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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    58401 2o01:L (3.4) BS02 CLA ? GO:0009522 ... Q41385 17476261
    58402 2o01:L (3.4) BS03 CLA ? GO:0009522 ... Q41385 17476261
    58403 2o01:L (3.4) BS04 CLA ? GO:0009522 ... Q41385 17476261
    58404 2o01:L (3.4) BS05 CLA ? GO:0009522 ... Q41385 17476261
    58405 2o01:L (3.4) BS06 CLA ? GO:0009522 ... Q41385 17476261
    58406 2o01:L (3.4) BS07 CLA ? GO:0009522 ... Q41385 17476261
    58407 2o02:A (1.5) BS01 peptide ? GO:0000122 ... P63104 17235285
    58408 2o02:B (1.5) BS01 peptide ? GO:0000122 ... P63104 17235285
    58409 2o03:A (2.699) BS01 ZN ? GO:0000976 ... P9WN85 17213192
    58410 2o03:A (2.699) BS02 ZN ? GO:0000976 ... P9WN85 17213192
    58411 2o03:A (2.699) BS03 ZN ? GO:0000976 ... P9WN85 17213192
    58412 2o04:A (1.7) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58413 2o04:A (1.7) BS02 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58414 2o04:A (1.7) BS03 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    58415 2o04:A (1.7) BS04 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    58416 2o05:A (2.0) BS01 MTA 2.5.1.16 GO:0003824 ... P19623 17585781
    58417 2o05:B (2.0) BS01 MTA 2.5.1.16 GO:0003824 ... P19623 17585781
    58418 2o06:A (2.0) BS01 MG 2.5.1.16 GO:0003824 ... P19623 17585781
    58419 2o06:A (2.0) BS02 MTA 2.5.1.16 GO:0003824 ... P19623 17585781
    58420 2o06:A (2.0) BS03 PUT 2.5.1.16 GO:0003824 ... P19623 17585781
    58421 2o06:B (2.0) BS01 MTA 2.5.1.16 GO:0003824 ... P19623 17585781
    58422 2o06:B (2.0) BS02 PUT 2.5.1.16 GO:0003824 ... P19623 17585781
    58423 2o07:A (1.89) BS01 SPD 2.5.1.16 GO:0003824 ... P19623 17585781
    58424 2o07:A (1.89) BS02 MTA 2.5.1.16 GO:0003824 ... P19623 17585781
    58425 2o07:B (1.89) BS01 SPD 2.5.1.16 GO:0003824 ... P19623 17585781
    58426 2o07:B (1.89) BS02 MTA 2.5.1.16 GO:0003824 ... P19623 17585781
    58427 2o0b:A (1.15) BS01 S3P 2.5.1.19 GO:0003824 ... P9WPY5 N/A
    58428 2o0d:A (1.6) BS01 S3P 2.5.1.19 GO:0003824 ... P9WPY5 N/A
    58429 2o0e:A (1.81) BS01 S3P 2.5.1.19 GO:0003824 ... P9WPY5 N/A
    58430 2o0e:A (1.81) BS02 PEP 2.5.1.19 GO:0003824 ... P9WPY5 N/A
    58431 2o0l:A (1.99) BS01 S4M 2.5.1.16 GO:0003824 ... P19623 17585781
    58432 2o0l:B (1.99) BS01 S4M 2.5.1.16 GO:0003824 ... P19623 17585781
    58433 2o0r:A (2.0) BS01 GOL 2.6.1.17 GO:0005515 ... P9WPZ5 17292400
    58434 2o0r:B (2.0) BS01 GOL 2.6.1.17 GO:0005515 ... P9WPZ5 17292400
    58435 2o0v:A (1.9) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58436 2o0v:A (1.9) BS02 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58437 2o0v:A (1.9) BS03 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58438 2o0v:A (1.9) BS04 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    58439 2o0v:A (1.9) BS05 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    58440 2o0w:A (1.9) BS01 CA 4.2.2.2 GO:0005576 ... P39116 N/A
    58441 2o0w:A (1.9) BS02 CA 4.2.2.2 GO:0005576 ... P39116 N/A
    58442 2o0x:A (1.96) BS01 SKP 2.5.1.19 GO:0003824 ... P9WPY5 N/A
    58443 2o0z:A (2.0) BS01 EPS 2.5.1.19 GO:0003824 ... P9WPY5 N/A
