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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    585801 8v8h:C (3.58) BS02 YNZ 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585802 8v8i:A (3.2) BS01 YOR 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585803 8v8i:A (3.2) BS02 YNZ 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585804 8v8i:C (3.2) BS01 YOR 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585805 8v8i:C (3.2) BS02 YNZ 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585806 8v8j:A (3.35) BS01 YO4 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585807 8v8j:A (3.35) BS02 YOR 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585808 8v8j:A (3.35) BS03 YNZ 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585809 8v8j:C (3.35) BS01 YO4 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585810 8v8j:C (3.35) BS02 YOR 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585811 8v8j:C (3.35) BS03 YNZ 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585812 8v8u:A (2.93) BS01 1LT 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585813 8v8u:A (2.93) BS02 YQB 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585814 8v8u:C (2.93) BS01 1LT 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585815 8v8u:C (2.93) BS02 YQB 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585816 8v8v:A (2.61) BS01 YQ2 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585817 8v8v:A (2.61) BS02 1LT 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585818 8v8v:C (2.61) BS01 YQ2 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585819 8v8v:C (2.61) BS02 1LT 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    585820 8v9i:A (1.981) BS01 A1AAN 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    585821 8v9i:A (1.981) BS02 MG 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    585822 8v9i:A (1.981) BS03 BGQ 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    585823 8v9i:B (1.981) BS01 A1AAN 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    585824 8v9i:B (1.981) BS02 MG 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    585825 8v9j:1 (3.1) BS01 rna ? GO:0003735 ... A0QSD9 38355796
    585826 8v9j:2 (3.1) BS01 rna ? GO:0003735 ... A0QSG7 38355796
    585827 8v9j:2 (3.1) BS02 rna ? GO:0003735 ... A0QSG7 38355796
    585828 8v9j:3 (3.1) BS01 rna ? GO:0003735 ... A0R215 38355796
    585829 8v9j:4 (3.1) BS01 rna ? GO:0003735 ... A0R3I9 38355796
    585830 8v9j:5 (3.1) BS01 rna ? GO:0003735 ... A0QS39 38355796
    585831 8v9j:5 (3.1) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    585832 8v9j:6 (3.1) BS01 rna ? GO:0003735 ... A0R7K0 38355796
    585833 8v9j:7 (3.1) BS01 rna ? GO:0003735 ... A0QYU7 38355796
    585834 8v9j:8 (3.1) BS01 rna ? GO:0003735 ... A0QSL4 38355796
    585835 8v9j:C (3.1) BS01 rna ? GO:0002181 ... A0QSD4 38355796
    585836 8v9j:D (3.1) BS01 rna ? GO:0003735 ... A0QSD1 38355796
    585837 8v9j:E (3.1) BS01 rna ? GO:0003735 ... A0QSD2 38355796
    585838 8v9j:F (3.1) BS01 rna ? GO:0000049 ... A0QSG1 38355796
    585839 8v9j:F (3.1) BS02 rna ? GO:0000049 ... A0QSG1 38355796
    585840 8v9j:G (3.1) BS01 rna ? GO:0002181 ... A0QSG4 38355796
    585841 8v9j:H (3.1) BS01 rna ? GO:0003735 ... A0R7F6 38355796
    585842 8v9j:I (3.1) BS01 rna ? GO:0003735 ... A0QS62 38355796
    585843 8v9j:J (3.1) BS01 rna ? GO:0003735 ... A0QS45 38355796
    585844 8v9j:K (3.1) BS01 rna ? GO:0000049 ... A0QS46 38355796
    585845 8v9j:L (3.1) BS01 rna ? GO:0003729 ... A0QSP8 38355796
    585846 8v9j:M (3.1) BS01 rna ? GO:0003735 ... A0QSF9 38355796
