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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    593401 9bct:B (2.5) BS04 ZN N/A GO:0000428 ... Q5JE32 N/A
    593402 9bct:C (2.5) BS01 dna N/A GO:0000428 ... Q5JE34 N/A
    593403 9bct:C (2.5) BS02 dna N/A GO:0000428 ... Q5JE34 N/A
    593404 9bct:E (2.5) BS01 rna N/A GO:0000428 ... Q5JIY4 N/A
    593405 9bct:I (2.5) BS01 ZN N/A GO:0000428 ... Q5JIY5 N/A
    593406 9bct:N (2.5) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    593407 9bct:P (2.5) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    593408 9bcu:A (2.2) BS01 dna N/A GO:0000287 ... Q5JE33 N/A
    593409 9bcu:A (2.2) BS02 dna N/A GO:0000287 ... Q5JE33 N/A
    593410 9bcu:A (2.2) BS03 rna N/A GO:0000287 ... Q5JE33 N/A
    593411 9bcu:A (2.2) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    593412 9bcu:A (2.2) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    593413 9bcu:A (2.2) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    593414 9bcu:B (2.2) BS01 dna N/A GO:0000428 ... Q5JE32 N/A
    593415 9bcu:B (2.2) BS02 dna N/A GO:0000428 ... Q5JE32 N/A
    593416 9bcu:B (2.2) BS03 rna N/A GO:0000428 ... Q5JE32 N/A
    593417 9bcu:B (2.2) BS04 ZN N/A GO:0000428 ... Q5JE32 N/A
    593418 9bcu:C (2.2) BS01 dna N/A GO:0000428 ... Q5JE34 N/A
    593419 9bcu:E (2.2) BS01 rna N/A GO:0000428 ... Q5JIY4 N/A
    593420 9bcu:N (2.2) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    593421 9bcu:P (2.2) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    593422 9bcz:A (1.99) BS01 CA 3.1.4.11 GO:0004435 ... Q2VRL0 N/A
    593423 9bdl:AL02 (2.8) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    593424 9bdl:AL02 (2.8) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    593425 9bdl:AL03 (2.8) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    593426 9bdl:AL04 (2.8) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    593427 9bdl:AL04 (2.8) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    593428 9bdl:AL05 (2.8) BS01 rna N/A GO:0000027 ... P19949 38718836
    593429 9bdl:AL05 (2.8) BS02 rna N/A GO:0000027 ... P19949 38718836
    593430 9bdl:AL07 (2.8) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    593431 9bdl:AL07 (2.8) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    593432 9bdl:AL09 (2.8) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    593433 9bdl:AL10 (2.8) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    593434 9bdl:AL10 (2.8) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    593435 9bdl:AL10 (2.8) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    593436 9bdl:AL11 (2.8) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    593437 9bdl:AL11 (2.8) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    593438 9bdl:AL11 (2.8) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    593439 9bdl:AL13 (2.8) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    593440 9bdl:AL13 (2.8) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    593441 9bdl:AL15 (2.8) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    593442 9bdl:AL15 (2.8) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    593443 9bdl:AL16 (2.8) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    593444 9bdl:AL18 (2.8) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    593445 9bdl:AL19 (2.8) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    593446 9bdl:AL19 (2.8) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    593447 9bdl:AL21 (2.8) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    593448 9bdl:AL21 (2.8) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    593449 9bdl:AL23 (2.8) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    593450 9bdl:AL26 (2.8) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    593451 9bdl:AL26 (2.8) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    593452 9bdl:AL27 (2.8) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    593453 9bdl:AL28 (2.8) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    593454 9bdl:AL29 (2.8) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    593455 9bdl:AL32 (2.8) BS01 rna N/A GO:0005737 ... G1TUN8 38718836
    593456 9bdl:AL33 (2.8) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    593457 9bdl:AL34 (2.8) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    593458 9bdl:AL35 (2.8) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    593459 9bdl:AL35 (2.8) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    593460 9bdl:AL36 (2.8) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    593461 9bdl:AL38 (2.8) BS01 rna N/A GO:0003735 ... G1U001 38718836
    593462 9bdl:AL39 (2.8) BS01 rna N/A GO:0005840 ... G1TTN1 38718836
    593463 9bdl:AL39 (2.8) BS02 rna N/A GO:0005840 ... G1TTN1 38718836
    593464 9bdl:AL43 (2.8) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    593465 9bdl:ALNW (2.8) BS01 rna N/A GO:0005737 ... G1U7L1 38718836
