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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    587001 8w6v:A (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    587002 8w6v:B (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    587003 8w6x:L (1.04) BS01 NFU 1.12.2.1 GO:0016491 ... P21852 37712026
    587004 8w6x:L (1.04) BS02 MG 1.12.2.1 GO:0016491 ... P21852 37712026
    587005 8w6x:L (1.04) BS03 SF4 1.12.2.1 GO:0016491 ... P21852 37712026
    587006 8w6x:S (1.04) BS01 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    587007 8w6x:S (1.04) BS02 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    587008 8w6x:S (1.04) BS03 F3S 1.12.2.1 GO:0009055 ... P21853 37712026
    587009 8w71:A (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    587010 8w71:A (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    587011 8w71:B (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    587012 8w71:B (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    587013 8w75:A (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587014 8w75:B (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587015 8w75:C (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587016 8w75:D (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587017 8w78:A (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587018 8w78:A (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587019 8w78:B (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587020 8w78:B (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587021 8w78:C (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587022 8w78:C (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587023 8w78:D (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587024 8w78:D (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587025 8w7d:A (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    587026 8w7d:B (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    587027 8w7d:C (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    587028 8w7d:D (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    587029 8w7f:A (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587030 8w7f:B (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587031 8w7f:C (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587032 8w7f:D (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    587033 8w7h:A (1.85) BS01 XUH 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 38141766
    587034 8w7m:2 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    587035 8w7m:2 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 37730685
    587036 8w7m:3 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P24279 37730685
    587037 8w7m:3 (4.12) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    587038 8w7m:3 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    587039 8w7m:4 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P30665 37730685
    587040 8w7m:4 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P30665 37730685
    587041 8w7m:4 (4.12) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 37730685
    587042 8w7m:5 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 37730685
    587043 8w7m:5 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P29496 37730685
    587044 8w7m:6 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    587045 8w7m:6 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P53091 37730685
    587046 8w7m:7 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P38132 37730685
    587047 8w7m:7 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    587048 8w7m:7 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    587049 8w7m:7 (4.12) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 37730685
    587050 8w87:R (2.8) BS01 B40 ? GO:0001594 ... Q96RJ0 37935377
    587051 8w88:R (2.6) BS01 CLR ? GO:0001594 ... Q96RJ0 37935377
    587052 8w88:R (2.6) BS02 CLR ? GO:0001594 ... Q96RJ0 37935377
    587053 8w88:R (2.6) BS03 UJL ? GO:0001594 ... Q96RJ0 37935377
    587054 8w89:R (3.0) BS01 PEA ? GO:0001594 ... Q96RJ0 37935377
    587055 8w8a:R (2.8) BS01 T5U ? GO:0001594 ... Q96RJ0 37935377
    587056 8w8b:R (3.0) BS01 CLR ? GO:0001586 ... P08908
    P0ABE7    		 37935377
    587057 8w8b:R (3.0) BS02 UJL ? GO:0001586 ... P08908
    P0ABE7    		 37935377
    587058 8w8e:A (3.9) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587059 8w8e:A (3.9) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587060 8w8e:A (3.9) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587061 8w8e:A (3.9) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587062 8w8e:A (3.9) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587063 8w8e:A (3.9) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587064 8w8e:B (3.9) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    587065 8w8e:B (3.9) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    587066 8w8e:B (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    587067 8w8e:C (3.9) BS01 ZN ? GO:0000428 ... I3LCH3 38816438