    585847 8v9j:M (3.1) BS02 rna ? GO:0003735 ... A0QSF9 38355796
    585848 8v9j:N (3.1) BS01 rna ? GO:0003735 ... A0QSG8 38355796
    585849 8v9j:O (3.1) BS01 rna ? GO:0000049 ... A0QSD8 38355796
    585850 8v9j:P (3.1) BS01 rna ? GO:0003735 ... A0QSL9 38355796
    585851 8v9j:Q (3.1) BS01 rna ? GO:0003735 ... I7FGD9 38355796
    585852 8v9j:Q (3.1) BS02 rna ? GO:0003735 ... I7FGD9 38355796
    585853 8v9j:R (3.1) BS01 rna ? GO:0003735 ... A0QV42 38355796
    585854 8v9j:R (3.1) BS02 rna ? GO:0003735 ... A0QV42 38355796
    585855 8v9j:S (3.1) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    585856 8v9j:T (3.1) BS01 rna ? GO:0003723 ... A0R151 38355796
    585857 8v9j:U (3.1) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    585858 8v9j:V (3.1) BS01 rna ? GO:0000027 ... A0QSD3 38355796
    585859 8v9j:W (3.1) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    585860 8v9j:X (3.1) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    585861 8v9j:X (3.1) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    585862 8v9j:Y (3.1) BS01 rna ? GO:0003735 ... A0R150 38355796
    585863 8v9j:Z (3.1) BS01 rna ? GO:0003735 ... I7FJ52 38355796
    585864 8v9j:c (3.1) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    585865 8v9j:d (3.1) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    585866 8v9j:e (3.1) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    585867 8v9j:f (3.1) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    585868 8v9j:g (3.1) BS01 rna ? GO:0000028 ... A0QS97 38355796
    585869 8v9j:h (3.1) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    585870 8v9j:i (3.1) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    585871 8v9j:j (3.1) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    585872 8v9j:k (3.1) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    585873 8v9j:l (3.1) BS01 rna ? GO:0000049 ... A0QS96 38355796
    585874 8v9j:m (3.1) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    585875 8v9j:n (3.1) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    585876 8v9j:o (3.1) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    585877 8v9j:o (3.1) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    585878 8v9j:p (3.1) BS01 rna ? GO:0003735 ... A0QV37 38355796
    585879 8v9j:q (3.1) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    585880 8v9j:r (3.1) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    585881 8v9j:s (3.1) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    585882 8v9j:t (3.1) BS01 rna ? GO:0003723 ... A0R102 38355796
    585883 8v9k:1 (3.1) BS01 rna ? GO:0003735 ... A0QSD9 38355796
    585884 8v9k:2 (3.1) BS01 rna ? GO:0003735 ... A0QSG7 38355796
    585885 8v9k:2 (3.1) BS02 rna ? GO:0003735 ... A0QSG7 38355796
    585886 8v9k:3 (3.1) BS01 rna ? GO:0003735 ... A0R215 38355796
    585887 8v9k:4 (3.1) BS01 rna ? GO:0003735 ... A0R3I9 38355796
    585888 8v9k:5 (3.1) BS01 rna ? GO:0003735 ... A0QS39 38355796
    585889 8v9k:5 (3.1) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    585890 8v9k:6 (3.1) BS01 rna ? GO:0003735 ... A0R7K0 38355796
    585891 8v9k:7 (3.1) BS01 rna ? GO:0003735 ... A0QYU7 38355796
    585892 8v9k:8 (3.1) BS01 rna ? GO:0003735 ... A0QSL4 38355796
    585893 8v9k:C (3.1) BS01 rna ? GO:0002181 ... A0QSD4 38355796
    585894 8v9k:D (3.1) BS01 rna ? GO:0003735 ... A0QSD1 38355796
    585895 8v9k:E (3.1) BS01 rna ? GO:0003735 ... A0QSD2 38355796
    585896 8v9k:F (3.1) BS01 rna ? GO:0000049 ... A0QSG1 38355796
    585897 8v9k:F (3.1) BS02 rna ? GO:0000049 ... A0QSG1 38355796
    585898 8v9k:G (3.1) BS01 rna ? GO:0002181 ... A0QSG4 38355796
