Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 2950 2951 2952 2953 2954 2955 2956 2957 2958 2959 2960 2961 2962 2963 2964 2965 2966 2967 2968 2969 2970 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    591801 8y0u:Lj (3.59) BS02 rna ? GO:0000448 ... P49166 38698775
    591802 8y0u:Lj (3.59) BS03 ZN ? GO:0000448 ... P49166 38698775
    591803 8y0u:Lk (3.59) BS01 rna ? GO:0002181 ... P49167 38698775
    591804 8y0u:Ll (3.59) BS01 rna ? GO:0002181 ... P04650 38698775
    591805 8y0u:Ll (3.59) BS02 rna ? GO:0002181 ... P04650 38698775
    591806 8y0u:Lm (3.59) BS01 rna ? GO:0000027 ... P0CH08 38698775
    591807 8y0u:Lm (3.59) BS02 ZN ? GO:0000027 ... P0CH08 38698775
    591808 8y0u:Lo (3.59) BS01 rna ? GO:0002181 ... P0CX27 38698775
    591809 8y0u:Lo (3.59) BS02 ZN ? GO:0002181 ... P0CX27 38698775
    591810 8y0u:Lp (3.59) BS01 rna ? GO:0002181 ... P0CX25 38698775
    591811 8y0u:Lp (3.59) BS02 ZN ? GO:0002181 ... P0CX25 38698775
    591812 8y0u:P0 (3.59) BS01 rna ? GO:0000027 ... P05317 38698775
    591813 8y0u:P2 (3.59) BS01 rna ? GO:0000027 ... P0CX53 38698775
    591814 8y0u:SA (3.59) BS01 rna ? GO:0000028 ... P32905 38698775
    591815 8y0u:SB (3.59) BS01 rna ? GO:0000462 ... P33442 38698775
    591816 8y0u:SB (3.59) BS02 rna ? GO:0000462 ... P33442 38698775
    591817 8y0u:SC (3.59) BS01 rna ? GO:0000054 ... P25443 38698775
    591818 8y0u:SE (3.59) BS01 rna ? GO:0002181 ... P0CX35 38698775
    591819 8y0u:SE (3.59) BS02 MG ? GO:0002181 ... P0CX35 38698775
    591820 8y0u:SG (3.59) BS01 rna ? GO:0000462 ... P0CX37 38698775
    591821 8y0u:SH (3.59) BS01 rna ? GO:0002181 ... P26786 38698775
    591822 8y0u:SI (3.59) BS01 rna ? GO:0000462 ... P0CX39 38698775
    591823 8y0u:SI (3.59) BS02 rna ? GO:0000462 ... P0CX39 38698775
    591824 8y0u:SJ (3.59) BS01 rna ? GO:0000462 ... O13516 38698775
    591825 8y0u:SL (3.59) BS01 rna ? GO:0000028 ... P0CX47 38698775
    591826 8y0u:SN (3.59) BS01 rna ? GO:0000462 ... P05756 38698775
    591827 8y0u:SN (3.59) BS02 rna ? GO:0000462 ... P05756 38698775
    591828 8y0u:SO (3.59) BS01 rna ? GO:0000028 ... P39516 38698775
    591829 8y0u:SP (3.59) BS01 rna ? GO:0000028 ... Q01855 38698775
    591830 8y0u:SQ (3.59) BS01 rna ? GO:0000462 ... P0CX51 38698775
    591831 8y0u:SQ (3.59) BS02 MG ? GO:0000462 ... P0CX51 38698775
    591832 8y0u:ST (3.59) BS01 rna ? GO:0000028 ... P07280 38698775
    591833 8y0u:ST (3.59) BS02 MG ? GO:0000028 ... P07280 38698775
    591834 8y0u:ST (3.59) BS03 MG ? GO:0000028 ... P07280 38698775
    591835 8y0u:SU (3.59) BS01 rna ? GO:0000462 ... P38701 38698775
    591836 8y0u:SW (3.59) BS01 rna ? GO:0002181 ... P0C0W1 38698775
    591837 8y0u:SX (3.59) BS01 rna ? GO:0000462 ... P0CX29 38698775
    591838 8y0u:SY (3.59) BS01 rna ? GO:0000462 ... P0CX31 38698775
