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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    586801 8w1f:E (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586802 8w1f:E (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586803 8w1f:F (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    586804 8w1f:F (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586805 8w1f:F (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586806 8w1f:G (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    586807 8w1f:G (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586808 8w1f:G (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586809 8w1f:H (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    586810 8w1f:H (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586811 8w1f:H (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586812 8w1f:I (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    586813 8w1f:I (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586814 8w1f:I (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586815 8w1f:J (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    586816 8w1f:J (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586817 8w1f:J (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586818 8w1f:K (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    586819 8w1f:K (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586820 8w1f:K (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586821 8w1f:L (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    586822 8w1f:L (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586823 8w1f:L (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    586824 8w1v:A (3.0) BS01 A1AE2 N/A GO:0003796 ... P00720
    P07550    		 38952152
    586825 8w1v:A (3.0) BS02 AV0 N/A GO:0003796 ... P00720
    P07550    		 38952152
    586826 8w1v:B (3.0) BS01 A1AE2 N/A GO:0003796 ... P00720
    P07550    		 38952152
    586827 8w1v:B (3.0) BS02 AV0 N/A GO:0003796 ... P00720
    P07550    		 38952152
    586828 8w21:A (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    586829 8w21:B (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    586830 8w21:C (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    586831 8w21:E (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    586832 8w21:G (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    586833 8w21:H (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    586834 8w2f:M (3.1) BS01 A1AE6 N/A GO:0000502 ... A0A5K1K7U1 39084225
    586835 8w2f:a (3.1) BS01 A1AE6 N/A GO:0000502 ... A0A5K1K7U1 39084225
    586836 8w2l:A (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586837 8w2l:A (2.45) BS02 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586838 8w2l:A (2.45) BS03 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586839 8w2l:B (2.45) BS01 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586840 8w2l:B (2.45) BS02 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586841 8w2l:B (2.45) BS03 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586842 8w2l:C (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586843 8w2l:C (2.45) BS02 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586844 8w2l:C (2.45) BS03 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586845 8w2l:C (2.45) BS04 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586846 8w2l:D (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586847 8w2l:D (2.45) BS02 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586848 8w2l:D (2.45) BS03 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586849 8w2l:D (2.45) BS04 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    586850 8w2o:A (3.49) BS01 rna ? GO:0000243 ... Q00916 38688558
    586851 8w2o:B (3.49) BS01 rna ? GO:0000243 ... Q05900 38688558
    586852 8w2o:B (3.49) BS02 rna ? GO:0000243 ... Q05900 38688558
    586853 8w2o:C (3.49) BS01 rna ? GO:0000243 ... P32605 38688558
    586854 8w2o:D (3.49) BS01 rna ? GO:0000243 ... Q03776 38688558
    586855 8w2o:G (3.49) BS01 rna ? GO:0000243 ... Q03782 38688558
    586856 8w2o:K (3.49) BS01 rna ? GO:0000243 ... P40018 38688558
    586857 8w2o:L (3.49) BS01 rna ? GO:0000243 ... Q02260 38688558
    586858 8w2o:M (3.49) BS01 peptide ? GO:0000243 ... Q06217 38688558
    586859 8w2o:M (3.49) BS02 rna ? GO:0000243 ... Q06217 38688558
    586860 8w2o:N (3.49) BS01 rna ? GO:0000243 ... P43321 38688558
    586861 8w2o:O (3.49) BS01 peptide ? GO:0000243 ... Q12330 38688558
    586862 8w2o:O (3.49) BS02 rna ? GO:0000243 ... Q12330 38688558
    586863 8w2o:P (3.49) BS01 rna ? GO:0000243 ... P54999 38688558
    586864 8w2o:Q (3.49) BS01 peptide ? GO:0000243 ... P40204 38688558
    586865 8w2o:Q (3.49) BS02 rna ? GO:0000243 ... P40204 38688558