    585899 8v9k:H (3.1) BS01 rna ? GO:0003735 ... A0R7F6 38355796
    585900 8v9k:I (3.1) BS01 rna ? GO:0003735 ... A0QS62 38355796
    585901 8v9k:J (3.1) BS01 rna ? GO:0003735 ... A0QS45 38355796
    585902 8v9k:K (3.1) BS01 rna ? GO:0000049 ... A0QS46 38355796
    585903 8v9k:L (3.1) BS01 rna ? GO:0003729 ... A0QSP8 38355796
    585904 8v9k:M (3.1) BS01 rna ? GO:0003735 ... A0QSF9 38355796
    585905 8v9k:M (3.1) BS02 rna ? GO:0003735 ... A0QSF9 38355796
    585906 8v9k:N (3.1) BS01 rna ? GO:0003735 ... A0QSG8 38355796
    585907 8v9k:O (3.1) BS01 rna ? GO:0000049 ... A0QSD8 38355796
    585908 8v9k:P (3.1) BS01 rna ? GO:0003735 ... A0QSL9 38355796
    585909 8v9k:Q (3.1) BS01 rna ? GO:0003735 ... I7FGD9 38355796
    585910 8v9k:Q (3.1) BS02 rna ? GO:0003735 ... I7FGD9 38355796
    585911 8v9k:R (3.1) BS01 rna ? GO:0003735 ... A0QV42 38355796
    585912 8v9k:R (3.1) BS02 rna ? GO:0003735 ... A0QV42 38355796
    585913 8v9k:S (3.1) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    585914 8v9k:T (3.1) BS01 rna ? GO:0003723 ... A0R151 38355796
    585915 8v9k:U (3.1) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    585916 8v9k:V (3.1) BS01 rna ? GO:0000027 ... A0QSD3 38355796
    585917 8v9k:W (3.1) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    585918 8v9k:X (3.1) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    585919 8v9k:X (3.1) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    585920 8v9k:Y (3.1) BS01 rna ? GO:0003735 ... A0R150 38355796
    585921 8v9k:Z (3.1) BS01 rna ? GO:0003735 ... I7FJ52 38355796
    585922 8v9k:Z (3.1) BS02 ZN ? GO:0003735 ... I7FJ52 38355796
    585923 8v9k:b (3.1) BS01 rna ? GO:0003735 ... A0QVB8 38355796
    585924 8v9k:c (3.1) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    585925 8v9k:d (3.1) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    585926 8v9k:e (3.1) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    585927 8v9k:f (3.1) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    585928 8v9k:f (3.1) BS02 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    585929 8v9k:g (3.1) BS01 rna ? GO:0000028 ... A0QS97 38355796
    585930 8v9k:h (3.1) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    585931 8v9k:i (3.1) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    585932 8v9k:j (3.1) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    585933 8v9k:k (3.1) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    585934 8v9k:l (3.1) BS01 rna ? GO:0000049 ... A0QS96 38355796
    585935 8v9k:m (3.1) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    585936 8v9k:n (3.1) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    585937 8v9k:o (3.1) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    585938 8v9k:o (3.1) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    585939 8v9k:p (3.1) BS01 rna ? GO:0003735 ... A0QV37 38355796
    585940 8v9k:q (3.1) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    585941 8v9k:r (3.1) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    585942 8v9k:s (3.1) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    585943 8v9k:t (3.1) BS01 rna ? GO:0003723 ... A0R102 38355796
    585944 8v9k:z (3.1) BS01 rna ? GO:0001666 ... P9WL63 38355796
    585945 8v9k:z (3.1) BS02 rna ? GO:0001666 ... P9WL63 38355796
    585946 8v9l:1 (3.0) BS01 rna ? GO:0003735 ... A0QSD9 38355796
    585947 8v9l:2 (3.0) BS01 rna ? GO:0003735 ... A0QSG7 38355796
    585948 8v9l:2 (3.0) BS02 rna ? GO:0003735 ... A0QSG7 38355796
    585949 8v9l:3 (3.0) BS01 rna ? GO:0003735 ... A0R215 38355796
