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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 1ah4:A (2.0) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P80276 9195881
    802 1ah5:A (2.4) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 10089459
    803 1ahe:A (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7664122
    804 1ahe:B (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7664122
    805 1ahf:A (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7664122
    806 1ahf:A (2.3) BS02 IOP 2.6.1.1 GO:0003824 ... P00509 7664122
    807 1ahf:B (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7664122
    808 1ahg:A (2.5) BS01 TYR 2.6.1.1 GO:0003824 ... P00509 7664122
    809 1ahg:A (2.5) BS02 PLP 2.6.1.1 GO:0003824 ... P00509 7664122
    810 1ahg:B (2.5) BS01 TYR 2.6.1.1 GO:0003824 ... P00509 7664122
    811 1ahg:B (2.5) BS02 PLP 2.6.1.1 GO:0003824 ... P00509 7664122
    812 1ahh:A (2.3) BS01 NAD 1.1.1.159 GO:0005829 ... P0AET8 8672472
    813 1ahh:B (2.3) BS01 NAD 1.1.1.159 GO:0005829 ... P0AET8 8672472
    814 1ahi:A (2.3) BS01 CHO 1.1.1.159 GO:0005829 ... P0AET8 8672472
    815 1ahi:A (2.3) BS02 NAI 1.1.1.159 GO:0005829 ... P0AET8 8672472
    816 1ahi:B (2.3) BS01 CHO 1.1.1.159 GO:0005829 ... P0AET8 8672472
    817 1ahi:B (2.3) BS02 NAI 1.1.1.159 GO:0005829 ... P0AET8 8672472
    818 1ahn:A (2.6) BS01 FMN ? GO:0000166 ... P61949 9416602
    819 1ahp:A (3.0) BS01 GLC 2.4.1.1 GO:0004645 ... P00490 9145112
    820 1ahp:A (3.0) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 9145112
    821 1ahp:A (3.0) BS03 PLP 2.4.1.1 GO:0004645 ... P00490 9145112
    822 1ahp:B (3.0) BS01 GLC 2.4.1.1 GO:0004645 ... P00490 9145112
    823 1ahp:B (3.0) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 9145112
    824 1ahp:B (3.0) BS03 PLP 2.4.1.1 GO:0004645 ... P00490 9145112
    825 1ahr:A (1.8) BS01 CA ? GO:0005509 ... P62149 9195880
    826 1ahr:A (1.8) BS02 CA ? GO:0005509 ... P62149 9195880
    827 1ahr:A (1.8) BS03 CA ? GO:0005509 ... P62149 9195880
    828 1ahr:A (1.8) BS04 CA ? GO:0005509 ... P62149 9195880
    829 1ahu:A (2.7) BS01 FAA 1.1.3.38 GO:0003824 ... P56216 9261083
    830 1ahu:B (2.7) BS01 FAA 1.1.3.38 GO:0003824 ... P56216 9261083
    831 1ahv:A (3.1) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 9261083
    832 1ahv:A (3.1) BS02 NCR 1.1.3.38 GO:0003824 ... P56216 9261083
    833 1ahv:B (3.1) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 9261083
    834 1ahv:B (3.1) BS02 NCR 1.1.3.38 GO:0003824 ... P56216 9261083
    835 1ahx:A (2.0) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7664122
    836 1ahx:A (2.0) BS02 HCI 2.6.1.1 GO:0003824 ... P00509 7664122 MOAD: Kd=120uM
    PDBbind: -logKd/Ki=3.92, Kd=120uM
    837 1ahx:B (2.0) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7664122
    838 1ahx:B (2.0) BS02 HCI 2.6.1.1 GO:0003824 ... P00509 7664122 MOAD: Kd=120uM
    PDBbind: -logKd/Ki=3.92, Kd=120uM
    839 1ahy:A (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7664122
    840 1ahy:B (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7664122
    841 1ahz:A (3.3) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 9261083
    842 1ahz:A (3.3) BS02 EPT 1.1.3.38 GO:0003824 ... P56216 9261083
    843 1ahz:B (3.3) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 9261083
    844 1ai0:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    845 1ai0:D (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    846 1ai0:F (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    847 1ai0:F (-1.00) BS02 peptide ? GO:0005179 ... P01308 9235985
