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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    591001 8xsx:Ll (2.4) BS02 rna N/A GO:0002181 ... P62891 38942792
    591002 8xsx:Lm (2.4) BS01 rna N/A GO:0002181 ... P62987 38942792
    591003 8xsx:Lm (2.4) BS02 ZN N/A GO:0002181 ... P62987 38942792
    591004 8xsx:Lo (2.4) BS01 rna N/A GO:0002181 ... P83881 38942792
    591005 8xsx:Lo (2.4) BS02 rna N/A GO:0002181 ... P83881 38942792
    591006 8xsx:Lo (2.4) BS03 ZN N/A GO:0002181 ... P83881 38942792
    591007 8xsx:Lp (2.4) BS01 rna N/A GO:0002181 ... P61513 38942792
    591008 8xsx:Lp (2.4) BS02 ZN N/A GO:0002181 ... P61513 38942792
    591009 8xsx:Lr (2.4) BS01 rna N/A GO:0002181 ... P46779 38942792
    591010 8xsx:Ls (2.4) BS01 rna N/A GO:0000027 ... P05388 38942792
    591011 8xsx:Lz (2.4) BS01 rna N/A GO:0002181 ... P62906 38942792
    591012 8xsx:SA (2.4) BS01 rna N/A GO:0000028 ... P08865 38942792
    591013 8xsx:SB (2.4) BS01 rna N/A GO:0002181 ... P61247 38942792
    591014 8xsx:SC (2.4) BS01 rna N/A GO:0002181 ... P15880 38942792
    591015 8xsx:SD (2.4) BS01 rna N/A GO:0000977 ... P23396 38942792
    591016 8xsx:SE (2.4) BS01 rna N/A GO:0002181 ... P62701 38942792
    591017 8xsx:SF (2.4) BS01 rna N/A GO:0000028 ... P46782 38942792
    591018 8xsx:SG (2.4) BS01 rna N/A GO:0000082 ... P62753 38942792
    591019 8xsx:SH (2.4) BS01 rna N/A GO:0001843 ... P62081 38942792
    591020 8xsx:SI (2.4) BS01 rna N/A GO:0000462 ... P62241 38942792
    591021 8xsx:SI (2.4) BS02 rna N/A GO:0000462 ... P62241 38942792
    591022 8xsx:SJ (2.4) BS01 rna N/A GO:0002181 ... P46781 38942792
    591023 8xsx:SK (2.4) BS01 rna N/A GO:0002181 ... P46783 38942792
    591024 8xsx:SL (2.4) BS01 rna N/A GO:0002181 ... P62280 38942792
    591025 8xsx:SM (2.4) BS01 rna N/A GO:0002181 ... P25398 38942792
    591026 8xsx:SN (2.4) BS01 rna N/A GO:0002181 ... P62277 38942792
    591027 8xsx:SN (2.4) BS02 rna N/A GO:0002181 ... P62277 38942792
    591028 8xsx:SO (2.4) BS01 rna N/A GO:0000028 ... P62263 38942792
    591029 8xsx:SP (2.4) BS01 rna N/A GO:0000028 ... P62841 38942792
    591030 8xsx:SQ (2.4) BS01 rna N/A GO:0000462 ... P62249 38942792
    591031 8xsx:SR (2.4) BS01 rna N/A GO:0002181 ... P08708 38942792
    591032 8xsx:SS (2.4) BS01 rna N/A GO:0002181 ... P62269 38942792
    591033 8xsx:ST (2.4) BS01 rna N/A GO:0000028 ... P39019 38942792
    591034 8xsx:SU (2.4) BS01 rna N/A GO:0002181 ... P60866 38942792
    591035 8xsx:SW (2.4) BS01 rna N/A GO:0002181 ... P62244 38942792
    591036 8xsx:SX (2.4) BS01 rna N/A GO:0002181 ... P62266 38942792
    591037 8xsx:SY (2.4) BS01 rna N/A GO:0002181 ... P62847 38942792
    591038 8xsx:SZ (2.4) BS01 rna N/A GO:0002181 ... P62851 38942792
    591039 8xsx:Sa (2.4) BS01 rna N/A GO:0002181 ... P62854 38942792
