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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    63601 2uwm:B (2.31) BS01 rna ? GO:0001514 ... Q2RFK4 17502103 PDBbind: Kd=10uM
    63602 2uwm:B (2.31) BS02 rna ? GO:0001514 ... Q2RFK4 17502103 PDBbind: Kd=10uM
    63603 2uws:L (2.9) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    63604 2uws:L (2.9) BS02 BPH ? GO:0009772 ... P0C0Y8 17570397
    63605 2uws:L (2.9) BS03 UQ2 ? GO:0009772 ... P0C0Y8 17570397
    63606 2uws:L (2.9) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    63607 2uws:L (2.9) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    63608 2uws:L (2.9) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    63609 2uws:L (2.9) BS07 BPH ? GO:0009772 ... P0C0Y8 17570397
    63610 2uws:L (2.9) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    63611 2uws:M (2.9) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    63612 2uws:M (2.9) BS02 BPH ? GO:0009772 ... P0C0Y9 17570397
    63613 2uws:M (2.9) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    63614 2uws:M (2.9) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    63615 2uws:M (2.9) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    63616 2uws:M (2.9) BS06 BPH ? GO:0009772 ... P0C0Y9 17570397
    63617 2uws:M (2.9) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    63618 2uws:M (2.9) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    63619 2uwt:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    63620 2uwt:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 17570397
    63621 2uwt:L (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 17570397
    63622 2uwt:L (2.5) BS04 UQ2 ? GO:0009772 ... P0C0Y8 17570397
    63623 2uwt:L (2.5) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    63624 2uwt:L (2.5) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    63625 2uwt:L (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 17570397
    63626 2uwt:L (2.5) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    63627 2uwt:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    63628 2uwt:M (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 17570397
    63629 2uwt:M (2.5) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    63630 2uwt:M (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    63631 2uwt:M (2.5) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    63632 2uwt:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 17570397
    63633 2uwt:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    63634 2uwt:M (2.5) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    63635 2uwu:L (2.04) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    63636 2uwu:L (2.04) BS02 BPH ? GO:0009772 ... P0C0Y8 17570397
    63637 2uwu:L (2.04) BS03 UQ2 ? GO:0009772 ... P0C0Y8 17570397
    63638 2uwu:L (2.04) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    63639 2uwu:L (2.04) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    63640 2uwu:L (2.04) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    63641 2uwu:L (2.04) BS07 BPH ? GO:0009772 ... P0C0Y8 17570397
    63642 2uwu:L (2.04) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    63643 2uwu:M (2.04) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    63644 2uwu:M (2.04) BS02 BPH ? GO:0009772 ... P0C0Y9 17570397
    63645 2uwu:M (2.04) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    63646 2uwu:M (2.04) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    63647 2uwu:M (2.04) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    63648 2uwu:M (2.04) BS06 BPH ? GO:0009772 ... P0C0Y9 17570397
    63649 2uwu:M (2.04) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    63650 2uwu:M (2.04) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    63651 2uwv:L (2.13) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    63652 2uwv:L (2.13) BS02 BPH ? GO:0009772 ... P0C0Y8 17570397
    63653 2uwv:L (2.13) BS03 UQ2 ? GO:0009772 ... P0C0Y8 17570397
    63654 2uwv:L (2.13) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    63655 2uwv:L (2.13) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    63656 2uwv:L (2.13) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    63657 2uwv:L (2.13) BS07 BPH ? GO:0009772 ... P0C0Y8 17570397
    63658 2uwv:L (2.13) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    63659 2uwv:M (2.13) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    63660 2uwv:M (2.13) BS02 BPH ? GO:0009772 ... P0C0Y9 17570397
    63661 2uwv:M (2.13) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    63662 2uwv:M (2.13) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    63663 2uwv:M (2.13) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    63664 2uwv:M (2.13) BS06 BPH ? GO:0009772 ... P0C0Y9 17570397