    58444 2o12:A (1.72) BS01 FMN 4.2.3.5 GO:0004107 ... P9WPY1 N/A
    58445 2o17:A (2.3) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58446 2o17:A (2.3) BS02 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58447 2o17:A (2.3) BS03 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58448 2o17:A (2.3) BS04 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    58449 2o17:A (2.3) BS05 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    58450 2o18:A (2.2) BS01 CA 2.7.1.180 GO:0005886 ... P0AB85 N/A
    58451 2o18:B (2.2) BS01 CA 2.7.1.180 GO:0005886 ... P0AB85 N/A
    58452 2o18:C (2.2) BS01 CA 2.7.1.180 GO:0005886 ... P0AB85 N/A
    58453 2o18:D (2.2) BS01 CA 2.7.1.180 GO:0005886 ... P0AB85 N/A
    58454 2o19:A (2.45) BS01 dna 5.6.2.1 GO:0000287 ... P14294 17331537
    58455 2o19:B (2.45) BS01 dna 5.6.2.1 GO:0000287 ... P14294 17331537
    58456 2o1d:A (2.0) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58457 2o1d:A (2.0) BS02 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58458 2o1d:A (2.0) BS03 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    58459 2o1d:A (2.0) BS04 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    58460 2o1e:A (2.6) BS01 MN ? GO:0005886 ... O34966 N/A
    58461 2o1e:B (2.6) BS01 MN ? GO:0005886 ... O34966 N/A
    58462 2o1h:A (1.67) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 17259183
    58463 2o1h:A (1.67) BS02 UDP 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 17259183
    58464 2o1l:A (1.97) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    58465 2o1l:A (1.97) BS02 CO3 3.4.21.- GO:0005576 ... P24627 N/A
    58466 2o1n:A (2.8) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    58467 2o1o:A (2.42) BS01 MG ? GO:0004161 ... Q5CR09 19101474
    58468 2o1o:A (2.42) BS02 MG ? GO:0004161 ... Q5CR09 19101474
    58469 2o1o:A (2.42) BS03 RIS ? GO:0004161 ... Q5CR09 19101474 MOAD: Ki=0.38nM
    BindingDB: IC50=45.7nM, Ki=0.38nM
    58470 2o1o:B (2.42) BS01 MG ? GO:0004161 ... Q5CR09 19101474
    58471 2o1o:B (2.42) BS02 MG ? GO:0004161 ... Q5CR09 19101474
    58472 2o1o:B (2.42) BS03 RIS ? GO:0004161 ... Q5CR09 19101474 MOAD: Ki=0.38nM
    BindingDB: IC50=45.7nM, Ki=0.38nM
    58473 2o1s:A (2.4) BS01 MG 2.2.1.7 GO:0000287 ... P77488 17135236
    58474 2o1s:A (2.4) BS02 TPP 2.2.1.7 GO:0000287 ... P77488 17135236
    58475 2o1s:B (2.4) BS01 MG 2.2.1.7 GO:0000287 ... P77488 17135236
    58476 2o1s:C (2.4) BS01 MG 2.2.1.7 GO:0000287 ... P77488 17135236
    58477 2o1s:C (2.4) BS02 TPP 2.2.1.7 GO:0000287 ... P77488 17135236
    58478 2o1s:D (2.4) BS01 MG 2.2.1.7 GO:0000287 ... P77488 17135236
    58479 2o1x:A (2.9) BS01 MG 2.2.1.7 GO:0000287 ... Q9RUB5 17135236
    58480 2o1x:A (2.9) BS02 TPP 2.2.1.7 GO:0000287 ... Q9RUB5 17135236
    58481 2o1x:B (2.9) BS01 MG 2.2.1.7 GO:0000287 ... Q9RUB5 17135236
    58482 2o1x:B (2.9) BS02 TPP 2.2.1.7 GO:0000287 ... Q9RUB5 17135236
    58483 2o1x:C (2.9) BS01 MG 2.2.1.7 GO:0000287 ... Q9RUB5 17135236
    58484 2o1x:C (2.9) BS02 TPP 2.2.1.7 GO:0000287 ... Q9RUB5 17135236
    58485 2o1x:D (2.9) BS01 MG 2.2.1.7 GO:0000287 ... Q9RUB5 17135236
    58486 2o1x:D (2.9) BS02 TPP 2.2.1.7 GO:0000287 ... Q9RUB5 17135236