    593466 9bdl:ARAC (2.8) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    593467 9bdl:AS03 (2.8) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    593468 9bdl:AS04 (2.8) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    593469 9bdl:AS05 (2.8) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    593470 9bdl:AS06 (2.8) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    593471 9bdl:AS07 (2.8) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    593472 9bdl:AS08 (2.8) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    593473 9bdl:AS08 (2.8) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    593474 9bdl:AS09 (2.8) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    593475 9bdl:AS11 (2.8) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    593476 9bdl:AS13 (2.8) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    593477 9bdl:AS13 (2.8) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    593478 9bdl:AS16 (2.8) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    593479 9bdl:AS17 (2.8) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    593480 9bdl:AS18 (2.8) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    593481 9bdl:AS19 (2.8) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    593482 9bdl:AS22 (2.8) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    593483 9bdl:AS23 (2.8) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    593484 9bdl:AS24 (2.8) BS01 rna N/A GO:0005840 ... G1T3D8 38718836
    593485 9bdl:AS27 (2.8) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    593486 9bdl:AS28 (2.8) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    593487 9bdl:AS29 (2.8) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    593488 9bdn:AL02 (3.1) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    593489 9bdn:AL02 (3.1) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    593490 9bdn:AL03 (3.1) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    593491 9bdn:AL04 (3.1) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    593492 9bdn:AL04 (3.1) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    593493 9bdn:AL05 (3.1) BS01 rna N/A GO:0000027 ... P19949 38718836
    593494 9bdn:AL05 (3.1) BS02 rna N/A GO:0000027 ... P19949 38718836
    593495 9bdn:AL07 (3.1) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    593496 9bdn:AL07 (3.1) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    593497 9bdn:AL09 (3.1) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    593498 9bdn:AL10 (3.1) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    593499 9bdn:AL10 (3.1) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    593500 9bdn:AL10 (3.1) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    593501 9bdn:AL11 (3.1) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    593502 9bdn:AL11 (3.1) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    593503 9bdn:AL11 (3.1) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    593504 9bdn:AL12 (3.1) BS01 rna N/A GO:0003723 ... G1SMR7 38718836
    593505 9bdn:AL13 (3.1) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    593506 9bdn:AL13 (3.1) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    593507 9bdn:AL15 (3.1) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    593508 9bdn:AL15 (3.1) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    593509 9bdn:AL16 (3.1) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    593510 9bdn:AL18 (3.1) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    593511 9bdn:AL19 (3.1) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    593512 9bdn:AL19 (3.1) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    593513 9bdn:AL21 (3.1) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    593514 9bdn:AL21 (3.1) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    593515 9bdn:AL23 (3.1) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    593516 9bdn:AL26 (3.1) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    593517 9bdn:AL26 (3.1) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    593518 9bdn:AL27 (3.1) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    593519 9bdn:AL28 (3.1) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    593520 9bdn:AL29 (3.1) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    593521 9bdn:AL32 (3.1) BS01 rna N/A GO:0005737 ... G1TUN8 38718836
    593522 9bdn:AL33 (3.1) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    593523 9bdn:AL34 (3.1) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    593524 9bdn:AL35 (3.1) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    593525 9bdn:AL35 (3.1) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    593526 9bdn:AL36 (3.1) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    593527 9bdn:AL38 (3.1) BS01 rna N/A GO:0003735 ... G1U001 38718836
    593528 9bdn:AL39 (3.1) BS01 rna N/A GO:0005840 ... G1TTN1 38718836
    593529 9bdn:AL39 (3.1) BS02 rna N/A GO:0005840 ... G1TTN1 38718836
    593530 9bdn:AL43 (3.1) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    593531 9bdn:ALNW (3.1) BS01 rna N/A GO:0005737 ... G1U7L1 38718836