    63665 2uwv:M (2.13) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    63666 2uwv:M (2.13) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    63667 2uww:L (2.05) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    63668 2uww:L (2.05) BS02 BPH ? GO:0009772 ... P0C0Y8 17570397
    63669 2uww:L (2.05) BS03 UQ2 ? GO:0009772 ... P0C0Y8 17570397
    63670 2uww:L (2.05) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    63671 2uww:L (2.05) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    63672 2uww:L (2.05) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    63673 2uww:L (2.05) BS07 BPH ? GO:0009772 ... P0C0Y8 17570397
    63674 2uww:L (2.05) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    63675 2uww:M (2.05) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    63676 2uww:M (2.05) BS02 BPH ? GO:0009772 ... P0C0Y9 17570397
    63677 2uww:M (2.05) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    63678 2uww:M (2.05) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    63679 2uww:M (2.05) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    63680 2uww:M (2.05) BS06 BPH ? GO:0009772 ... P0C0Y9 17570397
    63681 2uww:M (2.05) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    63682 2uww:M (2.05) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    63683 2ux1:A (1.8) BS01 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63684 2ux1:A (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63685 2ux1:B (1.8) BS01 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63686 2ux1:B (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63687 2ux1:C (1.8) BS01 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63688 2ux1:C (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63689 2ux1:D (1.8) BS01 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63690 2ux1:D (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63691 2ux1:E (1.8) BS01 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63692 2ux1:E (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63693 2ux1:F (1.8) BS01 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63694 2ux1:F (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63695 2ux1:G (1.8) BS01 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63696 2ux1:G (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63697 2ux1:H (1.8) BS01 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63698 2ux1:H (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63699 2ux1:I (1.8) BS01 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63700 2ux1:I (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63701 2ux1:J (1.8) BS01 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63702 2ux1:J (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63703 2ux1:K (1.8) BS01 CA 1.16.-.- GO:0005737 ... P0CB53 18552126
    63704 2ux1:K (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63705 2ux1:K (1.8) BS03 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63706 2ux1:L (1.8) BS01 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63707 2ux1:L (1.8) BS02 ZN 1.16.-.- GO:0005737 ... P0CB53 18552126
    63708 2ux3:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    63709 2ux3:L (2.5) BS02 BPH ? GO:0009772 ... P0C0Y8 17570397
    63710 2ux3:L (2.5) BS03 UQ2 ? GO:0009772 ... P0C0Y8 17570397
    63711 2ux3:L (2.5) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    63712 2ux3:L (2.5) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    63713 2ux3:L (2.5) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    63714 2ux3:L (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 17570397
    63715 2ux3:L (2.5) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    63716 2ux3:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    63717 2ux3:M (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 17570397
    63718 2ux3:M (2.5) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    63719 2ux3:M (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    63720 2ux3:M (2.5) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    63721 2ux3:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 17570397
    63722 2ux3:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    63723 2ux3:M (2.5) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    63724 2ux4:L (2.51) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    63725 2ux4:L (2.51) BS02 BPH ? GO:0009772 ... P0C0Y8 17570397
    63726 2ux4:L (2.51) BS03 UQ2 ? GO:0009772 ... P0C0Y8 17570397
    63727 2ux4:L (2.51) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    63728 2ux4:L (2.51) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    63729 2ux4:L (2.51) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    63730 2ux4:L (2.51) BS07 BPH ? GO:0009772 ... P0C0Y8 17570397
    63731 2ux4:L (2.51) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    63732 2ux4:M (2.51) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    63733 2ux4:M (2.51) BS02 BPH ? GO:0009772 ... P0C0Y9 17570397