    585950 8v9l:4 (3.0) BS01 rna ? GO:0003735 ... A0R3I9 38355796
    585951 8v9l:5 (3.0) BS01 rna ? GO:0003735 ... A0QS39 38355796
    585952 8v9l:5 (3.0) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    585953 8v9l:6 (3.0) BS01 rna ? GO:0003735 ... A0R7K0 38355796
    585954 8v9l:7 (3.0) BS01 rna ? GO:0003735 ... A0QYU7 38355796
    585955 8v9l:8 (3.0) BS01 rna ? GO:0003735 ... A0QSL4 38355796
    585956 8v9l:C (3.0) BS01 rna ? GO:0002181 ... A0QSD4 38355796
    585957 8v9l:D (3.0) BS01 rna ? GO:0003735 ... A0QSD1 38355796
    585958 8v9l:E (3.0) BS01 rna ? GO:0003735 ... A0QSD2 38355796
    585959 8v9l:F (3.0) BS01 rna ? GO:0000049 ... A0QSG1 38355796
    585960 8v9l:F (3.0) BS02 rna ? GO:0000049 ... A0QSG1 38355796
    585961 8v9l:G (3.0) BS01 rna ? GO:0002181 ... A0QSG4 38355796
    585962 8v9l:H (3.0) BS01 rna ? GO:0003735 ... A0R7F6 38355796
    585963 8v9l:I (3.0) BS01 rna ? GO:0003735 ... A0QS62 38355796
    585964 8v9l:J (3.0) BS01 rna ? GO:0003735 ... A0QS45 38355796
    585965 8v9l:L (3.0) BS01 rna ? GO:0003729 ... A0QSP8 38355796
    585966 8v9l:M (3.0) BS01 rna ? GO:0003735 ... A0QSF9 38355796
    585967 8v9l:M (3.0) BS02 rna ? GO:0003735 ... A0QSF9 38355796
    585968 8v9l:N (3.0) BS01 rna ? GO:0003735 ... A0QSG8 38355796
    585969 8v9l:O (3.0) BS01 rna ? GO:0000049 ... A0QSD8 38355796
    585970 8v9l:P (3.0) BS01 rna ? GO:0003735 ... A0QSL9 38355796
    585971 8v9l:Q (3.0) BS01 rna ? GO:0003735 ... I7FGD9 38355796
    585972 8v9l:Q (3.0) BS02 rna ? GO:0003735 ... I7FGD9 38355796
    585973 8v9l:R (3.0) BS01 rna ? GO:0003735 ... A0QV42 38355796
    585974 8v9l:R (3.0) BS02 rna ? GO:0003735 ... A0QV42 38355796
    585975 8v9l:S (3.0) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    585976 8v9l:T (3.0) BS01 rna ? GO:0003723 ... A0R151 38355796
    585977 8v9l:U (3.0) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    585978 8v9l:V (3.0) BS01 rna ? GO:0000027 ... A0QSD3 38355796
    585979 8v9l:W (3.0) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    585980 8v9l:X (3.0) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    585981 8v9l:X (3.0) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    585982 8v9l:Y (3.0) BS01 rna ? GO:0003735 ... A0R150 38355796
    585983 8v9l:Z (3.0) BS01 rna ? GO:0003735 ... I7FJ52 38355796
    585984 8v9l:b (3.0) BS01 rna ? GO:0003735 ... A0QVB8 38355796
    585985 8v9l:c (3.0) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    585986 8v9l:d (3.0) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    585987 8v9l:e (3.0) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    585988 8v9l:f (3.0) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    585989 8v9l:g (3.0) BS01 rna ? GO:0000028 ... A0QS97 38355796
    585990 8v9l:h (3.0) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    585991 8v9l:i (3.0) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    585992 8v9l:j (3.0) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    585993 8v9l:k (3.0) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    585994 8v9l:l (3.0) BS01 rna ? GO:0000049 ... A0QS96 38355796
    585995 8v9l:m (3.0) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    585996 8v9l:n (3.0) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    585997 8v9l:o (3.0) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    585998 8v9l:o (3.0) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    585999 8v9l:p (3.0) BS01 rna ? GO:0003735 ... A0QV37 38355796
    586000 8v9l:q (3.0) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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