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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    589601 8wmw:B (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589602 8wmw:B (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589603 8wmw:B (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589604 8wmw:B (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589605 8wmw:B (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589606 8wmw:B (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589607 8wmw:B (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589608 8wmw:B (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589609 8wmw:B (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589610 8wmw:B (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589611 8wmw:B (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589612 8wmw:B (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589613 8wmw:B (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589614 8wmw:B (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589615 8wmw:B (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589616 8wmw:B (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589617 8wmw:B (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589618 8wmw:B (3.3) BS44 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589619 8wmw:B (3.3) BS45 PQN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589620 8wmw:B (3.3) BS46 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589621 8wmw:B (3.3) BS47 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589622 8wmw:B (3.3) BS48 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589623 8wmw:B (3.3) BS49 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589624 8wmw:B (3.3) BS50 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589625 8wmw:B (3.3) BS51 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    589626 8wmw:C (3.3) BS01 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    589627 8wmw:C (3.3) BS02 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    589628 8wmw:I (3.3) BS01 CLA ? GO:0009507 ... A6MVV1 38734819
    589629 8wmw:I (3.3) BS02 CLA ? GO:0009507 ... A6MVV1 38734819
    589630 8wmw:I (3.3) BS03 CLA ? GO:0009507 ... A6MVV1 38734819
    589631 8wmw:I (3.3) BS04 WVN ? GO:0009507 ... A6MVV1 38734819
    589632 8wmw:I (3.3) BS05 CLA ? GO:0009507 ... A6MVV1 38734819
    589633 8wmw:J (3.3) BS01 CLA ? GO:0009507 ... A6MVU6 38734819
    589634 8wmw:J (3.3) BS02 CLA ? GO:0009507 ... A6MVU6 38734819
    589635 8wmw:J (3.3) BS03 CLA ? GO:0009507 ... A6MVU6 38734819
    589636 8wmw:J (3.3) BS04 CLA ? GO:0009507 ... A6MVU6 38734819
    589637 8wmw:J (3.3) BS05 WVN ? GO:0009507 ... A6MVU6 38734819
    589638 8wmw:J (3.3) BS06 CLA ? GO:0009507 ... A6MVU6 38734819
    589639 8wmw:J (3.3) BS07 II0 ? GO:0009507 ... A6MVU6 38734819
    589640 8wmw:J (3.3) BS08 CLA ? GO:0009507 ... A6MVU6 38734819
    589641 8wmw:J (3.3) BS09 CLA ? GO:0009507 ... A6MVU6 38734819
    589642 8wmw:K (3.3) BS01 CLA ? GO:0009507 ... A6MVS9 38734819
    589643 8wmw:K (3.3) BS02 CLA ? GO:0009507 ... A6MVS9 38734819
    589644 8wmw:K (3.3) BS03 WVN ? GO:0009507 ... A6MVS9 38734819
    589645 8wmw:K (3.3) BS04 CLA ? GO:0009507 ... A6MVS9 38734819
    589646 8wmw:K (3.3) BS05 CLA ? GO:0009507 ... A6MVS9 38734819
    589647 8wmw:L (3.3) BS01 CLA ? GO:0009507 ... A6MVV8 38734819
    589648 8wmw:L (3.3) BS02 CLA ? GO:0009507 ... A6MVV8 38734819
    589649 8wmw:L (3.3) BS03 CLA ? GO:0009507 ... A6MVV8 38734819
    589650 8wmw:L (3.3) BS04 CLA ? GO:0009507 ... A6MVV8 38734819
    589651 8wmw:L (3.3) BS05 WVN ? GO:0009507 ... A6MVV8 38734819