    63734 2ux4:M (2.51) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    63735 2ux4:M (2.51) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    63736 2ux4:M (2.51) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    63737 2ux4:M (2.51) BS06 BPH ? GO:0009772 ... P0C0Y9 17570397
    63738 2ux4:M (2.51) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    63739 2ux4:M (2.51) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    63740 2ux5:L (2.21) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    63741 2ux5:L (2.21) BS02 BPH ? GO:0009772 ... P0C0Y8 17570397
    63742 2ux5:L (2.21) BS03 UQ2 ? GO:0009772 ... P0C0Y8 17570397
    63743 2ux5:L (2.21) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    63744 2ux5:L (2.21) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    63745 2ux5:L (2.21) BS06 FE ? GO:0009772 ... P0C0Y8 17570397
    63746 2ux5:L (2.21) BS07 BPH ? GO:0009772 ... P0C0Y8 17570397
    63747 2ux5:L (2.21) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    63748 2ux5:M (2.21) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    63749 2ux5:M (2.21) BS02 BPH ? GO:0009772 ... P0C0Y9 17570397
    63750 2ux5:M (2.21) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    63751 2ux5:M (2.21) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    63752 2ux5:M (2.21) BS05 FE ? GO:0009772 ... P0C0Y9 17570397
    63753 2ux5:M (2.21) BS06 BPH ? GO:0009772 ... P0C0Y9 17570397
    63754 2ux5:M (2.21) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    63755 2ux5:M (2.21) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    63756 2ux6:A (1.3) BS01 CU ? GO:0005507 ... P19567 17685636
    63757 2ux7:A (1.3) BS01 CU ? GO:0005507 ... P19567 17685636
    63758 2uxa:A (2.38) BS01 GLU ? GO:0015276 ... P19491 16815334
    63759 2uxa:A (2.38) BS02 ZN ? GO:0015276 ... P19491 16815334
    63760 2uxa:B (2.38) BS01 GLU ? GO:0015276 ... P19491 16815334
    63761 2uxa:B (2.38) BS02 ZN ? GO:0015276 ... P19491 16815334
    63762 2uxa:B (2.38) BS03 ZN ? GO:0015276 ... P19491 16815334
    63763 2uxa:C (2.38) BS01 GLU ? GO:0015276 ... P19491 16815334
    63764 2uxa:C (2.38) BS02 ZN ? GO:0015276 ... P19491 16815334
    63765 2uxb:B (3.1) BS01 rna ? GO:0003735 ... P80371 17416634
    63766 2uxb:C (3.1) BS01 rna ? GO:0003676 ... P80372 17416634
    63767 2uxb:D (3.1) BS01 rna ? GO:0003723 ... P80373 17416634
    63768 2uxb:D (3.1) BS02 ZN ? GO:0003723 ... P80373 17416634
    63769 2uxb:E (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 17416634
    63770 2uxb:F (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 17416634
    63771 2uxb:G (3.1) BS01 rna ? GO:0000028 ... P17291 17416634
    63772 2uxb:H (3.1) BS01 rna ? GO:0003735 ... P0DOY9 17416634
    63773 2uxb:I (3.1) BS01 rna ? GO:0000049 ... P80374 17416634
    63774 2uxb:J (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 17416634
    63775 2uxb:K (3.1) BS01 rna ? GO:0003735 ... P80376 17416634
    63776 2uxb:L (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 17416634
    63777 2uxb:M (3.1) BS01 rna ? GO:0000049 ... P80377 17416634
    63778 2uxb:N (3.1) BS01 rna ? GO:0003735 ... P0DOY6 17416634
    63779 2uxb:N (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 17416634
    63780 2uxb:O (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 17416634
    63781 2uxb:P (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 17416634
    63782 2uxb:Q (3.1) BS01 rna ? GO:0003735 ... P0DOY7 17416634
    63783 2uxb:R (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 17416634
    63784 2uxb:S (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 17416634
    63785 2uxb:T (3.1) BS01 rna ? GO:0003723 ... P80380 17416634
    63786 2uxc:B (2.9) BS01 rna ? GO:0003735 ... P80371 17416634
    63787 2uxc:B (2.9) BS02 MG ? GO:0003735 ... P80371 17416634
    63788 2uxc:C (2.9) BS01 rna ? GO:0003676 ... P80372 17416634
    63789 2uxc:D (2.9) BS01 rna ? GO:0003723 ... P80373 17416634
    63790 2uxc:D (2.9) BS02 MG ? GO:0003723 ... P80373 17416634
    63791 2uxc:E (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 17416634
    63792 2uxc:F (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 17416634
    63793 2uxc:F (2.9) BS02 MG ? GO:0003735 ... Q5SLP8 17416634
    63794 2uxc:G (2.9) BS01 rna ? GO:0000028 ... P17291 17416634
    63795 2uxc:H (2.9) BS01 rna ? GO:0003735 ... P0DOY9 17416634
    63796 2uxc:I (2.9) BS01 rna ? GO:0000049 ... P80374 17416634
    63797 2uxc:J (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 17416634
    63798 2uxc:J (2.9) BS02 MG ? GO:0000049 ... Q5SHN7 17416634
    63799 2uxc:K (2.9) BS01 rna ? GO:0003735 ... P80376 17416634
    63800 2uxc:K (2.9) BS02 MG ? GO:0003735 ... P80376 17416634
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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