    591839 8y0u:SZ (3.59) BS01 rna ? GO:0002181 ... Q3E792 38698775
    591840 8y0u:Sa (3.59) BS01 rna ? GO:0000054 ... P39939 38698775
    591841 8y0u:Sb (3.59) BS01 rna ? GO:0000028 ... P35997 38698775
    591842 8y0u:Sc (3.59) BS01 rna ? GO:0000028 ... Q3E7X9 38698775
    591843 8y0u:Sd (3.59) BS01 rna ? GO:0002181 ... P41057 38698775
    591844 8y0u:Sd (3.59) BS02 MG ? GO:0002181 ... P41057 38698775
    591845 8y0u:Sd (3.59) BS03 ZN ? GO:0002181 ... P41057 38698775
    591846 8y0u:Se (3.59) BS01 rna ? GO:0002181 ... P0CX33 38698775
    591847 8y0u:Sf (3.59) BS01 rna ? GO:0000028 ... P05759 38698775
    591848 8y0u:Sf (3.59) BS02 ZN ? GO:0000028 ... P05759 38698775
    591849 8y0u:s (3.59) BS01 rna ? GO:0000723 ... P39015 38698775
    591850 8y0w:5 (3.4) BS01 rna ? GO:0003723 ... P63241 38698775
    591851 8y0w:CB (3.4) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    591852 8y0w:CB (3.4) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    591853 8y0w:LA (3.4) BS01 rna ? GO:0002181 ... P62917 38698775
    591854 8y0w:LA (3.4) BS02 MG ? GO:0002181 ... P62917 38698775
    591855 8y0w:LB (3.4) BS01 rna ? GO:0002181 ... P39023 38698775
    591856 8y0w:LC (3.4) BS01 rna ? GO:0002181 ... P36578 38698775
    591857 8y0w:LC (3.4) BS02 rna ? GO:0002181 ... P36578 38698775
    591858 8y0w:LD (3.4) BS01 rna ? GO:0000027 ... P46777 38698775
    591859 8y0w:LD (3.4) BS02 rna ? GO:0000027 ... P46777 38698775
    591860 8y0w:LE (3.4) BS01 rna ? GO:0000027 ... Q02878 38698775
    591861 8y0w:LF (3.4) BS01 rna ? GO:0000463 ... P18124 38698775
    591862 8y0w:LF (3.4) BS02 rna ? GO:0000463 ... P18124 38698775
    591863 8y0w:LG (3.4) BS01 rna ? GO:0000470 ... P62424 38698775
    591864 8y0w:LG (3.4) BS02 rna ? GO:0000470 ... P62424 38698775
    591865 8y0w:LH (3.4) BS01 rna ? GO:0002181 ... P32969 38698775
    591866 8y0w:LI (3.4) BS01 rna ? GO:0000027 ... Q96L21 38698775
    591867 8y0w:LI (3.4) BS02 rna ? GO:0000027 ... Q96L21 38698775
    591868 8y0w:LJ (3.4) BS01 rna ? GO:0000027 ... P62913 38698775
    591869 8y0w:LJ (3.4) BS02 rna ? GO:0000027 ... P62913 38698775
    591870 8y0w:LL (3.4) BS01 rna ? GO:0001824 ... P26373 38698775
    591871 8y0w:LL (3.4) BS02 rna ? GO:0001824 ... P26373 38698775
    591872 8y0w:LM (3.4) BS01 rna ? GO:0002181 ... P50914 38698775
    591873 8y0w:LN (3.4) BS01 rna ? GO:0002181 ... P61313 38698775
    591874 8y0w:LN (3.4) BS02 rna ? GO:0002181 ... P61313 38698775
    591875 8y0w:LO (3.4) BS01 rna ? GO:0002181 ... P40429 38698775
    591876 8y0w:LP (3.4) BS01 rna ? GO:0002181 ... P18621 38698775
    591877 8y0w:LP (3.4) BS02 rna ? GO:0002181 ... P18621 38698775
    591878 8y0w:LQ (3.4) BS01 rna ? GO:0002181 ... Q07020 38698775
    591879 8y0w:LR (3.4) BS01 rna ? GO:0002181 ... P84098 38698775