    589652 8wmw:L (3.3) BS06 CLA ? GO:0009507 ... A6MVV8 38734819
    589653 8wmw:L (3.3) BS07 CLA ? GO:0009507 ... A6MVV8 38734819
    589654 8wmw:L (3.3) BS08 CLA ? GO:0009507 ... A6MVV8 38734819
    589655 8wmw:L (3.3) BS09 WVN ? GO:0009507 ... A6MVV8 38734819
    589656 8wmw:L (3.3) BS10 CLA ? GO:0009507 ... A6MVV8 38734819
    589657 8wmw:L (3.3) BS11 CLA ? GO:0009507 ... A6MVV8 38734819
    589658 8wmw:L (3.3) BS12 II0 ? GO:0009507 ... A6MVV8 38734819
    589659 8wmw:L (3.3) BS13 CLA ? GO:0009507 ... A6MVV8 38734819
    589660 8wmw:M (3.3) BS01 CLA ? GO:0009507 ... A6MVT4 38734819
    589661 8wmw:M (3.3) BS02 WVN ? GO:0009507 ... A6MVT4 38734819
    589662 8wnf:A (1.9) BS01 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    589663 8wng:A (1.92) BS01 ILE 6.1.1.5 GO:0000049 ... P56456 38246751
    589664 8wng:A (1.92) BS02 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    589665 8wni:A (1.95) BS01 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    589666 8wni:A (1.95) BS02 VAL 6.1.1.5 GO:0000049 ... P56456 38246751
    589667 8wnj:A (1.78) BS01 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    589668 8wnj:A (1.78) BS02 GV6 6.1.1.5 GO:0000049 ... P56456 38246751
    589669 8wnt:B (3.42) BS01 ALA ? GO:0003333 ... Q9NS82 38589439
    589670 8wny:B (3.5) BS01 DSN ? GO:0003333 ... Q9NS82 38589439
    589671 8wo2:A (2.34) BS01 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    589672 8wo2:A (2.34) BS02 WN9 6.1.1.5 GO:0000049 ... P56456 38246751
    589673 8wo3:A (2.2) BS01 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    589674 8wo3:A (2.2) BS02 MRC 6.1.1.5 GO:0000049 ... P56456 38246751
    589675 8wom:A (3.5) BS01 BLD ? GO:0005515 ... Q9LJX0 38513023
    589676 8woo:A (3.9) BS01 ANP ? GO:0005515 ... Q9LJX0 38513023
    589677 8woo:A (3.9) BS02 ANP ? GO:0005515 ... Q9LJX0 38513023
    589678 8woo:A (3.9) BS03 BLD ? GO:0005515 ... Q9LJX0 38513023
    589679 8wop:A (2.35) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589680 8wop:A (2.35) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589681 8wop:B (2.35) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589682 8wop:B (2.35) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589683 8woq:A (2.85) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    589684 8woq:A (2.85) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    589685 8woq:A (2.85) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    589686 8woq:A (2.85) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    589687 8woq:A (2.85) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    589688 8woq:A (2.85) BS06 SPL ? GO:0016020 ... Q9NXL6 38378654
    589689 8woq:B (2.85) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    589690 8woq:B (2.85) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    589691 8woq:B (2.85) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    589692 8woq:B (2.85) BS04 SPL ? GO:0016020 ... Q9NXL6 38378654
    589693 8woq:B (2.85) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    589694 8woq:B (2.85) BS06 CLR ? GO:0016020 ... Q9NXL6 38378654
    589695 8woq:B (2.85) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    589696 8woq:B (2.85) BS08 CLR ? GO:0016020 ... Q9NXL6 38378654
    589697 8wor:A (2.66) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    589698 8wor:A (2.66) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    589699 8wor:A (2.66) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    589700 8wor:A (2.66) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    589701 8wor:A (2.66) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    589702 8wor:A (2.66) BS06 SPL ? GO:0016020 ... Q9NXL6 38378654