    591040 8xsx:Sa (2.4) BS02 ZN N/A GO:0002181 ... P62854 38942792
    591041 8xsx:Sb (2.4) BS01 rna N/A GO:0000028 ... P42677 38942792
    591042 8xsx:Sc (2.4) BS01 rna N/A GO:0000028 ... P62857 38942792
    591043 8xsx:Sd (2.4) BS01 rna N/A GO:0002181 ... P62273 38942792
    591044 8xsx:Sf (2.4) BS01 rna N/A GO:0002181 ... P62979 38942792
    591045 8xsx:Sg (2.4) BS01 rna N/A GO:0001891 ... P63244 38942792
    591046 8xsy:CA (3.0) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    591047 8xsy:CE (3.0) BS01 rna N/A GO:0003713 ... Q96CT7 38942792
    591048 8xsy:LA (3.0) BS01 rna N/A GO:0002181 ... P62917 38942792
    591049 8xsy:LA (3.0) BS02 rna N/A GO:0002181 ... P62917 38942792
    591050 8xsy:LA (3.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    591051 8xsy:LB (3.0) BS01 rna N/A GO:0002181 ... P39023 38942792
    591052 8xsy:LC (3.0) BS01 rna N/A GO:0002181 ... P36578 38942792
    591053 8xsy:LC (3.0) BS02 rna N/A GO:0002181 ... P36578 38942792
    591054 8xsy:LD (3.0) BS01 rna N/A GO:0000027 ... P46777 38942792
    591055 8xsy:LD (3.0) BS02 rna N/A GO:0000027 ... P46777 38942792
    591056 8xsy:LE (3.0) BS01 rna N/A GO:0000027 ... Q02878 38942792
    591057 8xsy:LF (3.0) BS01 rna N/A GO:0000463 ... P18124 38942792
    591058 8xsy:LF (3.0) BS02 rna N/A GO:0000463 ... P18124 38942792
    591059 8xsy:LG (3.0) BS01 rna N/A GO:0000470 ... P62424 38942792
    591060 8xsy:LG (3.0) BS02 rna N/A GO:0000470 ... P62424 38942792
    591061 8xsy:LH (3.0) BS01 rna N/A GO:0002181 ... P32969 38942792
    591062 8xsy:LI (3.0) BS01 rna N/A GO:0000027 ... P27635 38942792
    591063 8xsy:LI (3.0) BS02 rna N/A GO:0000027 ... P27635 38942792
    591064 8xsy:LJ (3.0) BS01 rna N/A GO:0000027 ... P62913 38942792
    591065 8xsy:LJ (3.0) BS02 rna N/A GO:0000027 ... P62913 38942792
    591066 8xsy:LL (3.0) BS01 rna N/A GO:0001824 ... P26373 38942792
    591067 8xsy:LL (3.0) BS02 rna N/A GO:0001824 ... P26373 38942792
    591068 8xsy:LM (3.0) BS01 rna N/A GO:0002181 ... P50914 38942792
    591069 8xsy:LN (3.0) BS01 rna N/A GO:0002181 ... P61313 38942792
    591070 8xsy:LN (3.0) BS02 rna N/A GO:0002181 ... P61313 38942792
    591071 8xsy:LO (3.0) BS01 rna N/A GO:0002181 ... P40429 38942792
    591072 8xsy:LP (3.0) BS01 rna N/A GO:0002181 ... P18621 38942792
    591073 8xsy:LP (3.0) BS02 rna N/A GO:0002181 ... P18621 38942792
    591074 8xsy:LQ (3.0) BS01 rna N/A GO:0002181 ... Q07020 38942792
    591075 8xsy:LR (3.0) BS01 rna N/A GO:0002181 ... P84098 38942792
    591076 8xsy:LR (3.0) BS02 rna N/A GO:0002181 ... P84098 38942792
    591077 8xsy:LS (3.0) BS01 rna N/A GO:0002181 ... Q02543 38942792
    591078 8xsy:LS (3.0) BS02 rna N/A GO:0002181 ... Q02543 38942792
    591079 8xsy:LT (3.0) BS01 rna N/A GO:0002181 ... P46778 38942792
    591080 8xsy:LT (3.0) BS02 rna N/A GO:0002181 ... P46778 38942792