    593532 9bdn:ARAC (3.1) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    593533 9bdn:AS03 (3.1) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    593534 9bdn:AS04 (3.1) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    593535 9bdn:AS05 (3.1) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    593536 9bdn:AS06 (3.1) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    593537 9bdn:AS07 (3.1) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    593538 9bdn:AS08 (3.1) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    593539 9bdn:AS08 (3.1) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    593540 9bdn:AS09 (3.1) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    593541 9bdn:AS11 (3.1) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    593542 9bdn:AS13 (3.1) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    593543 9bdn:AS16 (3.1) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    593544 9bdn:AS17 (3.1) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    593545 9bdn:AS18 (3.1) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    593546 9bdn:AS19 (3.1) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    593547 9bdn:AS22 (3.1) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    593548 9bdn:AS23 (3.1) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    593549 9bdn:AS24 (3.1) BS01 rna N/A GO:0005840 ... G1T3D8 38718836
    593550 9bdn:AS27 (3.1) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    593551 9bdn:AS28 (3.1) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    593552 9bdn:AS29 (3.1) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    593553 9bdp:AL02 (3.7) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    593554 9bdp:AL02 (3.7) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    593555 9bdp:AL03 (3.7) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    593556 9bdp:AL04 (3.7) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    593557 9bdp:AL04 (3.7) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    593558 9bdp:AL05 (3.7) BS01 rna N/A GO:0000027 ... P19949 38718836
    593559 9bdp:AL05 (3.7) BS02 rna N/A GO:0000027 ... P19949 38718836
    593560 9bdp:AL07 (3.7) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    593561 9bdp:AL07 (3.7) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    593562 9bdp:AL09 (3.7) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    593563 9bdp:AL10 (3.7) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    593564 9bdp:AL10 (3.7) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    593565 9bdp:AL10 (3.7) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    593566 9bdp:AL11 (3.7) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    593567 9bdp:AL11 (3.7) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    593568 9bdp:AL11 (3.7) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    593569 9bdp:AL12 (3.7) BS01 rna N/A GO:0003723 ... G1SMR7 38718836
    593570 9bdp:AL12 (3.7) BS02 rna N/A GO:0003723 ... G1SMR7 38718836
    593571 9bdp:AL13 (3.7) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    593572 9bdp:AL13 (3.7) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    593573 9bdp:AL15 (3.7) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    593574 9bdp:AL15 (3.7) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    593575 9bdp:AL16 (3.7) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    593576 9bdp:AL18 (3.7) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    593577 9bdp:AL19 (3.7) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    593578 9bdp:AL19 (3.7) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    593579 9bdp:AL21 (3.7) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    593580 9bdp:AL21 (3.7) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    593581 9bdp:AL23 (3.7) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    593582 9bdp:AL23 (3.7) BS02 rna N/A GO:0000122 ... G1T6D1 38718836
    593583 9bdp:AL26 (3.7) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    593584 9bdp:AL26 (3.7) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    593585 9bdp:AL27 (3.7) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    593586 9bdp:AL28 (3.7) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    593587 9bdp:AL29 (3.7) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    593588 9bdp:AL32 (3.7) BS01 rna N/A GO:0005737 ... G1TUN8 38718836
    593589 9bdp:AL33 (3.7) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    593590 9bdp:AL34 (3.7) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    593591 9bdp:AL35 (3.7) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    593592 9bdp:AL35 (3.7) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    593593 9bdp:AL36 (3.7) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    593594 9bdp:AL38 (3.7) BS01 rna N/A GO:0003735 ... G1U001 38718836
    593595 9bdp:AL39 (3.7) BS01 rna N/A GO:0005840 ... G1TTN1 38718836
    593596 9bdp:AL39 (3.7) BS02 rna N/A GO:0005840 ... G1TTN1 38718836
    593597 9bdp:AL43 (3.7) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    593598 9bdp:ALNW (3.7) BS01 rna N/A GO:0005737 ... G1U7L1 38718836
    593599 9bdp:ARAC (3.7) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    593600 9bdp:AS03 (3.7) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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