    591880 8y0w:LR (3.4) BS02 rna ? GO:0002181 ... P84098 38698775
    591881 8y0w:LS (3.4) BS01 rna ? GO:0002181 ... Q02543 38698775
    591882 8y0w:LS (3.4) BS02 rna ? GO:0002181 ... Q02543 38698775
    591883 8y0w:LT (3.4) BS01 rna ? GO:0002181 ... P46778 38698775
    591884 8y0w:LT (3.4) BS02 rna ? GO:0002181 ... P46778 38698775
    591885 8y0w:LU (3.4) BS01 rna ? GO:0002181 ... P35268 38698775
    591886 8y0w:LV (3.4) BS01 rna ? GO:0000122 ... P62829 38698775
    591887 8y0w:LW (3.4) BS01 rna ? GO:0000027 ... P83731 38698775
    591888 8y0w:LX (3.4) BS01 rna ? GO:0000027 ... P62750 38698775
    591889 8y0w:LX (3.4) BS02 rna ? GO:0000027 ... P62750 38698775
    591890 8y0w:LY (3.4) BS01 rna ? GO:0002181 ... P61254 38698775
    591891 8y0w:LY (3.4) BS02 rna ? GO:0002181 ... P61254 38698775
    591892 8y0w:LZ (3.4) BS01 rna ? GO:0002181 ... P61353 38698775
    591893 8y0w:La (3.4) BS01 rna ? GO:0002181 ... P46776 38698775
    591894 8y0w:Lb (3.4) BS01 rna ? GO:0002181 ... P47914 38698775
    591895 8y0w:Lc (3.4) BS01 rna ? GO:0002181 ... P62888 38698775
    591896 8y0w:Ld (3.4) BS01 rna ? GO:0002181 ... P62899 38698775
    591897 8y0w:Le (3.4) BS01 rna ? GO:0002181 ... P62910 38698775
    591898 8y0w:Le (3.4) BS02 MG ? GO:0002181 ... P62910 38698775
    591899 8y0w:Lf (3.4) BS01 rna ? GO:0000049 ... P18077 38698775
    591900 8y0w:Lg (3.4) BS01 rna ? GO:0002181 ... P49207 38698775
    591901 8y0w:Lg (3.4) BS02 MG ? GO:0002181 ... P49207 38698775
    591902 8y0w:Lg (3.4) BS03 ZN ? GO:0002181 ... P49207 38698775
    591903 8y0w:Lh (3.4) BS01 rna ? GO:0000463 ... P42766 38698775
    591904 8y0w:Lh (3.4) BS02 rna ? GO:0000463 ... P42766 38698775
    591905 8y0w:Li (3.4) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    591906 8y0w:Lj (3.4) BS01 rna ? GO:0002181 ... P61927 38698775
    591907 8y0w:Lj (3.4) BS02 rna ? GO:0002181 ... P61927 38698775
    591908 8y0w:Lj (3.4) BS03 ZN ? GO:0002181 ... P61927 38698775
    591909 8y0w:Lk (3.4) BS01 rna ? GO:0001501 ... P63173 38698775
    591910 8y0w:Ll (3.4) BS01 rna ? GO:0002181 ... P62891 38698775
    591911 8y0w:Ll (3.4) BS02 rna ? GO:0002181 ... P62891 38698775
    591912 8y0w:Lm (3.4) BS01 rna ? GO:0002181 ... P62987 38698775
    591913 8y0w:Lm (3.4) BS02 ZN ? GO:0002181 ... P62987 38698775
    591914 8y0w:Lo (3.4) BS01 rna ? GO:0002181 ... P83881 38698775
    591915 8y0w:Lo (3.4) BS02 ZN ? GO:0002181 ... P83881 38698775
    591916 8y0w:Lp (3.4) BS01 rna ? GO:0002181 ... P61513 38698775
    591917 8y0w:Lp (3.4) BS02 ZN ? GO:0002181 ... P61513 38698775
    591918 8y0w:Lr (3.4) BS01 rna ? GO:0002181 ... P46779 38698775
    591919 8y0w:S (3.4) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    591920 8y0w:SA (3.4) BS01 rna ? GO:0000028 ... P08865 38698775