    848 1ai0:H (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    849 1ai0:H (-1.00) BS02 peptide ? GO:0005179 ... P01308 9235985
    850 1ai0:J (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    851 1ai0:L (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    852 1ai0:L (-1.00) BS02 peptide ? GO:0005179 ... P01308 9235985
    853 1ai1:L (2.8) BS01 peptide ? GO:0005576 ... P01837 9054968
    854 1ai2:A (1.9) BS01 NAP 1.1.1.42 GO:0000287 ... P08200 9211842 MOAD: Ki=2.7uM
    855 1ai2:A (1.9) BS02 ICA 1.1.1.42 GO:0000287 ... P08200 9211842
    856 1ai3:A (1.9) BS01 NDO 1.1.1.42 GO:0000287 ... P08200 9211842 MOAD: Ki=403uM
    857 1ai9:A (1.85) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    858 1ai9:B (1.85) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    859 1aia:A (2.2) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7819232
    860 1aia:B (2.2) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7819232
    861 1aib:A (2.8) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7819232
    862 1aib:A (2.8) BS02 AKG 2.6.1.1 GO:0003824 ... P00509 7819232
    863 1aib:B (2.8) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7819232
    864 1aib:B (2.8) BS02 AKG 2.6.1.1 GO:0003824 ... P00509 7819232
    865 1aic:A (2.4) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7819232
    866 1aic:B (2.4) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7819232
    867 1aig:L (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 9115209
    868 1aig:L (2.6) BS02 BCL ? GO:0009772 ... P0C0Y8 9115209
    869 1aig:L (2.6) BS03 BPH ? GO:0009772 ... P0C0Y8 9115209
    870 1aig:L (2.6) BS04 BPH ? GO:0009772 ... P0C0Y8 9115209
    871 1aig:L (2.6) BS05 U10 ? GO:0009772 ... P0C0Y8 9115209
    872 1aig:L (2.6) BS06 FE2 ? GO:0009772 ... P0C0Y8 9115209
    873 1aig:L (2.6) BS07 BCL ? GO:0009772 ... P0C0Y8 9115209
    874 1aig:L (2.6) BS08 U10 ? GO:0009772 ... P0C0Y8 9115209
    875 1aig:M (2.6) BS01 BCL ? GO:0009772 ... P0C0Y9 9115209
    876 1aig:M (2.6) BS02 BPH ? GO:0009772 ... P0C0Y9 9115209
    877 1aig:M (2.6) BS03 BPH ? GO:0009772 ... P0C0Y9 9115209
    878 1aig:M (2.6) BS04 FE2 ? GO:0009772 ... P0C0Y9 9115209
    879 1aig:M (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 9115209
    880 1aig:M (2.6) BS06 BCL ? GO:0009772 ... P0C0Y9 9115209
    881 1aig:M (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 9115209
    882 1aig:N (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 9115209
    883 1aig:N (2.6) BS02 BCL ? GO:0009772 ... P0C0Y8 9115209
    884 1aig:N (2.6) BS03 BCL ? GO:0009772 ... P0C0Y8 9115209
    885 1aig:N (2.6) BS04 BPH ? GO:0009772 ... P0C0Y8 9115209
    886 1aig:N (2.6) BS05 U10 ? GO:0009772 ... P0C0Y8 9115209
    887 1aig:N (2.6) BS06 FE2 ? GO:0009772 ... P0C0Y8 9115209
    888 1aig:N (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 9115209
    889 1aig:N (2.6) BS08 U10 ? GO:0009772 ... P0C0Y8 9115209
    890 1aig:O (2.6) BS01 BCL ? GO:0009772 ... P0C0Y9 9115209
    891 1aig:O (2.6) BS02 BCL ? GO:0009772 ... P0C0Y9 9115209
    892 1aig:O (2.6) BS03 BPH ? GO:0009772 ... P0C0Y9 9115209
    893 1aig:O (2.6) BS04 FE2 ? GO:0009772 ... P0C0Y9 9115209
    894 1aig:O (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 9115209
    895 1aig:O (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 9115209
    896 1aig:O (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 9115209
    897 1aii:A (1.95) BS01 CA ? GO:0001786 ... P12429 9111038
    898 1aii:A (1.95) BS02 CA ? GO:0001786 ... P12429 9111038
    899 1aii:A (1.95) BS03 CA ? GO:0001786 ... P12429 9111038