    58487 2o23:A (1.2) BS01 NAD 1.1.1.159
    1.1.1.178
    1.1.1.239
    1.1.1.35
    1.1.1.53
    1.1.1.62    		 GO:0000049 ... Q99714 N/A
    58488 2o23:B (1.2) BS01 NAD 1.1.1.159
    1.1.1.178
    1.1.1.239
    1.1.1.35
    1.1.1.53
    1.1.1.62    		 GO:0000049 ... Q99714 N/A
    58489 2o24:A (1.45) BS01 CL ? GO:0003674 ... P42212 17434942
    58490 2o28:A (1.8) BS01 16G 2.3.1.4 GO:0000139 ... Q96EK6 N/A
    58491 2o28:A (1.8) BS02 COA 2.3.1.4 GO:0000139 ... Q96EK6 N/A
    58492 2o28:B (1.8) BS01 16G 2.3.1.4 GO:0000139 ... Q96EK6 N/A
    58493 2o28:B (1.8) BS02 COA 2.3.1.4 GO:0000139 ... Q96EK6 N/A
    58494 2o2c:A (1.58) BS01 G6Q 5.3.1.9 GO:0004347 ... P13377 18561188
    58495 2o2c:B (1.58) BS01 G6Q 5.3.1.9 GO:0004347 ... P13377 18561188
    58496 2o2c:C (1.58) BS01 G6Q 5.3.1.9 GO:0004347 ... P13377 18561188
    58497 2o2h:A (1.6) BS01 DCE 3.8.1.5 GO:0003824 ... P9WMR9 N/A
    58498 2o2i:A (1.5) BS01 PDO 3.8.1.5 GO:0003824 ... P9WMR9 N/A
    58499 2o2l:D (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    58500 2o2l:E (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    58501 2o2l:E (2.53) BS02 FUC ? GO:0005576 ... P0CK94 17586525
    58502 2o2l:F (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    58503 2o2l:F (2.53) BS02 FUC ? GO:0005576 ... P0CK94 17586525
    58504 2o2l:G (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    58505 2o2l:H (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    58506 2o2l:H (2.53) BS02 FUC ? GO:0005576 ... P0CK94 17586525
    58507 2o2l:I (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    58508 2o2l:J (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    58509 2o2l:K (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    58510 2o2l:K (2.53) BS02 FUC ? GO:0005576 ... P0CK94 17586525
    58511 2o2l:L (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    58512 2o2l:M (2.53) BS01 FUC ? GO:0005576 ... P0CK94 17586525
    58513 2o2z:A (2.6) BS01 NAD ? GO:0005737 ... Q9K706 N/A
    58514 2o2z:B (2.6) BS01 NAD ? GO:0005737 ... Q9K706 N/A
    58515 2o2z:C (2.6) BS01 NAD ? GO:0005737 ... Q9K706 N/A
    58516 2o2z:D (2.6) BS01 NAD ? GO:0005737 ... Q9K706 N/A
    58517 2o36:A (1.95) BS01 ZN 3.4.24.15 GO:0000209 ... P52888 17251185
    58518 2o3e:A (2.2) BS01 ZN 3.4.24.16 GO:0004222 ... P42676 17251185
    58519 2o3k:A (2.3) BS01 ZN 3.5.4.1 GO:0003824 ... Q12178 N/A
    58520 2o3k:A (2.3) BS02 HPY 3.5.4.1 GO:0003824 ... Q12178 N/A
    58521 2o3k:B (2.3) BS01 ZN 3.5.4.1 GO:0003824 ... Q12178 N/A
    58522 2o3k:B (2.3) BS02 HPY 3.5.4.1 GO:0003824 ... Q12178 N/A
    58523 2o3p:A (2.24) BS01 QUE 2.7.11.1 GO:0004672 ... P11309 17218638 MOAD: ic50=1.1uM
    PDBbind: -logKd/Ki=5.96, IC50=1.1uM
    BindingDB: IC50=1100nM, Kd=25nM
    58524 2o4c:A (2.3) BS01 PO4 1.1.1.290 GO:0005737 ... Q9I3W9 17217963
    58525 2o4c:A (2.3) BS02 NAD 1.1.1.290 GO:0005737 ... Q9I3W9 17217963
    58526 2o4c:B (2.3) BS01 NAD 1.1.1.290 GO:0005737 ... Q9I3W9 17217963
    58527 2o4h:A (2.7) BS01 ZN 3.5.1.15 GO:0005515 ... P45381 18293939
    58528 2o4h:A (2.7) BS02 AS9 3.5.1.15 GO:0005515 ... P45381 18293939 PDBbind: -logKd/Ki=6.52, Ki=300nM
    58529 2o4h:B (2.7) BS01 ZN 3.5.1.15 GO:0005515 ... P45381 18293939
