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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    68401 2ww0:H (2.8) BS01 CA ? GO:0000224 ... Q8A0N1 20081828
    68402 2ww0:H (2.8) BS02 SWA ? GO:0000224 ... Q8A0N1 20081828
    68403 2ww1:A (2.25) BS01 Z5L ? GO:0000224 ... Q8A0N1 20081828
    68404 2ww1:A (2.25) BS02 MAN ? GO:0000224 ... Q8A0N1 20081828
    68405 2ww1:B (2.25) BS01 Z5L ? GO:0000224 ... Q8A0N1 20081828
    68406 2ww1:B (2.25) BS02 MAN ? GO:0000224 ... Q8A0N1 20081828
    68407 2ww1:C (2.25) BS01 Z5L ? GO:0000224 ... Q8A0N1 20081828
    68408 2ww1:C (2.25) BS02 MAN ? GO:0000224 ... Q8A0N1 20081828
    68409 2ww1:D (2.25) BS01 Z5L ? GO:0000224 ... Q8A0N1 20081828
    68410 2ww1:D (2.25) BS02 MAN ? GO:0000224 ... Q8A0N1 20081828
    68411 2ww2:B (1.9) BS01 SWA ? GO:0000224 ... Q8A5N9 20081828 MOAD: Ki=14uM
    PDBbind: -logKd/Ki=4.85, Ki=14uM
    68412 2ww3:A (2.1) BS01 Z5L ? GO:0000224 ... Q8A0N1 20081828
    68413 2ww3:A (2.1) BS02 MAN ? GO:0000224 ... Q8A0N1 20081828
    68414 2ww3:A (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    68415 2ww3:B (2.1) BS01 Z5L ? GO:0000224 ... Q8A0N1 20081828
    68416 2ww3:B (2.1) BS02 MAN ? GO:0000224 ... Q8A0N1 20081828
    68417 2ww3:B (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    68418 2ww3:C (2.1) BS01 Z5L ? GO:0000224 ... Q8A0N1 20081828
    68419 2ww3:C (2.1) BS02 MAN ? GO:0000224 ... Q8A0N1 20081828
    68420 2ww3:C (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    68421 2ww3:D (2.1) BS01 Z5L ? GO:0000224 ... Q8A0N1 20081828
    68422 2ww3:D (2.1) BS02 MAN ? GO:0000224 ... Q8A0N1 20081828
    68423 2ww3:D (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    68424 2ww3:E (2.1) BS01 Z5L ? GO:0000224 ... Q8A0N1 20081828
    68425 2ww3:E (2.1) BS02 MAN ? GO:0000224 ... Q8A0N1 20081828
    68426 2ww3:E (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    68427 2ww3:F (2.1) BS01 Z5L ? GO:0000224 ... Q8A0N1 20081828
    68428 2ww3:F (2.1) BS02 MAN ? GO:0000224 ... Q8A0N1 20081828
    68429 2ww3:F (2.1) BS03 CA ? GO:0000224 ... Q8A0N1 20081828
    68430 2ww8:A (1.9) BS01 MG ? GO:0016020 ... A0A0H2UNT6 20152157
    68431 2ww8:A (1.9) BS02 CA ? GO:0016020 ... A0A0H2UNT6 20152157
    68432 2ww8:A (1.9) BS03 CA ? GO:0016020 ... A0A0H2UNT6 20152157
    68433 2ww9:A (8.6) BS01 peptide ? GO:0005048 ... P38353 19933108
    68434 2ww9:A (8.6) BS02 rna ? GO:0005048 ... P38353 19933108
    68435 2ww9:A (8.6) BS03 rna ? GO:0005048 ... P38353 19933108
    68436 2ww9:I (8.6) BS01 rna ? GO:0000448 ... P05740 19933108
    68437 2ww9:I (8.6) BS02 rna ? GO:0000448 ... P05740 19933108
    68438 2ww9:J (8.6) BS01 rna ? GO:0002181 ... P0CX82 19933108
    68439 2ww9:J (8.6) BS02 rna ? GO:0002181 ... P0CX82 19933108
    68440 2ww9:K (8.6) BS01 rna ? GO:0000027 ... P04456 19933108
    68441 2ww9:K (8.6) BS02 rna ? GO:0000027 ... P04456 19933108
    68442 2ww9:L (8.6) BS01 rna ? GO:0002181 ... P05743 19933108