    900 1aii:A (1.95) BS04 CA ? GO:0001786 ... P12429 9111038
    901 1aii:A (1.95) BS05 CA ? GO:0001786 ... P12429 9111038
    902 1aij:L (2.2) BS01 BCL ? GO:0009772 ... P0C0Y8 9115209
    903 1aij:L (2.2) BS02 BCL ? GO:0009772 ... P0C0Y8 9115209
    904 1aij:L (2.2) BS03 BPH ? GO:0009772 ... P0C0Y8 9115209
    905 1aij:L (2.2) BS04 BPH ? GO:0009772 ... P0C0Y8 9115209
    906 1aij:L (2.2) BS05 U10 ? GO:0009772 ... P0C0Y8 9115209
    907 1aij:L (2.2) BS06 FE2 ? GO:0009772 ... P0C0Y8 9115209
    908 1aij:L (2.2) BS07 BCL ? GO:0009772 ... P0C0Y8 9115209
    909 1aij:M (2.2) BS01 BCL ? GO:0009772 ... P0C0Y9 9115209
    910 1aij:M (2.2) BS02 BPH ? GO:0009772 ... P0C0Y9 9115209
    911 1aij:M (2.2) BS03 BPH ? GO:0009772 ... P0C0Y9 9115209
    912 1aij:M (2.2) BS04 FE2 ? GO:0009772 ... P0C0Y9 9115209
    913 1aij:M (2.2) BS05 BCL ? GO:0009772 ... P0C0Y9 9115209
    914 1aij:M (2.2) BS06 BCL ? GO:0009772 ... P0C0Y9 9115209
    915 1aij:M (2.2) BS07 U10 ? GO:0009772 ... P0C0Y9 9115209
    916 1aij:R (2.2) BS01 BCL ? GO:0009772 ... P0C0Y8 9115209
    917 1aij:R (2.2) BS02 BCL ? GO:0009772 ... P0C0Y8 9115209
    918 1aij:R (2.2) BS03 BPH ? GO:0009772 ... P0C0Y8 9115209
    919 1aij:R (2.2) BS04 U10 ? GO:0009772 ... P0C0Y8 9115209
    920 1aij:R (2.2) BS05 FE2 ? GO:0009772 ... P0C0Y8 9115209
    921 1aij:R (2.2) BS06 BCL ? GO:0009772 ... P0C0Y8 9115209
    922 1aij:R (2.2) BS07 BPH ? GO:0009772 ... P0C0Y8 9115209
    923 1aij:S (2.2) BS01 BCL ? GO:0009772 ... P0C0Y9 9115209
    924 1aij:S (2.2) BS02 BPH ? GO:0009772 ... P0C0Y9 9115209
    925 1aij:S (2.2) BS03 FE2 ? GO:0009772 ... P0C0Y9 9115209
    926 1aij:S (2.2) BS04 BCL ? GO:0009772 ... P0C0Y9 9115209
    927 1aij:S (2.2) BS05 BCL ? GO:0009772 ... P0C0Y9 9115209
    928 1aij:S (2.2) BS06 BPH ? GO:0009772 ... P0C0Y9 9115209
    929 1aij:S (2.2) BS07 U10 ? GO:0009772 ... P0C0Y9 9115209
    930 1aiq:A (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 9416600
    931 1aiq:B (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 9416600
    932 1aiy:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    933 1aiy:B (-1.00) BS02 peptide ? GO:0005179 ... P01308 9235985
    934 1aiy:D (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    935 1aiy:D (-1.00) BS02 peptide ? GO:0005179 ... P01308 9235985
    936 1aiy:F (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    937 1aiy:F (-1.00) BS02 peptide ? GO:0005179 ... P01308 9235985
    938 1aiy:H (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    939 1aiy:H (-1.00) BS02 peptide ? GO:0005179 ... P01308 9235985
    940 1aiy:J (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    941 1aiy:J (-1.00) BS02 peptide ? GO:0005179 ... P01308 9235985
    942 1aiy:L (-1.00) BS01 peptide ? GO:0005179 ... P01308 9235985
    943 1aiy:L (-1.00) BS02 peptide ? GO:0005179 ... P01308 9235985
    944 1aj0:A (2.0) BS01 PH2 2.5.1.15 GO:0004156 ... P0AC13 9187658
    945 1aj0:A (2.0) BS02 SAN 2.5.1.15 GO:0004156 ... P0AC13 9187658
    946 1aj2:A (2.0) BS01 2PH 2.5.1.15 GO:0004156 ... P0AC13 9187658
    947 1aj4:A (-1.00) BS01 CA ? GO:0003009 ... P09860 9218458
    948 1aj4:A (-1.00) BS02 CA ? GO:0003009 ... P09860 9218458
    949 1aj4:A (-1.00) BS03 CA ? GO:0003009 ... P09860 9218458
    950 1aj8:A (1.9) BS01 COA 2.3.3.16 GO:0004108 ... Q53554 9254593
    951 1aj8:B (1.9) BS01 COA 2.3.3.16 GO:0004108 ... Q53554 9254593
    952 1aj9:A (2.2) BS01 PO4 ? GO:0004601 ... P69905 9761903
    953 1aj9:A (2.2) BS02 HEM ? GO:0004601 ... P69905 9761903
    954 1aj9:B (2.2) BS01 HEM ? GO:0004601 ... P68871 9761903
