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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    587401 8wao:p (6.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587402 8wao:q (6.4) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587403 8wao:s (6.4) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    587404 8wao:w (6.4) BS01 ZN ? GO:0000428 ... P60899 38127763
    587405 8wao:w (6.4) BS02 ZN ? GO:0000428 ... P60899 38127763
    587406 8wao:x (6.4) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    587407 8wao:z (6.4) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    587408 8wap:0 (5.85) BS01 ZN ? GO:0000082 ... P51948 38127763
    587409 8wap:2 (5.85) BS01 ZN ? GO:0000438 ... Q13888 38127763
    587410 8wap:2 (5.85) BS02 ZN ? GO:0000438 ... Q13888 38127763
    587411 8wap:2 (5.85) BS03 ZN ? GO:0000438 ... Q13888 38127763
    587412 8wap:3 (5.85) BS01 ZN ? GO:0000438 ... Q13889 38127763
    587413 8wap:3 (5.85) BS02 ZN ? GO:0000438 ... Q13889 38127763
    587414 8wap:6 (5.85) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    587415 8wap:6 (5.85) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    587416 8wap:7 (5.85) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    587417 8wap:P (5.85) BS01 dna ? GO:0000785 ... P20226 38127763
    587418 8wap:P (5.85) BS02 dna ? GO:0000785 ... P20226 38127763
    587419 8wap:Q (5.85) BS01 dna ? GO:0000979 ... P52655 38127763
    587420 8wap:R (5.85) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    587421 8wap:R (5.85) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    587422 8wap:R (5.85) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    587423 8wap:T (5.85) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    587424 8wap:U (5.85) BS01 ZN ? GO:0001113 ... P29083 38127763
    587425 8wap:o (5.85) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587426 8wap:o (5.85) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587427 8wap:o (5.85) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587428 8wap:o (5.85) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587429 8wap:o (5.85) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587430 8wap:o (5.85) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587431 8wap:o (5.85) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587432 8wap:p (5.85) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587433 8wap:p (5.85) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587434 8wap:p (5.85) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587435 8wap:p (5.85) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587436 8wap:q (5.85) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587437 8wap:s (5.85) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    587438 8wap:w (5.85) BS01 ZN ? GO:0000428 ... P60899 38127763
    587439 8wap:w (5.85) BS02 ZN ? GO:0000428 ... P60899 38127763
    587440 8wap:x (5.85) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    587441 8wap:z (5.85) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    587442 8waq:0 (6.29) BS01 ZN ? GO:0000082 ... P51948 38127763
    587443 8waq:2 (6.29) BS01 ZN ? GO:0000438 ... Q13888 38127763
    587444 8waq:2 (6.29) BS02 ZN ? GO:0000438 ... Q13888 38127763
    587445 8waq:2 (6.29) BS03 ZN ? GO:0000438 ... Q13888 38127763
    587446 8waq:3 (6.29) BS01 ZN ? GO:0000438 ... Q13889 38127763
    587447 8waq:3 (6.29) BS02 ZN ? GO:0000438 ... Q13889 38127763
    587448 8waq:6 (6.29) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    587449 8waq:6 (6.29) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    587450 8waq:7 (6.29) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    587451 8waq:P (6.29) BS01 dna ? GO:0000785 ... P20226 38127763
    587452 8waq:P (6.29) BS02 dna ? GO:0000785 ... P20226 38127763
    587453 8waq:Q (6.29) BS01 dna ? GO:0000979 ... P52655 38127763
    587454 8waq:R (6.29) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    587455 8waq:R (6.29) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    587456 8waq:R (6.29) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    587457 8waq:T (6.29) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    587458 8waq:U (6.29) BS01 ZN ? GO:0001113 ... P29083 38127763
    587459 8waq:o (6.29) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587460 8waq:o (6.29) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587461 8waq:o (6.29) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587462 8waq:o (6.29) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587463 8waq:o (6.29) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587464 8waq:o (6.29) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587465 8waq:o (6.29) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587466 8waq:p (6.29) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587467 8waq:p (6.29) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587468 8waq:p (6.29) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587469 8waq:p (6.29) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587470 8waq:q (6.29) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587471 8waq:s (6.29) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    587472 8waq:w (6.29) BS01 ZN ? GO:0000428 ... P60899 38127763
    587473 8waq:w (6.29) BS02 ZN ? GO:0000428 ... P60899 38127763
    587474 8waq:x (6.29) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    587475 8waq:z (6.29) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    587476 8war:0 (7.2) BS01 ZN ? GO:0000082 ... P51948 38127763
    587477 8war:2 (7.2) BS01 ZN ? GO:0000438 ... Q13888 38127763
    587478 8war:2 (7.2) BS02 ZN ? GO:0000438 ... Q13888 38127763
    587479 8war:2 (7.2) BS03 ZN ? GO:0000438 ... Q13888 38127763
    587480 8war:3 (7.2) BS01 ZN ? GO:0000438 ... Q13889 38127763
    587481 8war:3 (7.2) BS02 ZN ? GO:0000438 ... Q13889 38127763
    587482 8war:6 (7.2) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    587483 8war:6 (7.2) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    587484 8war:7 (7.2) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    587485 8war:P (7.2) BS01 dna ? GO:0000785 ... P20226 38127763
    587486 8war:P (7.2) BS02 dna ? GO:0000785 ... P20226 38127763
    587487 8war:Q (7.2) BS01 dna ? GO:0000979 ... P52655 38127763
    587488 8war:R (7.2) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    587489 8war:R (7.2) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    587490 8war:R (7.2) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    587491 8war:T (7.2) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    587492 8war:U (7.2) BS01 ZN ? GO:0001113 ... P29083 38127763
    587493 8war:o (7.2) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587494 8war:o (7.2) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587495 8war:o (7.2) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587496 8war:o (7.2) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587497 8war:o (7.2) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587498 8war:o (7.2) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587499 8war:o (7.2) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587500 8war:p (7.2) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587501 8war:p (7.2) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587502 8war:p (7.2) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587503 8war:p (7.2) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587504 8war:q (7.2) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587505 8war:s (7.2) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    587506 8war:w (7.2) BS01 ZN ? GO:0000428 ... P60899 38127763