    68443 2ww9:L (8.6) BS02 rna ? GO:0002181 ... P05743 19933108
    68444 2ww9:N (8.6) BS01 rna ? GO:0000463 ... P0CX84 19933108
    68445 2ww9:O (8.6) BS01 rna ? GO:0002181 ... P04650 19933108
    68446 2wwa:A (8.9) BS01 peptide ? GO:0005048 ... P38353 19933108
    68447 2wwa:A (8.9) BS02 rna ? GO:0005048 ... P38353 19933108
    68448 2wwa:A (8.9) BS03 rna ? GO:0005048 ... P38353 19933108
    68449 2wwa:I (8.9) BS01 rna ? GO:0000448 ... P05740 19933108
    68450 2wwa:I (8.9) BS02 rna ? GO:0000448 ... P05740 19933108
    68451 2wwa:J (8.9) BS01 rna ? GO:0002181 ... P0CX82 19933108
    68452 2wwa:J (8.9) BS02 rna ? GO:0002181 ... P0CX82 19933108
    68453 2wwa:K (8.9) BS01 rna ? GO:0000027 ... P04456 19933108
    68454 2wwa:L (8.9) BS01 rna ? GO:0002181 ... P05743 19933108
    68455 2wwa:L (8.9) BS02 rna ? GO:0002181 ... P05743 19933108
    68456 2wwa:N (8.9) BS01 rna ? GO:0000463 ... P0CX84 19933108
    68457 2wwa:O (8.9) BS01 rna ? GO:0002181 ... P04650 19933108
    68458 2wwb:A (6.48) BS01 rna ? GO:0005048 ... P38377 19933108
    68459 2wwb:A (6.48) BS02 rna ? GO:0005048 ... P38377 19933108
    68460 2wwb:I (6.48) BS01 rna ? GO:0000448 ... P05740 19933108
    68461 2wwb:I (6.48) BS02 rna ? GO:0000448 ... P05740 19933108
    68462 2wwb:J (6.48) BS01 rna N/A GO:0003723 ... N/A 19933108
    68463 2wwb:K (6.48) BS01 rna ? GO:0000027 ... P04456 19933108
    68464 2wwb:K (6.48) BS02 rna ? GO:0000027 ... P04456 19933108
    68465 2wwb:L (6.48) BS01 rna ? GO:0002181 ... P05743 19933108
    68466 2wwb:L (6.48) BS02 rna ? GO:0002181 ... P05743 19933108
    68467 2wwb:N (6.48) BS01 rna ? GO:0000463 ... P0CX84 19933108
    68468 2wwb:O (6.48) BS01 rna ? GO:0002181 ... P04650 19933108
    68469 2wwf:A (1.89) BS01 TMP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68470 2wwf:A (1.89) BS02 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68471 2wwf:B (1.89) BS01 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68472 2wwf:B (1.89) BS02 TMP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68473 2wwf:B (1.89) BS03 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68474 2wwf:C (1.89) BS01 TMP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68475 2wwf:C (1.89) BS02 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68476 2wwg:A (2.4) BS01 DGP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68477 2wwg:A (2.4) BS02 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68478 2wwg:B (2.4) BS01 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68479 2wwg:B (2.4) BS02 DGP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68480 2wwg:B (2.4) BS03 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68481 2wwg:C (2.4) BS01 DGP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68482 2wwg:C (2.4) BS02 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68483 2wwh:A (2.7) BS01 T5A 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68484 