    591921 8y0w:SB (3.4) BS01 rna ? GO:0002181 ... P61247 38698775
    591922 8y0w:SC (3.4) BS01 rna ? GO:0002181 ... P15880 38698775
    591923 8y0w:SD (3.4) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    591924 8y0w:SE (3.4) BS01 rna ? GO:0002181 ... P62701 38698775
    591925 8y0w:SF (3.4) BS01 rna ? GO:0000028 ... P46782 38698775
    591926 8y0w:SG (3.4) BS01 rna ? GO:0000082 ... P62753 38698775
    591927 8y0w:SH (3.4) BS01 rna ? GO:0001843 ... P62081 38698775
    591928 8y0w:SI (3.4) BS01 rna ? GO:0000462 ... P62241 38698775
    591929 8y0w:SI (3.4) BS02 rna ? GO:0000462 ... P62241 38698775
    591930 8y0w:SJ (3.4) BS01 rna ? GO:0002181 ... P46781 38698775
    591931 8y0w:SK (3.4) BS01 rna ? GO:0002181 ... P46783 38698775
    591932 8y0w:SL (3.4) BS01 rna ? GO:0002181 ... P62280 38698775
    591933 8y0w:SN (3.4) BS01 rna ? GO:0002181 ... P62277 38698775
    591934 8y0w:SO (3.4) BS01 rna ? GO:0000028 ... P62263 38698775
    591935 8y0w:SP (3.4) BS01 rna ? GO:0000028 ... P62841 38698775
    591936 8y0w:SQ (3.4) BS01 rna ? GO:0000462 ... P62249 38698775
    591937 8y0w:SR (3.4) BS01 rna ? GO:0002181 ... P08708 38698775
    591938 8y0w:SS (3.4) BS01 rna ? GO:0002181 ... P62269 38698775
    591939 8y0w:ST (3.4) BS01 rna ? GO:0000028 ... P39019 38698775
    591940 8y0w:SU (3.4) BS01 rna ? GO:0002181 ... P60866 38698775
    591941 8y0w:SW (3.4) BS01 rna ? GO:0002181 ... P62244 38698775
    591942 8y0w:SX (3.4) BS01 rna ? GO:0002181 ... P62266 38698775
    591943 8y0w:SY (3.4) BS01 rna ? GO:0002181 ... P62847 38698775
    591944 8y0w:SZ (3.4) BS01 rna ? GO:0002181 ... P62851 38698775
    591945 8y0w:Sa (3.4) BS01 rna ? GO:0002181 ... P62854 38698775
    591946 8y0w:Sb (3.4) BS01 rna ? GO:0000028 ... P42677 38698775
    591947 8y0w:Sc (3.4) BS01 rna ? GO:0000028 ... P62857 38698775
    591948 8y0w:Sd (3.4) BS01 rna ? GO:0002181 ... P62273 38698775
    591949 8y0w:Se (3.4) BS01 rna ? GO:0003735 ... P62861 38698775
    591950 8y0w:Sg (3.4) BS01 rna ? GO:0001891 ... P63244 38698775
    591951 8y0x:CB (3.3) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    591952 8y0x:CB (3.3) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    591953 8y0x:LA (3.3) BS01 rna ? GO:0002181 ... P62917 38698775
    591954 8y0x:LA (3.3) BS02 MG ? GO:0002181 ... P62917 38698775
    591955 8y0x:LB (3.3) BS01 rna ? GO:0002181 ... P39023 38698775
    591956 8y0x:LC (3.3) BS01 rna ? GO:0002181 ... P36578 38698775
    591957 8y0x:LC (3.3) BS02 rna ? GO:0002181 ... P36578 38698775
    591958 8y0x:LD (3.3) BS01 rna ? GO:0000027 ... P46777 38698775
    591959 8y0x:LD (3.3) BS02 rna ? GO:0000027 ... P46777 38698775
    591960 8y0x:LE (3.3) BS01 rna ? GO:0000027 ... Q02878 38698775
    591961 8y0x:LF (3.3) BS01 rna ? GO:0000463 ... P18124 38698775
    591962 8y0x:LF (3.3) BS02 rna ? GO:0000463 ... P18124 38698775
