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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    588801 8wi7:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    588802 8wi7:g (3.5) BS01 rna ? GO:0003735 ... N/A 38245551
    588803 8wi7:g (3.5) BS02 rna ? GO:0003735 ... N/A 38245551
    588804 8wi7:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    588805 8wi7:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    588806 8wi7:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    588807 8wi7:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    588808 8wi7:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    588809 8wi7:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    588810 8wi7:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    588811 8wi7:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    588812 8wi7:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    588813 8wi7:p (3.5) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    588814 8wi7:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    588815 8wi7:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    588816 8wi7:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    588817 8wi7:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    588818 8wi7:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    588819 8wi7:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    588820 8wi8:1 (2.7) BS01 rna ? GO:0003735 ... A0QV03 38245551
    588821 8wi8:2 (2.7) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    588822 8wi8:3 (2.7) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    588823 8wi8:3 (2.7) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    588824 8wi8:5 (2.7) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    588825 8wi8:6 (2.7) BS01 rna ? GO:0003735 ... A0QS39 38245551
    588826 8wi8:7 (2.7) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    588827 8wi8:8 (2.7) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    588828 8wi8:E (2.7) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    588829 8wi8:F (2.7) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    588830 8wi8:G (2.7) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    588831 8wi8:H (2.7) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    588832 8wi8:H (2.7) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    588833 8wi8:I (2.7) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    588834 8wi8:J (2.7) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    588835 8wi8:M (2.7) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    588836 8wi8:N (2.7) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    588837 8wi8:O (2.7) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    588838 8wi8:Q (2.7) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    588839 8wi8:R (2.7) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    588840 8wi8:R (2.7) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    588841 8wi8:S (2.7) BS01 rna ? GO:0003735 ... A0QV42 38245551
    588842 8wi8:T (2.7) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    588843 8wi8:U (2.7) BS01 rna ? GO:0003723 ... A0R151 38245551
    588844 8wi8:V (2.7) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    588845 8wi8:W (2.7) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    588846 8wi8:X (2.7) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    588847 8wi8:Z (2.7) BS01 rna ? GO:0003735 ... A0R150 38245551
    588848 8wi9:c (3.5) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    588849 8wi9:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    588850 8wi9:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    588851 8wi9:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    588852 8wi9:g (3.5) BS01 rna ? GO:0003735 ... N/A 38245551
    588853 8wi9:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    588854 8wi9:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    588855 8wi9:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    588856 8wi9:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    588857 8wi9:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    588858 8wi9:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    588859 8wi9:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    588860 8wi9:o (3.5) BS01 rna ? GO:0003735 ... A0QSG2 38245551
    588861 8wi9:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    588862 8wi9:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    588863 8wi9:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    588864 8wi9:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    588865 8wi9:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    588866 8wi9:t (3.5) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    588867 8wi9:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    588868 8wi9:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    588869 8wib:1 (3.5) BS01 rna ? GO:0003735 ... A0QV03 38245551
    588870 8wib:2 (3.5) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    588871 8wib:3 (3.5) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    588872 8wib:4 (3.5) BS01 rna ? GO:0003735 ... A0R215 38245551
    588873 8wib:5 (3.5) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    588874 8wib:6 (3.5) BS01 rna ? GO:0003735 ... A0QS39 38245551
    588875 8wib:7 (3.5) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    588876 8wib:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    588877 8wib:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    588878 8wib:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    588879 8wib:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    588880 8wib:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    588881 8wib:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    588882 8wib:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    588883 8wib:J (3.5) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    588884 8wib:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    588885 8wib:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    588886 8wib:N (3.5) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    588887 8wib:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    588888 8wib:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    588889 8wib:R (3.5) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    588890 8wib:R (3.5) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    588891 8wib:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    588892 8wib:S (3.5) BS02 rna ? GO:0003735 ... A0QV42 38245551
    588893 8wib:T (3.5) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    588894 8wib:U (3.5) BS01 rna ? GO:0003723 ... A0R151 38245551
    588895 8wib:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    588896 8wib:W (3.5) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    588897 8wib:X (3.5) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    588898 8wib:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    588899 8wib:Z (3.5) BS02 rna ? GO:0003735 ... A0R150 38245551