2wwh:B (2.7) BS01 T5A 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68485 2wwh:B (2.7) BS02 T5A 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68486 2wwh:C (2.7) BS01 T5A 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68487 2wwi:A (2.99) BS01 ATM 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68488 2wwi:A (2.99) BS02 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68489 2wwi:B (2.99) BS01 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68490 2wwi:B (2.99) BS02 ATM 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68491 2wwi:B (2.99) BS03 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68492 2wwi:C (2.99) BS01 ATM 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68493 2wwi:C (2.99) BS02 ADP 2.7.4.8
    2.7.4.9
    GO:0004385 ... Q8I4S1 20353400
    68494 2wwn:A (2.6) BS01 ZN 1.15.1.1 GO:0004784 ... Q66ED7 N/A
    68495 2wwn:A (2.6) BS02 ZN 1.15.1.1 GO:0004784 ... Q66ED7 N/A
    68496 2wwn:A (2.6) BS03 ZN 1.15.1.1 GO:0004784 ... Q66ED7 N/A
    68497 2wwn:B (2.6) BS01 ZN 1.15.1.1 GO:0004784 ... Q66ED7 N/A
    68498 2wwn:B (2.6) BS02 ZN 1.15.1.1 GO:0004784 ... Q66ED7 N/A
    68499 2wwo:A (2.4) BS01 ZN 1.15.1.1 GO:0004784 ... Q66ED7 N/A
    68500 2wwo:A (2.4) BS02 ZN 1.15.1.1 GO:0004784 ... Q66ED7 N/A
    68501 2wwo:A (2.4) BS03 ZN 1.15.1.1 GO:0004784 ... Q66ED7 N/A
    68502 2wwo:B (2.4) BS01 ZN 1.15.1.1 GO:0004784 ... Q66ED7 N/A
    68503 2wwo:B (2.4) BS02 ZN 1.15.1.1 GO:0004784 ... Q66ED7 N/A
    68504 2wx2:A (2.27) BS01 HEM 1.14.14.154 GO:0004497 ... Q7Z1V1 20386598
    68505 2wx2:A (2.27) BS02 TPF 1.14.14.154 GO:0004497 ... Q7Z1V1 20386598 BindingDB: IC50=880nM, Kd=2.3e+2nM
    68506 2wx2:B (2.27) BS01 HEM 1.14.14.154 GO:0004497 ... Q7Z1V1 20386598
    68507 2wx2:B (2.27) BS02 TPF 1.14.14.154 GO:0004497 ... Q7Z1V1 20386598 BindingDB: IC50=880nM, Kd=2.3e+2nM
    68508 2wx5:L (2.63) BS01 BCL ? GO:0009772 ... Q3J1A5 20112981
    68509 2wx5:L (2.63) BS02 BCL ? GO:0009772 ... Q3J1A5 20112981
    68510 2wx5:L (2.63) BS03 BPH ? GO:0009772 ... Q3J1A5 20112981
    68511 2wx5:L (2.63) BS04 BCL ? GO:0009772 ... Q3J1A5 20112981
    68512 2wx5:L (2.63) BS05 FE ? GO:0009772 ... Q3J1A5 20112981
    68513 2wx5:L (2.63) BS06 BPH ? GO:0009772 ... Q3J1A5 20112981
    68514 2wx5:L (2.63) BS07 U10 ? GO:0009772 ... Q3J1A5 20112981
    68515 2wx5:M (2.63) BS01 BCL ? GO:0009772 ... Q3J1A6 20112981
    68516 2wx5:M (2.63) BS02 BPH ? GO:0009772 ... Q3J1A6 20112981
    68517 2wx5:M (2.63) BS03 BCL ? GO:0009772 ... Q3J1A6 20112981
    68518 2wx5:M (2.63) BS04 BCL ? GO:0009772 ... Q3J1A6 20112981
    68519 2wx5:M (2.63) BS05 FE ? GO:0009772 ... Q3J1A6 20112981
    68520 2wx5:M (2.63) BS06 BPH ? GO:0009772 ... Q3J1A6 20112981
    68521 2wx5:M (2.63) BS07 SPN ? GO:0009772 ... Q3J1A6 20112981
    68522 2wx5:M (2.63) BS08 U10 ? GO:0009772 ... Q3J1A6 20112981
    68523 2wx9:A (1.37) BS01 NGE ? GO:0030288 ... P44542 31518131