    587068 8w8e:E (3.9) BS01 dna ? GO:0001054 ... I3LSI7 38816438
    587069 8w8e:I (3.9) BS01 ZN ? GO:0000428 ... P60899 38816438
    587070 8w8e:I (3.9) BS02 ZN ? GO:0000428 ... P60899 38816438
    587071 8w8e:L (3.9) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38816438
    587072 8w8e:Z (3.9) BS01 dna ? GO:0000122 ... O00267 38816438
    587073 8w8e:a (3.9) BS01 GTP 2.7.7.50
    3.6.1.74    		 GO:0003824 ... O60942 38816438
    587074 8w8f:A (4.0) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587075 8w8f:A (4.0) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587076 8w8f:A (4.0) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587077 8w8f:A (4.0) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587078 8w8f:A (4.0) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587079 8w8f:A (4.0) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    587080 8w8f:B (4.0) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    587081 8w8f:B (4.0) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    587082 8w8f:B (4.0) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    587083 8w8f:C (4.0) BS01 ZN ? GO:0000428 ... I3LCH3 38816438
    587084 8w8f:E (4.0) BS01 dna ? GO:0001054 ... I3LSI7 38816438
    587085 8w8f:I (4.0) BS01 ZN ? GO:0000428 ... P60899 38816438
    587086 8w8f:I (4.0) BS02 ZN ? GO:0000428 ... P60899 38816438
    587087 8w8f:L (4.0) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38816438
    587088 8w8f:Z (4.0) BS01 dna ? GO:0000122 ... O00267 38816438
    587089 8w8n:B (2.693) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    587090 8w8n:C (2.693) BS01 dna N/A GO:0000428 ... Q8RQE9 38990947
    587091 8w8n:C (2.693) BS02 dna N/A GO:0000428 ... Q8RQE9 38990947
    587092 8w8n:C (2.693) BS03 rna N/A GO:0000428 ... Q8RQE9 38990947
    587093 8w8n:D (2.693) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    587094 8w8n:D (2.693) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    587095 8w8n:D (2.693) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    587096 8w8n:D (2.693) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    587097 8w8n:D (2.693) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    587098 8w8n:D (2.693) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    587099 8w8n:D (2.693) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    587100 8w8n:F (2.693) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    587101 8w8n:F (2.693) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    587102 8w8n:F (2.693) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    587103 8w8o:B (2.512) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    587104 8w8o:C (2.512) BS01 dna N/A GO:0000428 ... Q8RQE9 38990947
    587105 8w8o:C (2.512) BS02 dna N/A GO:0000428 ... Q8RQE9 38990947
    587106 8w8o:C (2.512) BS03 rna N/A GO:0000428 ... Q8RQE9 38990947
    587107 8w8o:D (2.512) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    587108 8w8o:D (2.512) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    587109 8w8o:D (2.512) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    587110 8w8o:D (2.512) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    587111 8w8o:D (2.512) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    587112 8w8o:D (2.512) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    587113 8w8o:D (2.512) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    587114 8w8o:F (2.512) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    587115 8w8o:F (2.512) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    587116 8w8o:F (2.512) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    587117 8w8p:B (3.165) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    587118 8w8p:C (3.165) BS01 dna N/A GO:0000428 ... Q8RQE9 38990947
    587119 8w8p:C (3.165) BS02 dna N/A GO:0000428 ... Q8RQE9 38990947
    587120 8w8p:C (3.165) BS03 rna N/A GO:0000428 ... Q8RQE9 38990947
    587121 8w8p:D (3.165) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    587122 8w8p:D (3.165) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    587123 8w8p:D (3.165) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    587124 8w8p:D (3.165) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    587125 8w8p:D (3.165) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    587126 8w8p:D (3.165) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    587127 8w8p:D (3.165) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    587128 8w8p:D (3.165) BS08 2TM N/A GO:0000287 ... Q8RQE8 38990947
    587129 8w8p:F (3.165) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    587130 8w8p:F (3.165) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    587131 8w8p:F (3.165) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    587132 8w9a:A (2.7) BS01 UEX 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38582077