    586866 8w41:A (3.54) BS01 ADP ? GO:0000146 ... Q9UM54 38331992
    586867 8w41:B (3.54) BS01 CA ? GO:0000086 ... P0DP26 38331992
    586868 8w41:B (3.54) BS02 CA ? GO:0000086 ... P0DP26 38331992
    586869 8w41:B (3.54) BS03 CA ? GO:0000086 ... P0DP26 38331992
    586870 8w41:B (3.54) BS04 CA ? GO:0000086 ... P0DP26 38331992
    586871 8w4b:A (2.152) BS01 STR N/A GO:0005634 ... Q6DCU6 38965213
    586872 8w4c:A (2.676) BS01 STR N/A GO:0005634 ... Q6DCU6 38965213
    586873 8w4o:5 (3.23) BS01 ET4 ? GO:0009416 ... B5YLU3 38071196
    586874 8w4o:5 (3.23) BS02 A86 ? GO:0009416 ... B5YLU3 38071196
    586875 8w4o:5 (3.23) BS03 CLA ? GO:0009416 ... B5YLU3 38071196
    586876 8w4o:5 (3.23) BS04 CLA ? GO:0009416 ... B5YLU3 38071196
    586877 8w4o:5 (3.23) BS05 CLA ? GO:0009416 ... B5YLU3 38071196
    586878 8w4o:5 (3.23) BS06 CLA ? GO:0009416 ... B5YLU3 38071196
    586879 8w4o:5 (3.23) BS07 CLA ? GO:0009416 ... B5YLU3 38071196
    586880 8w4o:5 (3.23) BS08 CLA ? GO:0009416 ... B5YLU3 38071196
    586881 8w4o:5 (3.23) BS09 CLA ? GO:0009416 ... B5YLU3 38071196
    586882 8w4o:5 (3.23) BS10 CLA ? GO:0009416 ... B5YLU3 38071196
    586883 8w4o:5 (3.23) BS11 CLA ? GO:0009416 ... B5YLU3 38071196
    586884 8w4o:6 (3.23) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    586885 8w4o:6 (3.23) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    586886 8w4o:6 (3.23) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    586887 8w4o:6 (3.23) BS04 DD6 ? GO:0009416 ... B8BX93 38071196
    586888 8w4o:6 (3.23) BS05 DD6 ? GO:0009416 ... B8BX93 38071196
    586889 8w4o:6 (3.23) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    586890 8w4o:6 (3.23) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    586891 8w4o:6 (3.23) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    586892 8w4o:6 (3.23) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    586893 8w4o:6 (3.23) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    586894 8w4o:6 (3.23) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    586895 8w4o:6 (3.23) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    586896 8w4o:6 (3.23) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    586897 8w4o:6 (3.23) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    586898 8w4o:6 (3.23) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    586899 8w4o:6 (3.23) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    586900 8w4o:6 (3.23) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    586901 8w4o:7 (3.23) BS01 A86 N/A GO:0009765 ... N/A 38071196
    586902 8w4o:7 (3.23) BS02 A86 N/A GO:0009765 ... N/A 38071196
    586903 8w4o:7 (3.23) BS03 DD6 N/A GO:0009765 ... N/A 38071196
    586904 8w4o:7 (3.23) BS04 DD6 N/A GO:0009765 ... N/A 38071196
    586905 8w4o:7 (3.23) BS05 CLA N/A GO:0009765 ... N/A 38071196
    586906 8w4o:7 (3.23) BS06 CLA N/A GO:0009765 ... N/A 38071196
    586907 8w4o:7 (3.23) BS07 CLA N/A GO:0009765 ... N/A 38071196
    586908 8w4o:7 (3.23) BS08 CLA N/A GO:0009765 ... N/A 38071196
    586909 8w4o:7 (3.23) BS09 CLA N/A GO:0009765 ... N/A 38071196
    586910 8w4o:7 (3.23) BS10 CLA N/A GO:0009765 ... N/A 38071196
    586911 8w4o:7 (3.23) BS11 CLA N/A GO:0009765 ... N/A 38071196
    586912 8w4o:7 (3.23) BS12 CLA N/A GO:0009765 ... N/A 38071196
    586913 8w4o:7 (3.23) BS13 CLA N/A GO:0009765 ... N/A 38071196
    586914 8w4o:7 (3.23) BS14 CLA N/A GO:0009765 ... N/A 38071196
    586915 8w4o:7 (3.23) BS15 CLA N/A GO:0009765 ... N/A 38071196
    586916 8w4o:7 (3.23) BS16 CLA N/A GO:0009765 ... N/A 38071196
    586917 8w4o:7 (3.23) BS17 CLA N/A GO:0009765 ... N/A 38071196
    586918 8w4o:7 (3.23) BS18 CLA N/A GO:0009765 ... N/A 38071196
    586919 8w4p:3 (3.48) BS01 A86 ? GO:0009416 ... B8BVI1 38071196
    586920 8w4p:3 (3.48) BS02 DD6 ? GO:0009416 ... B8BVI1 38071196
    586921 8w4p:3 (3.48) BS03 CLA ? GO:0009416 ... B8BVI1 38071196
    586922 8w4p:3 (3.48) BS04 CLA ? GO:0009416 ... B8BVI1 38071196
    586923 8w4p:3 (3.48) BS05 CLA ? GO:0009416 ... B8BVI1 38071196
    586924 8w4p:3 (3.48) BS06 CLA ? GO:0009416 ... B8BVI1 38071196
    586925 8w4p:3 (3.48) BS07 CLA ? GO:0009416 ... B8BVI1 38071196
    586926 8w4p:3 (3.48) BS08 CLA ? GO:0009416 ... B8BVI1 38071196
    586927 8w4p:3 (3.48) BS09 CLA ? GO:0009416 ... B8BVI1 38071196
    586928 8w4p:3 (3.48) BS10 CLA ? GO:0009416 ... B8BVI1 38071196
    586929 8w4p:3 (3.48) BS11 CLA ? GO:0009416 ... B8BVI1 38071196
    586930 8w4p:p (3.48) BS01 CLA ? GO:0009416 ... B8BUU4 38071196
    586931 8w4p:p (3.48) BS02 CLA ? GO:0009416 ... B8BUU4 38071196
    586932 8w4p:p (3.48) BS03 CLA ? GO:0009416 ... B8BUU4 38071196
    586933 8w4p:p (3.48) BS04 CLA ? GO:0009416 ... B8BUU4 38071196
    586934 8w4p:p (3.48) BS05 CLA ? GO:0009416 ... B8BUU4 38071196
    586935 8w4p:p (3.48) BS06 CLA ? GO:0009416 ... B8BUU4 38071196