    591081 8xsy:LU (3.0) BS01 rna N/A GO:0002181 ... P35268 38942792
    591082 8xsy:LV (3.0) BS01 rna N/A GO:0000122 ... P62829 38942792
    591083 8xsy:LW (3.0) BS01 rna N/A GO:0000027 ... P83731 38942792
    591084 8xsy:LW (3.0) BS02 rna N/A GO:0000027 ... P83731 38942792
    591085 8xsy:LX (3.0) BS01 rna N/A GO:0000027 ... P62750 38942792
    591086 8xsy:LX (3.0) BS02 rna N/A GO:0000027 ... P62750 38942792
    591087 8xsy:LY (3.0) BS01 rna N/A GO:0002181 ... P61254 38942792
    591088 8xsy:LY (3.0) BS02 rna N/A GO:0002181 ... P61254 38942792
    591089 8xsy:LZ (3.0) BS01 rna N/A GO:0002181 ... P61353 38942792
    591090 8xsy:La (3.0) BS01 rna N/A GO:0002181 ... P46776 38942792
    591091 8xsy:Lb (3.0) BS01 rna N/A GO:0002181 ... P47914 38942792
    591092 8xsy:Lc (3.0) BS01 rna N/A GO:0002181 ... P62888 38942792
    591093 8xsy:Lc (3.0) BS02 peptide N/A GO:0002181 ... P62888 38942792
    591094 8xsy:Ld (3.0) BS01 rna N/A GO:0002181 ... P62899 38942792
    591095 8xsy:Le (3.0) BS01 rna N/A GO:0002181 ... P62910 38942792
    591096 8xsy:Le (3.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    591097 8xsy:Lf (3.0) BS01 rna N/A GO:0000049 ... P18077 38942792
    591098 8xsy:Lg (3.0) BS01 rna N/A GO:0002181 ... P49207 38942792
    591099 8xsy:Lg (3.0) BS02 peptide N/A GO:0002181 ... P49207 38942792
    591100 8xsy:Lg (3.0) BS03 MG N/A GO:0002181 ... P49207 38942792
    591101 8xsy:Lg (3.0) BS04 ZN N/A GO:0002181 ... P49207 38942792
    591102 8xsy:Lh (3.0) BS01 rna N/A GO:0000463 ... P42766 38942792
    591103 8xsy:Lh (3.0) BS02 rna N/A GO:0000463 ... P42766 38942792
    591104 8xsy:Li (3.0) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    591105 8xsy:Lj (3.0) BS01 rna N/A GO:0002181 ... P61927 38942792
    591106 8xsy:Lj (3.0) BS02 rna N/A GO:0002181 ... P61927 38942792
    591107 8xsy:Lj (3.0) BS03 ZN N/A GO:0002181 ... P61927 38942792
    591108 8xsy:Lk (3.0) BS01 rna N/A GO:0001501 ... P63173 38942792
    591109 8xsy:Ll (3.0) BS01 rna N/A GO:0002181 ... P62891 38942792
    591110 8xsy:Ll (3.0) BS02 rna N/A GO:0002181 ... P62891 38942792
    591111 8xsy:Lm (3.0) BS01 rna N/A GO:0002181 ... P62987 38942792
    591112 8xsy:Lm (3.0) BS02 ZN N/A GO:0002181 ... P62987 38942792
    591113 8xsy:Lo (3.0) BS01 rna N/A GO:0002181 ... P83881 38942792
    591114 8xsy:Lo (3.0) BS02 rna N/A GO:0002181 ... P83881 38942792
    591115 8xsy:Lo (3.0) BS03 ZN N/A GO:0002181 ... P83881 38942792
    591116 8xsy:Lp (3.0) BS01 rna N/A GO:0002181 ... P61513 38942792
    591117 8xsy:Lp (3.0) BS02 ZN N/A GO:0002181 ... P61513 38942792
    591118 8xsy:Lr (3.0) BS01 rna N/A GO:0002181 ... P46779 38942792
    591119 8xsy:Ls (3.0) BS01 rna N/A GO:0000027 ... P05388 38942792
    591120 8xsy:Lt (3.0) BS01 rna N/A GO:0002181 ... P30050 38942792