    589703 8wor:A (2.66) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    589704 8wor:B (2.66) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    589705 8wor:B (2.66) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    589706 8wor:B (2.66) BS03 SPL ? GO:0016020 ... Q9NXL6 38378654
    589707 8wor:B (2.66) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    589708 8wor:B (2.66) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    589709 8wor:B (2.66) BS06 CLR ? GO:0016020 ... Q9NXL6 38378654
    589710 8wor:B (2.66) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    589711 8wos:A (3.37) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    589712 8wos:A (3.37) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    589713 8wos:A (3.37) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    589714 8wos:A (3.37) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    589715 8wos:B (3.37) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    589716 8wos:B (3.37) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    589717 8wos:B (3.37) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    589718 8wos:B (3.37) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    589719 8wot:A (3.18) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    589720 8wot:A (3.18) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    589721 8wot:A (3.18) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    589722 8wot:A (3.18) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    589723 8wot:B (3.18) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    589724 8wot:B (3.18) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    589725 8wot:B (3.18) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    589726 8wot:B (3.18) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    589727 8wov:A (2.25) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589728 8wov:A (2.25) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589729 8wov:B (2.25) BS01 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589730 8wov:B (2.25) BS02 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589731 8wow:A (2.6) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589732 8wow:A (2.6) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589733 8wow:B (2.6) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589734 8wow:B (2.6) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    589735 8wox:A (2.75) BS01 ZN 3.4.-.-
    3.4.17.23
    GO:0006508 ... G1TEF4 38112468
    589736 8woy:A (3.14) BS01 ZN 3.4.-.-
    3.4.17.23
    GO:0006508 ... G1TEF4 38112468
    589737 8woz:A (3.25) BS01 ZN 3.4.-.-
    3.4.17.23
    GO:0006508 ... G1TEF4 38112468
    589738 8wp0:A (3.4) BS01 ATP ? GO:0005515 ... Q9LJX0 38513023
    589739 8wp0:A (3.4) BS02 ATP ? GO:0005515 ... Q9LJX0 38513023
    589740 8wpe:E (2.7) BS01 dna ? GO:0019031 ... A0A7H0DN82 37995690
    589741 8wpf:E (3.0) BS01 dna ? GO:0019031 ... A0A7H0DN82 37995690
    589742 8wpg:A (2.7) BS01 TRP ? GO:0004930 ... P41180 37919470
    589743 8wpg:A (2.7) BS02 CA ? GO:0004930 ... P41180 37919470
    589744 8wpg:A (2.7) BS03 YP4 ? GO:0004930 ... P41180 37919470
    589745 8wpg:B (2.7) BS01 TRP ? GO:0004930 ... P41180 37919470
    589746 8wpg:B (2.7) BS02 CA ? GO:0004930 ... P41180 37919470
    589747 8wpg:B (2.7) BS03 YP4 ? GO:0004930 ... P41180 37919470
    589748 8wpk:E (2.7) BS01 dna ? GO:0019031 ... A0A7H0DN82 37995690
    589749 8wpp:E (3.1) BS01 dna ? GO:0019031 ... A0A7H0DN82 37995690