    586936 8w4p:p (3.48) BS07 CLA ? GO:0009416 ... B8BUU4 38071196
    586937 8w4p:p (3.48) BS08 CLA ? GO:0009416 ... B8BUU4 38071196
    586938 8w4p:p (3.48) BS09 A86 ? GO:0009416 ... B8BUU4 38071196
    586939 8w4p:p (3.48) BS10 DD6 ? GO:0009416 ... B8BUU4 38071196
    586940 8w4u:A (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    586941 8w4u:A (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    586942 8w4u:B (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    586943 8w4u:B (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    586944 8w4u:D (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    586945 8w4u:D (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    586946 8w4u:G (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    586947 8w4u:G (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    586948 8w5k:F (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    586949 8w5k:I (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    586950 8w6a:A (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    586951 8w6a:B (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    586952 8w6a:D (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    586953 8w6a:G (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    586954 8w6a:G (1.53) BS02 peptide N/A GO:0000045 ... O95166 38437556
    586955 8w6c:A (2.7) BS01 NA ? GO:0005515 ... Q13183 38552027
    586956 8w6c:A (2.7) BS02 NA ? GO:0005515 ... Q13183 38552027
    586957 8w6c:A (2.7) BS03 Y01 ? GO:0005515 ... Q13183 38552027
    586958 8w6c:B (2.7) BS01 Y01 ? GO:0005515 ... Q13183 38552027
    586959 8w6c:B (2.7) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    586960 8w6c:B (2.7) BS03 NA ? GO:0005515 ... Q13183 38552027
    586961 8w6c:B (2.7) BS04 NA ? GO:0005515 ... Q13183 38552027
    586962 8w6d:A (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    586963 8w6d:A (2.5) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    586964 8w6d:B (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    586965 8w6d:B (2.5) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    586966 8w6g:A (3.3) BS01 VIJ ? GO:0005515 ... Q13183 38552027
    586967 8w6g:A (3.3) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    586968 8w6g:B (3.3) BS01 VIJ ? GO:0005515 ... Q13183 38552027
    586969 8w6g:B (3.3) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    586970 8w6h:A (3.1) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    586971 8w6h:A (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    586972 8w6h:A (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    586973 8w6h:B (3.1) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    586974 8w6h:B (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    586975 8w6h:B (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    586976 8w6i:B (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    586977 8w6i:B (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    586978 8w6i:D (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    586979 8w6i:D (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    586980 8w6j:B (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    586981 8w6j:B (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    586982 8w6j:D (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    586983 8w6j:D (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    586984 8w6n:A (3.2) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    586985 8w6n:B (3.2) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    586986 8w6o:A (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    586987 8w6o:A (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    586988 8w6o:A (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    586989 8w6o:B (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    586990 8w6o:B (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    586991 8w6o:B (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    586992 8w6p:A (1.91) BS01 FUC 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    586993 8w6p:A (1.91) BS02 YA4 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    586994 8w6p:A (1.91) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    586995 8w6p:A (1.91) BS04 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    586996 8w6p:B (1.91) BS01 PO4 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    586997 8w6p:B (1.91) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    586998 8w6p:B (1.91) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    586999 8w6r:A (1.95) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    587000 8w6r:A (1.95) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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