    588900 8wib:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    588901 8wib:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    588902 8wib:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    588903 8wib:g (3.5) BS01 rna ? GO:0003735 ... N/A 38245551
    588904 8wib:g (3.5) BS02 rna ? GO:0003735 ... N/A 38245551
    588905 8wib:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    588906 8wib:h (3.5) BS02 rna ? GO:0000028 ... A0QS97 38245551
    588907 8wib:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    588908 8wib:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    588909 8wib:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    588910 8wib:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    588911 8wib:l (3.5) BS02 rna ? GO:0003735 ... A0QSL6 38245551
    588912 8wib:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    588913 8wib:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    588914 8wib:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    588915 8wib:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    588916 8wib:p (3.5) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    588917 8wib:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    588918 8wib:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    588919 8wib:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    588920 8wib:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    588921 8wib:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    588922 8wib:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    588923 8wic:1 (3.5) BS01 rna ? GO:0003735 ... A0QV03 38245551
    588924 8wic:2 (3.5) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    588925 8wic:3 (3.5) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    588926 8wic:3 (3.5) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    588927 8wic:5 (3.5) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    588928 8wic:6 (3.5) BS01 rna ? GO:0003735 ... A0QS39 38245551
    588929 8wic:7 (3.5) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    588930 8wic:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    588931 8wic:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    588932 8wic:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    588933 8wic:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    588934 8wic:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    588935 8wic:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    588936 8wic:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    588937 8wic:J (3.5) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    588938 8wic:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    588939 8wic:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    588940 8wic:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    588941 8wic:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    588942 8wic:R (3.5) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    588943 8wic:R (3.5) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    588944 8wic:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    588945 8wic:T (3.5) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    588946 8wic:U (3.5) BS01 rna ? GO:0003723 ... A0R151 38245551
    588947 8wic:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    588948 8wic:W (3.5) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    588949 8wic:X (3.5) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    588950 8wic:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    588951 8wic:Z (3.5) BS02 rna ? GO:0003735 ... A0R150 38245551
    588952 8wid:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    588953 8wid:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    588954 8wid:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    588955 8wid:g (3.5) BS01 rna ? GO:0003735 ... A0R7F9 38245551
    588956 8wid:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    588957 8wid:h (3.5) BS02 rna ? GO:0000028 ... A0QS97 38245551
    588958 8wid:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    588959 8wid:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    588960 8wid:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    588961 8wid:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    588962 8wid:l (3.5) BS02 rna ? GO:0003735 ... A0QSL6 38245551
    588963 8wid:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    588964 8wid:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    588965 8wid:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    588966 8wid:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    588967 8wid:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    588968 8wid:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    588969 8wid:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    588970 8wid:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    588971 8wid:t (3.5) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    588972 8wid:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    588973 8wid:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    588974 8wid:w (3.5) BS02 rna ? GO:0006417 ... A0QZ86 38245551
    588975 8wif:c (2.9) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    588976 8wif:d (2.9) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    588977 8wif:e (2.9) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    588978 8wif:f (2.9) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    588979 8wif:g (2.9) BS01 rna ? GO:0003735 ... A0R7F9 38245551
    588980 8wif:h (2.9) BS01 rna ? GO:0000028 ... A0QS97 38245551
    588981 8wif:i (2.9) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    588982 8wif:j (2.9) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    588983 8wif:k (2.9) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    588984 8wif:l (2.9) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    588985 8wif:m (2.9) BS01 rna ? GO:0000049 ... A0QS96 38245551
    588986 8wif:n (2.9) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    588987 8wif:o (2.9) BS01 rna ? GO:0003735 ... A0R550 38245551
    588988 8wif:p (2.9) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    588989 8wif:q (2.9) BS01 rna ? GO:0003735 ... A0QV37 38245551
    588990 8wif:r (2.9) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    588991 8wif:s (2.9) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    588992 8wif:t (2.9) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    588993 8wif:t (2.9) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    588994 8wif:u (2.9) BS01 rna ? GO:0003723 ... A0R102 38245551
    588995 8wif:w (2.9) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    588996 8wik:A (2.0) BS01 6FA 1.6.5.- GO:0003677 ... Q9BRQ8 38414669
    588997 8wik:A (2.0) BS02 NAD 1.6.5.- GO:0003677 ... Q9BRQ8 38414669
    588998 8wil:A (2.1) BS01 MG 3.6.4.13 GO:0001172 ... A0A7D0QVD8 38296832
    588999 8wkl:A (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    589000 8wkl:B (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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