    591121 8xsy:SA (3.0) BS01 rna N/A GO:0000028 ... P08865 38942792
    591122 8xsy:SB (3.0) BS01 rna N/A GO:0002181 ... P61247 38942792
    591123 8xsy:SB (3.0) BS02 rna N/A GO:0002181 ... P61247 38942792
    591124 8xsy:SC (3.0) BS01 rna N/A GO:0002181 ... P15880 38942792
    591125 8xsy:SD (3.0) BS01 rna N/A GO:0000977 ... P23396 38942792
    591126 8xsy:SE (3.0) BS01 rna N/A GO:0002181 ... P62701 38942792
    591127 8xsy:SF (3.0) BS01 rna N/A GO:0000028 ... P46782 38942792
    591128 8xsy:SG (3.0) BS01 rna N/A GO:0000082 ... P62753 38942792
    591129 8xsy:SH (3.0) BS01 rna N/A GO:0001843 ... P62081 38942792
    591130 8xsy:SI (3.0) BS01 rna N/A GO:0000462 ... P62241 38942792
    591131 8xsy:SI (3.0) BS02 rna N/A GO:0000462 ... P62241 38942792
    591132 8xsy:SJ (3.0) BS01 rna N/A GO:0002181 ... P46781 38942792
    591133 8xsy:SK (3.0) BS01 rna N/A GO:0002181 ... P46783 38942792
    591134 8xsy:SL (3.0) BS01 rna N/A GO:0002181 ... P62280 38942792
    591135 8xsy:SM (3.0) BS01 rna N/A GO:0002181 ... P25398 38942792
    591136 8xsy:SM (3.0) BS02 ZN N/A GO:0002181 ... P25398 38942792
    591137 8xsy:SN (3.0) BS01 rna N/A GO:0002181 ... P62277 38942792
    591138 8xsy:SO (3.0) BS01 rna N/A GO:0000028 ... P62263 38942792
    591139 8xsy:SP (3.0) BS01 rna N/A GO:0000028 ... P62841 38942792
    591140 8xsy:SQ (3.0) BS01 rna N/A GO:0000462 ... P62249 38942792
    591141 8xsy:SR (3.0) BS01 rna N/A GO:0002181 ... P08708 38942792
    591142 8xsy:SS (3.0) BS01 rna N/A GO:0002181 ... P62269 38942792
    591143 8xsy:ST (3.0) BS01 rna N/A GO:0000028 ... P39019 38942792
    591144 8xsy:SU (3.0) BS01 rna N/A GO:0002181 ... P60866 38942792
    591145 8xsy:SW (3.0) BS01 rna N/A GO:0002181 ... P62244 38942792
    591146 8xsy:SX (3.0) BS01 rna N/A GO:0002181 ... P62266 38942792
    591147 8xsy:SY (3.0) BS01 rna N/A GO:0002181 ... P62847 38942792
    591148 8xsy:SZ (3.0) BS01 rna N/A GO:0002181 ... P62851 38942792
    591149 8xsy:Sa (3.0) BS01 rna N/A GO:0002181 ... P62854 38942792
    591150 8xsy:Sa (3.0) BS02 ZN N/A GO:0002181 ... P62854 38942792
    591151 8xsy:Sb (3.0) BS01 rna N/A GO:0000028 ... P42677 38942792
    591152 8xsy:Sc (3.0) BS01 rna N/A GO:0000028 ... P62857 38942792
    591153 8xsy:Sd (3.0) BS01 rna N/A GO:0002181 ... P62273 38942792
    591154 8xsy:Sf (3.0) BS01 rna N/A GO:0002181 ... P62979 38942792
    591155 8xsy:Sg (3.0) BS01 rna N/A GO:0001891 ... P63244 38942792
    591156 8xsz:CA (3.2) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    591157 8xsz:LA (3.2) BS01 rna N/A GO:0002181 ... P62917 38942792
    591158 8xsz:LA (3.2) BS02 rna N/A GO:0002181 ... P62917 38942792
    591159 8xsz:LA (3.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    591160 8xsz:LB (3.2) BS01 rna N/A GO:0002181 ... P39023 38942792
    591161 8xsz:LC (3.2) BS01 rna N/A GO:0002181 ... P36578 38942792