    587133 8w9b:A (3.0) BS01 UJ3 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38582077
    587134 8w9c:B (3.3) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    587135 8w9c:E (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    587136 8w9c:E (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    587137 8w9c:E (3.3) BS03 ZN ? GO:0000118 ... Q04779 38598631
    587138 8w9c:F (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    587139 8w9c:F (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    587140 8w9d:B (3.9) BS01 peptide 3.5.1.98 GO:0000082 ... P32561 38598631
    587141 8w9d:B (3.9) BS02 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    587142 8w9d:E (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    587143 8w9d:E (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    587144 8w9d:E (3.9) BS03 ZN ? GO:0000118 ... Q04779 38598631
    587145 8w9d:F (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    587146 8w9d:F (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    587147 8w9d:a (3.9) BS01 dna ? GO:0000786 ... P68431 38598631
    587148 8w9d:a (3.9) BS02 dna ? GO:0000786 ... P68431 38598631
    587149 8w9d:b (3.9) BS01 dna ? GO:0000781 ... P62805 38598631
    587150 8w9d:b (3.9) BS02 dna ? GO:0000781 ... P62805 38598631
    587151 8w9d:c (3.9) BS01 dna ? GO:0000786 ... P04908 38598631
    587152 8w9d:c (3.9) BS02 dna ? GO:0000786 ... P04908 38598631
    587153 8w9d:d (3.9) BS01 dna ? GO:0000786 ... O60814 38598631
    587154 8w9d:d (3.9) BS02 dna ? GO:0000786 ... O60814 38598631
    587155 8w9d:e (3.9) BS01 dna ? GO:0000786 ... P68431 38598631
    587156 8w9d:e (3.9) BS02 dna ? GO:0000786 ... P68431 38598631
    587157 8w9d:f (3.9) BS01 dna ? GO:0000781 ... P62805 38598631
    587158 8w9d:f (3.9) BS02 dna ? GO:0000781 ... P62805 38598631
    587159 8w9d:g (3.9) BS01 dna ? GO:0000786 ... P04908 38598631
    587160 8w9d:g (3.9) BS02 dna ? GO:0000786 ... P04908 38598631
    587161 8w9d:h (3.9) BS01 dna ? GO:0000786 ... O60814 38598631
    587162 8w9d:h (3.9) BS02 dna ? GO:0000786 ... O60814 38598631
    587163 8w9e:B (3.6) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    587164 8w9e:E (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    587165 8w9e:E (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    587166 8w9e:E (3.6) BS03 ZN ? GO:0000118 ... Q04779 38598631
    587167 8w9e:E (3.6) BS04 ZN ? GO:0000118 ... Q04779 38598631
    587168 8w9e:F (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    587169 8w9e:F (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    587170 8w9e:a (3.6) BS01 dna ? GO:0000786 ... P68431 38598631
    587171 8w9e:a (3.6) BS02 dna ? GO:0000786 ... P68431 38598631
    587172 8w9e:b (3.6) BS01 dna ? GO:0000781 ... P62805 38598631
    587173 8w9e:b (3.6) BS02 dna ? GO:0000781 ... P62805 38598631
    587174 8w9e:c (3.6) BS01 dna ? GO:0000786 ... P04908 38598631
    587175 8w9e:c (3.6) BS02 dna ? GO:0000786 ... P04908 38598631
    587176 8w9e:d (3.6) BS01 dna ? GO:0000786 ... O60814 38598631
    587177 8w9e:d (3.6) BS02 dna ? GO:0000786 ... O60814 38598631
    587178 8w9e:e (3.6) BS01 dna ? GO:0000786 ... P68431 38598631
    587179 8w9e:e (3.6) BS02 dna ? GO:0000786 ... P68431 38598631
    587180 8w9e:f (3.6) BS01 dna ? GO:0000781 ... P62805 38598631
    587181 8w9e:f (3.6) BS02 dna ? GO:0000781 ... P62805 38598631
    587182 8w9e:g (3.6) BS01 dna ? GO:0000786 ... P04908 38598631
    587183 8w9e:g (3.6) BS02 dna ? GO:0000786 ... P04908 38598631
    587184 8w9e:h (3.6) BS01 dna ? GO:0000786 ... O60814 38598631
    587185 8w9f:B (4.4) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    587186 8w9f:E (4.4) BS01 ZN ? GO:0000118 ... Q04779 38598631
    587187 8w9f:E (4.4) BS02 ZN ? GO:0000118 ... Q04779 38598631
    587188 8w9f:E (4.4) BS03 ZN ? GO:0000118 ... Q04779 38598631
    587189 8w9f:F (4.4) BS01 ZN ? GO:0000118 ... Q04779 38598631
    587190 8w9f:F (4.4) BS02 ZN ? GO:0000118 ... Q04779 38598631
    587191 8w9f:G (4.4) BS01 dna ? GO:0000122 ... Q12432 38598631
    587192 8w9f:a (4.4) BS01 dna ? GO:0000786 ... P68431 38598631
    587193 8w9f:a (4.4) BS02 dna ? GO:0000786 ... P68431 38598631
    587194 8w9f:b (4.4) BS01 dna ? GO:0000781 ... P62805 38598631
    587195 8w9f:b (4.4) BS02 dna ? GO:0000781 ... P62805 38598631
    587196 8w9f:c (4.4) BS01 dna ? GO:0000786 ... P04908 38598631
    587197 8w9f:c (4.4) BS02 dna ? GO:0000786 ... P04908 38598631
    587198 8w9f:d (4.4) BS01 dna ? GO:0000786 ... O60814 38598631
    587199 8w9f:d (4.4) BS02 dna ? GO:0000786 ... O60814 38598631
    587200 8w9f:e (4.4) BS01 dna ? GO:0000786 ... P68431 38598631
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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