    587507 8war:w (7.2) BS02 ZN ? GO:0000428 ... P60899 38127763
    587508 8war:x (7.2) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    587509 8war:z (7.2) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    587510 8was:0 (6.13) BS01 ZN ? GO:0000082 ... P51948 38127763
    587511 8was:2 (6.13) BS01 ZN ? GO:0000438 ... Q13888 38127763
    587512 8was:2 (6.13) BS02 ZN ? GO:0000438 ... Q13888 38127763
    587513 8was:2 (6.13) BS03 ZN ? GO:0000438 ... Q13888 38127763
    587514 8was:3 (6.13) BS01 ZN ? GO:0000438 ... Q13889 38127763
    587515 8was:3 (6.13) BS02 ZN ? GO:0000438 ... Q13889 38127763
    587516 8was:6 (6.13) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    587517 8was:6 (6.13) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    587518 8was:7 (6.13) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    587519 8was:P (6.13) BS01 dna ? GO:0000785 ... P20226 38127763
    587520 8was:P (6.13) BS02 dna ? GO:0000785 ... P20226 38127763
    587521 8was:Q (6.13) BS01 dna ? GO:0000979 ... P52655 38127763
    587522 8was:R (6.13) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    587523 8was:R (6.13) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    587524 8was:R (6.13) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    587525 8was:T (6.13) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    587526 8was:U (6.13) BS01 ZN ? GO:0001113 ... P29083 38127763
    587527 8was:o (6.13) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587528 8was:o (6.13) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587529 8was:o (6.13) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587530 8was:o (6.13) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587531 8was:o (6.13) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587532 8was:o (6.13) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587533 8was:o (6.13) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587534 8was:p (6.13) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587535 8was:p (6.13) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587536 8was:p (6.13) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587537 8was:p (6.13) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    587538 8was:q (6.13) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587539 8was:s (6.13) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    587540 8was:w (6.13) BS01 ZN ? GO:0000428 ... P60899 38127763
    587541 8was:w (6.13) BS02 ZN ? GO:0000428 ... P60899 38127763
    587542 8was:x (6.13) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    587543 8was:z (6.13) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    587544 8wat:o (2.82) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587545 8wat:o (2.82) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587546 8wat:o (2.82) BS03 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587547 8wat:o (2.82) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587548 8wat:o (2.82) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587549 8wat:o (2.82) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587550 8wat:o (2.82) BS07 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587551 8wat:p (2.82) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587552 8wat:p (2.82) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587553 8wat:p (2.82) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587554 8wat:p (2.82) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587555 8wat:q (2.82) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587556 8wat:s (2.82) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    587557 8wat:w (2.82) BS01 ZN ? GO:0000428 ... P60899 38127763
    587558 8wat:w (2.82) BS02 ZN ? GO:0000428 ... P60899 38127763
    587559 8wat:x (2.82) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    587560 8wau:o (2.78) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587561 8wau:o (2.78) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587562 8wau:o (2.78) BS03 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587563 8wau:o (2.78) BS04 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587564 8wau:o (2.78) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587565 8wau:o (2.78) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587566 8wau:o (2.78) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587567 8wau:p (2.78) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587568 8wau:p (2.78) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587569 8wau:p (2.78) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587570 8wau:p (2.78) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587571 8wau:q (2.78) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587572 8wau:s (2.78) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    587573 8wau:w (2.78) BS01 ZN ? GO:0000428 ... P60899 38127763
    587574 8wau:w (2.78) BS02 ZN ? GO:0000428 ... P60899 38127763
    587575 8wau:x (2.78) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    587576 8wav:o (2.72) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587577 8wav:o (2.72) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587578 8wav:o (2.72) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587579 8wav:o (2.72) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587580 8wav:o (2.72) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587581 8wav:o (2.72) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587582 8wav:o (2.72) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587583 8wav:o (2.72) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587584 8wav:p (2.72) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587585 8wav:p (2.72) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587586 8wav:p (2.72) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587587 8wav:p (2.72) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587588 8wav:q (2.72) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587589 8wav:s (2.72) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    587590 8wav:w (2.72) BS01 ZN ? GO:0000428 ... P60899 38127763
    587591 8wav:w (2.72) BS02 ZN ? GO:0000428 ... P60899 38127763
    587592 8wav:x (2.72) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    587593 8waw:o (3.02) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587594 8waw:o (3.02) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587595 8waw:o (3.02) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587596 8waw:o (3.02) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587597 8waw:o (3.02) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587598 8waw:o (3.02) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587599 8waw:o (3.02) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587600 8waw:o (3.02) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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