    591162 8xsz:LC (3.2) BS02 rna N/A GO:0002181 ... P36578 38942792
    591163 8xsz:LD (3.2) BS01 rna N/A GO:0000027 ... P46777 38942792
    591164 8xsz:LD (3.2) BS02 rna N/A GO:0000027 ... P46777 38942792
    591165 8xsz:LE (3.2) BS01 rna N/A GO:0000027 ... Q02878 38942792
    591166 8xsz:LF (3.2) BS01 rna N/A GO:0000463 ... P18124 38942792
    591167 8xsz:LF (3.2) BS02 rna N/A GO:0000463 ... P18124 38942792
    591168 8xsz:LG (3.2) BS01 rna N/A GO:0000470 ... P62424 38942792
    591169 8xsz:LG (3.2) BS02 rna N/A GO:0000470 ... P62424 38942792
    591170 8xsz:LH (3.2) BS01 rna N/A GO:0002181 ... P32969 38942792
    591171 8xsz:LI (3.2) BS01 rna N/A GO:0000027 ... P27635 38942792
    591172 8xsz:LI (3.2) BS02 rna N/A GO:0000027 ... P27635 38942792
    591173 8xsz:LI (3.2) BS03 rna N/A GO:0000027 ... P27635 38942792
    591174 8xsz:LJ (3.2) BS01 rna N/A GO:0000027 ... P62913 38942792
    591175 8xsz:LJ (3.2) BS02 rna N/A GO:0000027 ... P62913 38942792
    591176 8xsz:LL (3.2) BS01 rna N/A GO:0001824 ... P26373 38942792
    591177 8xsz:LL (3.2) BS02 rna N/A GO:0001824 ... P26373 38942792
    591178 8xsz:LM (3.2) BS01 rna N/A GO:0002181 ... P50914 38942792
    591179 8xsz:LN (3.2) BS01 rna N/A GO:0002181 ... P61313 38942792
    591180 8xsz:LN (3.2) BS02 rna N/A GO:0002181 ... P61313 38942792
    591181 8xsz:LO (3.2) BS01 rna N/A GO:0002181 ... P40429 38942792
    591182 8xsz:LP (3.2) BS01 rna N/A GO:0002181 ... P18621 38942792
    591183 8xsz:LP (3.2) BS02 rna N/A GO:0002181 ... P18621 38942792
    591184 8xsz:LQ (3.2) BS01 rna N/A GO:0002181 ... Q07020 38942792
    591185 8xsz:LR (3.2) BS01 rna N/A GO:0002181 ... P84098 38942792
    591186 8xsz:LS (3.2) BS01 rna N/A GO:0002181 ... Q02543 38942792
    591187 8xsz:LS (3.2) BS02 rna N/A GO:0002181 ... Q02543 38942792
    591188 8xsz:LT (3.2) BS01 rna N/A GO:0002181 ... P46778 38942792
    591189 8xsz:LT (3.2) BS02 rna N/A GO:0002181 ... P46778 38942792
    591190 8xsz:LU (3.2) BS01 rna N/A GO:0002181 ... P35268 38942792
    591191 8xsz:LV (3.2) BS01 rna N/A GO:0000122 ... P62829 38942792
    591192 8xsz:LV (3.2) BS02 rna N/A GO:0000122 ... P62829 38942792
    591193 8xsz:LW (3.2) BS01 rna N/A GO:0000027 ... P83731 38942792
    591194 8xsz:LW (3.2) BS02 rna N/A GO:0000027 ... P83731 38942792
    591195 8xsz:LX (3.2) BS01 rna N/A GO:0000027 ... P62750 38942792
    591196 8xsz:LX (3.2) BS02 rna N/A GO:0000027 ... P62750 38942792
    591197 8xsz:LY (3.2) BS01 rna N/A GO:0002181 ... P61254 38942792
    591198 8xsz:LY (3.2) BS02 rna N/A GO:0002181 ... P61254 38942792
    591199 8xsz:LZ (3.2) BS01 rna N/A GO:0002181 ... P61353 38942792
    591200 8xsz:La (3.2) BS01 rna N/A GO:0002181 ... P46776 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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