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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    591201 8xsz:Lb (3.2) BS01 rna N/A GO:0002181 ... P47914 38942792
    591202 8xsz:Lc (3.2) BS01 rna N/A GO:0002181 ... P62888 38942792
    591203 8xsz:Lc (3.2) BS02 rna N/A GO:0002181 ... P62888 38942792
    591204 8xsz:Lc (3.2) BS03 peptide N/A GO:0002181 ... P62888 38942792
    591205 8xsz:Ld (3.2) BS01 rna N/A GO:0002181 ... P62899 38942792
    591206 8xsz:Le (3.2) BS01 rna N/A GO:0002181 ... P62910 38942792
    591207 8xsz:Le (3.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    591208 8xsz:Lf (3.2) BS01 rna N/A GO:0000049 ... P18077 38942792
    591209 8xsz:Lg (3.2) BS01 rna N/A GO:0002181 ... P49207 38942792
    591210 8xsz:Lg (3.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    591211 8xsz:Lg (3.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    591212 8xsz:Lh (3.2) BS01 rna N/A GO:0000463 ... P42766 38942792
    591213 8xsz:Lh (3.2) BS02 rna N/A GO:0000463 ... P42766 38942792
    591214 8xsz:Li (3.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    591215 8xsz:Lj (3.2) BS01 rna N/A GO:0002181 ... P61927 38942792
    591216 8xsz:Lj (3.2) BS02 rna N/A GO:0002181 ... P61927 38942792
    591217 8xsz:Lj (3.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    591218 8xsz:Lk (3.2) BS01 rna N/A GO:0001501 ... P63173 38942792
    591219 8xsz:Ll (3.2) BS01 rna N/A GO:0002181 ... P62891 38942792
    591220 8xsz:Ll (3.2) BS02 rna N/A GO:0002181 ... P62891 38942792
    591221 8xsz:Lm (3.2) BS01 rna N/A GO:0002181 ... P62987 38942792
    591222 8xsz:Lm (3.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    591223 8xsz:Lo (3.2) BS01 rna N/A GO:0002181 ... P83881 38942792
    591224 8xsz:Lo (3.2) BS02 rna N/A GO:0002181 ... P83881 38942792
    591225 8xsz:Lo (3.2) BS03 ZN N/A GO:0002181 ... P83881 38942792
    591226 8xsz:Lp (3.2) BS01 rna N/A GO:0002181 ... P61513 38942792
    591227 8xsz:Lp (3.2) BS02 rna N/A GO:0002181 ... P61513 38942792
    591228 8xsz:Lp (3.2) BS03 ZN N/A GO:0002181 ... P61513 38942792
    591229 8xsz:Lr (3.2) BS01 rna N/A GO:0002181 ... P46779 38942792
    591230 8xsz:Ls (3.2) BS01 rna N/A GO:0000027 ... P05388 38942792
    591231 8xsz:Lt (3.2) BS01 rna N/A GO:0002181 ... P30050 38942792
    591232 8xsz:SA (3.2) BS01 rna N/A GO:0000028 ... P08865 38942792
    591233 8xsz:SB (3.2) BS01 rna N/A GO:0002181 ... P61247 38942792
    591234 8xsz:SB (3.2) BS02 rna N/A GO:0002181 ... P61247 38942792
    591235 8xsz:SC (3.2) BS01 rna N/A GO:0002181 ... P15880 38942792
    591236 8xsz:SD (3.2) BS01 rna N/A GO:0000977 ... P23396 38942792
    591237 8xsz:SE (3.2) BS01 rna N/A GO:0002181 ... P62701 38942792
    591238 8xsz:SF (3.2) BS01 rna N/A GO:0000028 ... P46782 38942792
    591239 8xsz:SG (3.2) BS01 rna N/A GO:0000082 ... P62753 38942792
    591240 8xsz:SH (3.2) BS01 rna N/A GO:0001843 ... P62081 38942792
    591241 8xsz:SI (3.2) BS01 rna N/A GO:0000462 ... P62241 38942792
    591242 8xsz:SI (3.2) BS02 MG N/A GO:0000462 ... P62241 38942792
    591243 8xsz:SI (3.2) BS03 MG N/A GO:0000462 ... P62241 38942792
    591244 8xsz:SJ (3.2) BS01 rna N/A GO:0002181 ... P46781 38942792
    591245 8xsz:SK (3.2) BS01 rna N/A GO:0002181 ... P46783 38942792
    591246 8xsz:SL (3.2) BS01 rna N/A GO:0002181 ... P62280 38942792
    591247 8xsz:SM (3.2) BS01 rna N/A GO:0002181 ... P25398 38942792
    591248 8xsz:SM (3.2) BS02 ZN N/A GO:0002181 ... P25398 38942792
    591249 8xsz:SN (3.2) BS01 rna N/A GO:0002181 ... P62277 38942792
    591250 8xsz:SN (3.2) BS02 rna N/A GO:0002181 ... P62277 38942792
    591251 8xsz:SO (3.2) BS01 rna N/A GO:0000028 ... P62263 38942792
    591252 8xsz:SP (3.2) BS01 rna N/A GO:0000028 ... P62841 38942792
    591253 8xsz:SP (3.2) BS02 rna N/A GO:0000028 ... P62841 38942792
    591254 8xsz:SQ (3.2) BS01 rna N/A GO:0000462 ... P62249 38942792
    591255 8xsz:SR (3.2) BS01 rna N/A GO:0002181 ... P08708 38942792
    591256 8xsz:SS (3.2) BS01 rna N/A GO:0002181 ... P62269 38942792
    591257 8xsz:ST (3.2) BS01 rna N/A GO:0000028 ... P39019 38942792
    591258 8xsz:SU (3.2) BS01 rna N/A GO:0002181 ... P60866 38942792
    591259 8xsz:SW (3.2) BS01 rna N/A GO:0002181 ... P62244 38942792
    591260 8xsz:SX (3.2) BS01 rna N/A GO:0002181 ... P62266 38942792
    591261 8xsz:SY (3.2) BS01 rna N/A GO:0002181 ... P62847 38942792
    591262 8xsz:SZ (3.2) BS01 rna N/A GO:0002181 ... P62851 38942792
    591263 8xsz:Sa (3.2) BS01 rna N/A GO:0002181 ... P62854 38942792
    591264 8xsz:Sb (3.2) BS01 rna N/A GO:0000028 ... P42677 38942792
    591265 8xsz:Sc (3.2) BS01 rna N/A GO:0000028 ... P62857 38942792
    591266 8xsz:Sd (3.2) BS01 rna N/A GO:0002181 ... P62273 38942792
    591267 8xsz:Sf (3.2) BS01 rna N/A GO:0002181 ... P62979 38942792
    591268 8xsz:Sg (3.2) BS01 rna N/A GO:0001891 ... P63244 38942792