    68524 2wxd:M (1.6) BS01 E18 3.2.1.147 GO:0004553 ... P29736 20124710 MOAD: ic50=3.3uM
    PDBbind: -logKd/Ki=5.48, IC50=3.3uM
    68525 2wxd:M (1.6) BS02 ZN 3.2.1.147 GO:0004553 ... P29736 20124710
    68526 2wxd:M (1.6) BS03 SO4 3.2.1.147 GO:0004553 ... P29736 20124710
    68527 2wxd:M (1.6) BS04 SO4 3.2.1.147 GO:0004553 ... P29736 20124710
    68528 2wxt:A (2.0) BS01 ZN 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68529 2wxt:A (2.0) BS02 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68530 2wxu:A (1.8) BS01 ZN 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68531 2wxu:A (1.8) BS02 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68532 2wxu:A (1.8) BS03 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68533 2wxu:A (1.8) BS04 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68534 2wxu:A (1.8) BS05 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68535 2wxv:A (2.6) BS01 WXV 2.7.11.22 GO:0000082 ... P24941 20141146
    68536 2wxv:C (2.6) BS01 WXV 2.7.11.22 GO:0000082 ... P24941 20141146 PDBbind: -logKd/Ki=8.70, IC50=2nM
    68537 2wy2:D (-1.00) BS01 PO3 2.7.1.196 GO:0005515 ... P69795 19959833
    68538 2wy6:A (3.2) BS01 ZN 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68539 2wy6:B (3.2) BS01 ZN 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68540 2wy6:B (3.2) BS02 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68541 2wy6:B (3.2) BS03 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68542 2wy6:C (3.2) BS01 ZN 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68543 2wy6:C (3.2) BS02 CA 3.1.4.3 GO:0004629 ... Q0TV31 20944240
    68544 2wya:A (1.7) BS01 HMG 2.3.3.10 GO:0001822 ... P54868 20346956
    68545 2wya:B (1.7) BS01 HMG 2.3.3.10 GO:0001822 ... P54868 20346956
    68546 2wya:C (1.7) BS01 HMG 2.3.3.10 GO:0001822 ... P54868 20346956
    68547 2wya:D (1.7) BS01 HMG 2.3.3.10 GO:0001822 ... P54868 20346956
    68548 2wyf:A (2.4) BS01 MBG ? GO:0005737 ... Q05097 20410292 PDBbind: -logKd/Ki=4.43, Kd=37uM
    BindingDB: Kd=70000nM
    68549 2wyf:A (2.4) BS02 GLA ? GO:0005737 ... Q05097 20410292 PDBbind: -logKd/Ki=4.43, Kd=37uM
    68550 2wyf:A (2.4) BS03 CA ? GO:0005737 ... Q05097 20410292
    68551 2wyf:B (2.4) BS01 CA ? GO:0005737 ... Q05097 20410292
    68552 2wyf:B (2.4) BS02 GLA ? GO:0005737 ... Q05097 20410292
    68553 2wyf:C (2.4) BS01 MBG ? GO:0005737 ... Q05097 20410292 BindingDB: Kd=70000nM
    68554 2wyf:C (2.4) BS02 GLA ? GO:0005737 ... Q05097 20410292
    68555 2wyf:C (2.4) BS03 CA ? GO:0005737 ... Q05097 20410292
    68556 2wyf:D (2.4) BS01 GLA ? GO:0005737 ... Q05097 20410292
    68557 2wyf:D (2.4) BS02 CA ? GO:0005737 ... Q05097 20410292
    68558 2wyf:E (2.4) BS01 CA ? GO:0005737 ... Q05097 20410292
    68559 2wyf:E (2.4) BS02 GLA ? GO:0005737 ... Q05097 20410292
    68560 2wyf:F (2.4) BS01 GLA ? GO:0005737 ... Q05097 20410292
    68561 2wyf:F (2.4) BS02 CA ? GO:0005737 ... Q05097 20410292