    591963 8y0x:LG (3.3) BS01 rna ? GO:0000470 ... P62424 38698775
    591964 8y0x:LG (3.3) BS02 rna ? GO:0000470 ... P62424 38698775
    591965 8y0x:LH (3.3) BS01 rna ? GO:0002181 ... P32969 38698775
    591966 8y0x:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 38698775
    591967 8y0x:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 38698775
    591968 8y0x:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 38698775
    591969 8y0x:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 38698775
    591970 8y0x:LL (3.3) BS01 rna ? GO:0001824 ... P26373 38698775
    591971 8y0x:LL (3.3) BS02 rna ? GO:0001824 ... P26373 38698775
    591972 8y0x:LM (3.3) BS01 rna ? GO:0002181 ... P50914 38698775
    591973 8y0x:LN (3.3) BS01 rna ? GO:0002181 ... P61313 38698775
    591974 8y0x:LN (3.3) BS02 rna ? GO:0002181 ... P61313 38698775
    591975 8y0x:LO (3.3) BS01 rna ? GO:0002181 ... P40429 38698775
    591976 8y0x:LP (3.3) BS01 rna ? GO:0002181 ... P18621 38698775
    591977 8y0x:LP (3.3) BS02 rna ? GO:0002181 ... P18621 38698775
    591978 8y0x:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 38698775
    591979 8y0x:LR (3.3) BS01 rna ? GO:0002181 ... P84098 38698775
    591980 8y0x:LR (3.3) BS02 rna ? GO:0002181 ... P84098 38698775
    591981 8y0x:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 38698775
    591982 8y0x:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 38698775
    591983 8y0x:LT (3.3) BS01 rna ? GO:0002181 ... P46778 38698775
    591984 8y0x:LT (3.3) BS02 rna ? GO:0002181 ... P46778 38698775
    591985 8y0x:LU (3.3) BS01 rna ? GO:0002181 ... P35268 38698775
    591986 8y0x:LV (3.3) BS01 rna ? GO:0000122 ... P62829 38698775
    591987 8y0x:LW (3.3) BS01 rna ? GO:0000027 ... P83731 38698775
    591988 8y0x:LX (3.3) BS01 rna ? GO:0000027 ... P62750 38698775
    591989 8y0x:LX (3.3) BS02 rna ? GO:0000027 ... P62750 38698775
    591990 8y0x:LY (3.3) BS01 rna ? GO:0002181 ... P61254 38698775
    591991 8y0x:LY (3.3) BS02 rna ? GO:0002181 ... P61254 38698775
    591992 8y0x:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 38698775
    591993 8y0x:La (3.3) BS01 rna ? GO:0002181 ... P46776 38698775
    591994 8y0x:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 38698775
    591995 8y0x:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 38698775
    591996 8y0x:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 38698775
    591997 8y0x:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38698775
    591998 8y0x:Le (3.3) BS02 MG ? GO:0002181 ... P62910 38698775
    591999 8y0x:Lf (3.3) BS01 rna ? GO:0000049 ... P18077 38698775
    592000 8y0x:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38698775
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218