    591269 8xt0:L3 (3.2) BS01 rna N/A GO:0005515 ... Q96EL3 38942792
    591270 8xt0:L4 (3.2) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    591271 8xt0:L6 (3.2) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    591272 8xt0:L8 (3.2) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    591273 8xt0:LB (3.2) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    591274 8xt0:LB (3.2) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    591275 8xt0:LC (3.2) BS01 rna N/A GO:0003723 ... P09001 38942792
    591276 8xt0:LD (3.2) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    591277 8xt0:LI (3.2) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    591278 8xt0:LJ (3.2) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    591279 8xt0:LK (3.2) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    591280 8xt0:LM (3.2) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    591281 8xt0:LN (3.2) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    591282 8xt0:LO (3.2) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    591283 8xt0:LP (3.2) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    591284 8xt0:LQ (3.2) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    591285 8xt0:LR (3.2) BS01 rna N/A GO:0005737 ... A8K9D2 38942792
    591286 8xt0:LR (3.2) BS02 rna N/A GO:0005737 ... A8K9D2 38942792
    591287 8xt0:LS (3.2) BS01 rna N/A GO:0003735 ... P49406 38942792
    591288 8xt0:LT (3.2) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    591289 8xt0:LU (3.2) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    591290 8xt0:LV (3.2) BS01 rna N/A GO:0005739 ... E7ESL0 38942792
    591291 8xt0:LW (3.2) BS01 rna N/A GO:0001650 ... Q16540 38942792
    591292 8xt0:LX (3.2) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    591293 8xt0:La (3.2) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    591294 8xt0:Lb (3.2) BS01 rna N/A GO:0003723 ... Q13084 38942792
    591295 8xt0:Ld (3.2) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    591296 8xt0:Lf (3.2) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    591297 8xt0:Lf (3.2) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    591298 8xt0:Lg (3.2) BS01 rna N/A GO:0005739 ... O75394 38942792
    591299 8xt0:Lh (3.2) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    591300 8xt0:Li (3.2) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    591301 8xt0:Lj (3.2) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    591302 8xt0:Lj (3.2) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    591303 8xt0:Lk (3.2) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    591304 8xt0:Ll (3.2) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    591305 8xt0:Ll (3.2) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    591306 8xt0:Ln (3.2) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    591307 8xt0:Lo (3.2) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    591308 8xt0:Lp (3.2) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    591309 8xt0:Lq (3.2) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    591310 8xt0:Lr (3.2) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    591311 8xt0:Lu (3.2) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    591312 8xt0:Lv (3.2) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    591313 8xt0:Lv (3.2) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    591314 8xt0:Lw (3.2) BS01 rna N/A GO:0003735 ... Q13405 38942792
    591315 8xt0:Ly (3.2) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    591316 8xt0:SB (3.2) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    591317 8xt0:SB (3.2) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    591318 8xt0:SE (3.2) BS01 rna N/A GO:0003723 ... P82675 38942792
    591319 8xt0:SF (3.2) BS01 rna N/A GO:0003735 ... P82932 38942792
    591320 8xt0:SG (3.2) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    591321 8xt0:SI (3.2) BS01 rna N/A GO:0003723 ... P82933 38942792
    591322 8xt0:SJ (3.2) BS01 rna N/A GO:0003674 ... P82664 38942792
    591323 8xt0:SK (3.2) BS01 rna N/A GO:0003723 ... P82912 38942792
    591324 8xt0:SL (3.2) BS01 rna N/A GO:0003723 ... O15235 38942792
    591325 8xt0:SN (3.2) BS01 rna N/A GO:0003723 ... O60783 38942792
    591326 8xt0:SO (3.2) BS01 rna N/A GO:0003723 ... P82914 38942792
    591327 8xt0:SP (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    591328 8xt0:SQ (3.2) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    591329 8xt0:SR (3.2) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    591330 8xt0:SS (3.2) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    591331 8xt0:SS (3.2) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    591332 8xt0:ST (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    591333 8xt0:SW (3.2) BS01 rna N/A GO:0003723 ... P82921 38942792