    68562 2wyf:G (2.4) BS01 GLA ? GO:0005737 ... Q05097 20410292
    68563 2wyf:G (2.4) BS02 CA ? GO:0005737 ... Q05097 20410292
    68564 2wyf:H (2.4) BS01 GLA ? GO:0005737 ... Q05097 20410292
    68565 2wyf:H (2.4) BS02 CA ? GO:0005737 ... Q05097 20410292
    68566 2wyk:A (1.5) BS01 NGE ? GO:0030288 ... P44542 31518131
    68567 2wym:A (2.6) BS01 MN 3.1.1.- GO:0005737 ... P39300 20359483
    68568 2wym:B (2.6) BS01 MN 3.1.1.- GO:0005737 ... P39300 20359483
    68569 2wym:C (2.6) BS01 MN 3.1.1.- GO:0005737 ... P39300 20359483
    68570 2wym:D (2.6) BS01 MN 3.1.1.- GO:0005737 ... P39300 20359483
    68571 2wym:E (2.6) BS01 MN 3.1.1.- GO:0005737 ... P39300 20359483
    68572 2wym:F (2.6) BS01 MN 3.1.1.- GO:0005737 ... P39300 20359483
    68573 2wyn:A (2.1) BS01 LG9 3.2.1.28 GO:0004555 ... P13482 20461849
    68574 2wyn:A (2.1) BS02 GLC 3.2.1.28 GO:0004555 ... P13482 20461849
    68575 2wyn:B (2.1) BS01 LG9 3.2.1.28 GO:0004555 ... P13482 20461849 PDBbind: -logKd/Ki=5.55, Ki=2.8uM
    68576 2wyn:B (2.1) BS02 GLC 3.2.1.28 GO:0004555 ... P13482 20461849 PDBbind: -logKd/Ki=5.55, Ki=2.8uM
    68577 2wyn:C (2.1) BS01 LG9 3.2.1.28 GO:0004555 ... P13482 20461849
    68578 2wyn:C (2.1) BS02 GLC 3.2.1.28 GO:0004555 ... P13482 20461849
    68579 2wyn:D (2.1) BS01 LG9 3.2.1.28 GO:0004555 ... P13482 20461849
    68580 2wyn:D (2.1) BS02 GLC 3.2.1.28 GO:0004555 ... P13482 20461849
    68581 2wyo:A (3.15) BS01 GSH 6.3.2.3 GO:0000287 ... Q57UN0 20045436
    68582 2wyo:B (3.15) BS01 GSH 6.3.2.3 GO:0000287 ... Q57UN0 20045436
    68583 2wyo:C (3.15) BS01 GSH 6.3.2.3 GO:0000287 ... Q57UN0 20045436
    68584 2wyo:D (3.15) BS01 GSH 6.3.2.3 GO:0000287 ... Q57UN0 20045436
    68585 2wyp:A (1.5) BS01 KDN ? GO:0030288 ... P44542 31518131
    68586 2wyt:A (1.0) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    68587 2wyt:A (1.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 20067275
    68588 2wyt:A (1.0) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 20067275
    68589 2wyt:F (1.0) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    68590 2wyt:F (1.0) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 20067275
    68591 2wyt:F (1.0) BS03 ZN 1.15.1.1 GO:0000302 ... P00441 20067275
    68592 2wyy:A (10.6) BS01 rna ? GO:0003723 ... P03521 20133572
    68593 2wyy:C (10.6) BS01 rna ? GO:0003723 ... P03521 20133572
    68594 2wyy:D (10.6) BS01 rna ? GO:0003723 ... P03521 20133572
    68595 2wyy:F (10.6) BS01 rna ? GO:0003723 ... P03521 20133572
    68596 2wyy:H (10.6) BS01 rna ? GO:0003723 ... P03521 20133572
    68597 2wyy:I (10.6) BS01 rna ? GO:0003723 ... P03521 20133572
    68598 2wyy:J (10.6) BS01 rna ? GO:0003723 ... P03521 20133572
    68599 2wyy:K (10.6) BS01 rna ? GO:0003723 ... P03521 20133572
    68600 2wyy:L (10.6) BS01 rna ? GO:0003723 ... P03521 20133572

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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