2.1) BS01 HEM ? GO:0004601 ... P68871 6644819
    11788 1hho:B (2.1) BS02 OXY ? GO:0004601 ... P68871 6644819
    11789 1hhs:A (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    11790 1hhs:B (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    11791 1hhs:C (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    11792 1hht:P (2.9) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    11793 1hht:P (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    11794 1hht:Q (2.9) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    11795 1hht:Q (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    11796 1hht:R (2.9) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    11797 1hht:R (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    11798 1hi0:P (3.0) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    11799 1hi0:P (3.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    11800 1hi0:P (3.0) BS03 GTP 2.7.7.48 GO:0000166 ... P11124 11242087

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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