    955 1ajb:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8746724
    956 1ajb:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 8746724
    957 1ajb:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 8746724
    958 1ajb:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 8746724
    959 1ajb:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 8746724
    960 1ajb:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 8746724
    961 1ajc:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    962 1ajc:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    963 1ajc:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 7577993
    964 1ajc:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    965 1ajc:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    966 1ajc:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 7577993
    967 1ajd:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    968 1ajd:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    969 1ajd:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 7577993
    970 1ajd:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    971 1ajd:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7577993
    972 1ajd:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 7577993
    973 1ajg:A (1.69) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 7634074
    974 1ajh:A (1.69) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 7634074
    975 1ajs:A (1.6) BS01 PLA 2.6.1.1
    2.6.1.3    		 GO:0003824 ... P00503 9211866
    976 1ajs:B (1.6) BS01 PLA 2.6.1.1
    2.6.1.3    		 GO:0003824 ... P00503 9211866
    977 1ak0:A (1.8) BS01 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    978 1ak0:A (1.8) BS02 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    979 1ak0:A (1.8) BS03 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    980 1ak0:A (1.8) BS04 ZN 3.1.30.1 GO:0003676 ... P24289 9726413
    981 1ak0:A (1.8) BS05 THS 3.1.30.1 GO:0003676 ... P24289 9726413
    982 1aka:A (2.1) BS01 PLP 2.6.1.1
    2.6.1.7    		 GO:0004069 ... P00508 7819232
    983 1aka:B (2.1) BS01 PO4 2.6.1.1
    2.6.1.7    		 GO:0004069 ... P00508 7819232
    984 1akb:A (2.3) BS01 PPD 2.6.1.1
    2.6.1.7    		 GO:0004069 ... P00508 7819232
    985 1akc:A (2.3) BS01 PPE 2.6.1.1
    2.6.1.7    		 GO:0004069 ... P00508 7819232
    986 1akd:A (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 9357977
    987 1ake:A (2.0) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 1548697
    988 1ake:B (2.0) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 1548697
    989 1akk:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 9245419
    990 1akl:A (2.0) BS01 ZN 3.4.24.40 GO:0001869 ... Q03023 8690704
    991 1akl:A (2.0) BS02 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    992 1akl:A (2.0) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    993 1akl:A (2.0) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    994 1akl:A (2.0) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    995 1akl:A (2.0) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    996 1akl:A (2.0) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    997 1akl:A (2.0) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    998 1akl:A (2.0) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    999 1aky:A (1.63) BS01 AP5 2.7.4.3 GO:0003688 ... P07170 7670369
    1000 1aky:A (1.63) BS02 IMD 2.7.4.3 GO:0003688 ... P07170 7670369
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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