    591334 8xt0:SY (3.2) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    591335 8xt0:SZ (3.2) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    591336 8xt0:Sa (3.2) BS01 rna N/A GO:0003735 ... P82663 38942792
    591337 8xt0:Sa (3.2) BS02 ZN N/A GO:0003735 ... P82663 38942792
    591338 8xt0:Sb (3.2) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    591339 8xt0:Sc (3.2) BS01 rna N/A GO:0000049 ... Q92552 38942792
    591340 8xt0:Se (3.2) BS01 rna N/A GO:0003723 ... P51398 38942792
    591341 8xt0:Se (3.2) BS02 GDP N/A GO:0003723 ... P51398 38942792
    591342 8xt0:Sf (3.2) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    591343 8xt0:Si (3.2) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    591344 8xt0:Sj (3.2) BS01 rna N/A GO:0003735 ... P82930 38942792
    591345 8xt0:Sk (3.2) BS01 rna N/A GO:0003723 ... P82673 38942792
    591346 8xt0:Sm (3.2) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    591347 8xt0:Sn (3.2) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    591348 8xt0:Sn (3.2) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    591349 8xt1:L3 (3.1) BS01 rna N/A GO:0005515 ... Q96EL3 38942792
    591350 8xt1:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    591351 8xt1:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    591352 8xt1:L8 (3.1) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    591353 8xt1:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    591354 8xt1:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792
    591355 8xt1:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    591356 8xt1:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    591357 8xt1:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    591358 8xt1:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    591359 8xt1:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    591360 8xt1:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    591361 8xt1:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    591362 8xt1:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    591363 8xt1:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    591364 8xt1:LR (3.1) BS01 rna N/A GO:0005737 ... A8K9D2 38942792
    591365 8xt1:LR (3.1) BS02 rna N/A GO:0005737 ... A8K9D2 38942792
    591366 8xt1:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    591367 8xt1:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    591368 8xt1:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    591369 8xt1:LV (3.1) BS01 rna N/A GO:0005739 ... E7ESL0 38942792
    591370 8xt1:LW (3.1) BS01 rna N/A GO:0001650 ... Q16540 38942792
    591371 8xt1:LX (3.1) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    591372 8xt1:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    591373 8xt1:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    591374 8xt1:Ld (3.1) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    591375 8xt1:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    591376 8xt1:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    591377 8xt1:Lg (3.1) BS01 rna N/A GO:0005739 ... O75394 38942792
    591378 8xt1:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    591379 8xt1:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    591380 8xt1:Lj (3.1) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    591381 8xt1:Lj (3.1) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    591382 8xt1:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    591383 8xt1:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    591384 8xt1:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    591385 8xt1:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    591386 8xt1:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    591387 8xt1:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    591388 8xt1:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    591389 8xt1:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    591390 8xt1:Lu (3.1) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    591391 8xt1:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    591392 8xt1:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    591393 8xt1:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    591394 8xt1:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    591395 8xt1:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    591396 8xt1:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    591397 8xt2:L4 (3.3) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    591398 8xt2:L6 (3.3) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    591399 8xt2:L8 (3.3) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    591400 8xt2:LB (3.3) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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