    589750 8wpp:E (3.1) BS02 dna ? GO:0019031 ... A0A7H0DN82 37995690
    589751 8wpu:A (3.1) BS01 TRP ? GO:0004930 ... P41180 37919470
    589752 8wpu:A (3.1) BS02 CA ? GO:0004930 ... P41180 37919470
    589753 8wpu:A (3.1) BS03 YP4 ? GO:0004930 ... P41180 37919470
    589754 8wpu:B (3.1) BS01 YP4 ? GO:0004930 ... P41180 37919470
    589755 8wpu:B (3.1) BS02 TRP ? GO:0004930 ... P41180 37919470
    589756 8wpu:B (3.1) BS03 CA ? GO:0004930 ... P41180 37919470
    589757 8wpu:B (3.1) BS04 CLR ? GO:0004930 ... P41180 37919470
    589758 8wq2:AS2P (4.1) BS01 rna ? GO:0003735 ... P39478 38599770
    589759 8wq2:AS2P (4.1) BS02 UNK ? GO:0003735 ... P39478 38599770
    589760 8wq2:AS2P (4.1) BS03 UNK ? GO:0003735 ... P39478 38599770
    589761 8wq2:AS2P (4.1) BS04 UNK ? GO:0003735 ... P39478 38599770
    589762 8wq2:AS3P (4.1) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    589763 8wq2:AS4E (4.1) BS01 rna ? GO:0003723 ... O05634 38599770
    589764 8wq2:AS4P (4.1) BS01 rna ? GO:0003723 ... P39467 38599770
    589765 8wq2:AS5P (4.1) BS01 rna ? GO:0003723 ... O05641 38599770
    589766 8wq2:AS5P (4.1) BS02 UNK ? GO:0003723 ... O05641 38599770
    589767 8wq2:AS5P (4.1) BS03 UNK ? GO:0003723 ... O05641 38599770
    589768 8wq2:AS6E (4.1) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    589769 8wq2:AS7P (4.1) BS01 rna ? GO:0000028 ... P17198 38599770
    589770 8wq2:AS8E (4.1) BS01 rna ? GO:0000462 ... Q4JAP5 38599770
    589771 8wq2:AS8P (4.1) BS01 rna ? GO:0003735 ... O05636 38599770
    589772 8wq2:AS9P (4.1) BS01 rna ? GO:0000462 ... P39468 38599770
    589773 8wq2:S10P (4.1) BS01 rna ? GO:0000049 ... P17199 38599770
    589774 8wq2:S11P (4.1) BS01 rna ? GO:0003735 ... P39469 38599770
    589775 8wq2:S12P (4.1) BS01 rna ? GO:0003735 ... P11524 38599770
    589776 8wq2:S12P (4.1) BS02 rna ? GO:0003735 ... P11524 38599770
    589777 8wq2:S13P (4.1) BS01 rna ? GO:0003676 ... P39470 38599770
    589778 8wq2:S14P (4.1) BS01 rna ? GO:0003723 ... O05635 38599770
    589779 8wq2:S15P (4.1) BS01 rna ? GO:0003735 ... Q4JAI3 38599770
    589780 8wq2:S17E (4.1) BS01 rna ? GO:0003735 ... Q4JAX5 38599770
    589781 8wq2:S17P (4.1) BS01 rna ? GO:0003735 ... Q4JB49 38599770
    589782 8wq2:S19E (4.1) BS01 rna ? GO:0000028 ... Q4J8U1 38599770
    589783 8wq2:S19P (4.1) BS01 rna ? GO:0003723 ... Q4JB44 38599770
    589784 8wq2:S24E (4.1) BS01 rna ? GO:0003735 ... Q4JAF9 38599770
    589785 8wq2:S27A (4.1) BS01 rna ? GO:0003735 ... Q4JAG0 38599770
    589786 8wq2:S27E (4.1) BS01 rna ? GO:0003735 ... Q4J9B1 38599770
    589787 8wq2:S28E (4.1) BS01 rna ? GO:0003735 ... Q4JAV1 38599770
    589788 8wq2:S3AE (4.1) BS01 rna ? GO:0003735 ... Q4JB17 38599770
    589789 8wq2:SL7A (4.1) BS01 rna ? GO:0001682 ... Q4J8P1 38599770
    589790 8wq4:AS2P (4.53) BS01 rna ? GO:0003735 ... P39478 38599770
    589791 8wq4:AS3P (4.53) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    589792 8wq4:AS4E (4.53) BS01 rna ? GO:0003723 ... O05634 38599770
    589793 8wq4:AS4P (4.53) BS01 rna ? GO:0003723 ... P39467 38599770
    589794 8wq4:AS5P (4.53) BS01 rna ? GO:0003723 ... O05641 38599770
    589795 8wq4:AS5P (4.53) BS02 UNK ? GO:0003723 ... O05641 38599770
    589796 8wq4:AS5P (4.53) BS03 UNK ? GO:0003723 ... O05641 38599770
    589797 8wq4:AS6E (4.53) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    589798 8wq4:AS7P (4.53) BS01 rna ? GO:0000028 ... P17198 38599770
    589799 8wq4:AS8E (4.53) BS01 rna ? GO:0000462 ... Q4JAP5 38599770
    589800 8wq4:AS8P (4.53) BS01 rna ? GO:0003735 ... O05636 38599770

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218