    58530 2o4h:B (2.7) BS02 AS9 3.5.1.15 GO:0005515 ... P45381 18293939
    58531 2o4m:A (1.64) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58532 2o4m:A (1.64) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58533 2o4m:A (1.64) BS03 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58534 2o4m:A (1.64) BS04 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58535 2o4m:A (1.64) BS05 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58536 2o4m:B (1.64) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58537 2o4m:B (1.64) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58538 2o4m:B (1.64) BS03 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58539 2o4m:B (1.64) BS04 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58540 2o4m:C (1.64) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58541 2o4m:C (1.64) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58542 2o4m:C (1.64) BS03 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58543 2o4m:C (1.64) BS04 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58544 2o4m:C (1.64) BS05 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58545 2o4m:P (1.64) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58546 2o4m:P (1.64) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58547 2o4m:P (1.64) BS03 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58548 2o4m:P (1.64) BS04 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    58549 2o4q:A (1.95) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 18702530
    58550 2o4q:A (1.95) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 18702530
    58551 2o4q:A (1.95) BS03 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    58552 2o4q:B (1.95) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 18702530
    58553 2o4q:B (1.95) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 18702530
    58554 2o4q:B (1.95) BS03 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    58555 2o4q:K (1.95) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 18702530
    58556 2o4q:K (1.95) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 18702530
    58557 2o4q:K (1.95) BS03 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    58558 2o4q:P (1.95) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 18702530
    58559 2o4q:P (1.95) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 18702530
    58560 2o4q:P (1.95) BS03 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    58561 2o4v:A (1.94) BS01 CA ? GO:0006811 ... P05695 17187075
    58562 2o4v:A (1.94) BS02 PO4 ? GO:0006811 ... P05695 17187075
    58563 2o4v:A (1.94) BS03 C8E ? GO:0006811 ... P05695 17187075
    58564 2o4v:A (1.94) BS04 CA ? GO:0006811 ... P05695 17187075
    58565 2o4v:B (1.94) BS01 CA ? GO:0006811 ... P05695 17187075
    58566 2o4v:B (1.94) BS02 C8E ? GO:0006811 ... P05695 17187075
    58567 2o4v:B (1.94) BS03 CA ? GO:0006811 ... P05695 17187075
    58568 2o4v:B (1.94) BS04 PO4 ? GO:0006811 ... P05695 17187075
    58569 2o4v:C (1.94) BS01 CA ? GO:0006811 ... P05695 17187075
    58570 2o4v:C (1.94) BS02 CA ? GO:0006811 ... P05695 17187075
    58571 2o4v:C (1.94) BS03 PO4 ? GO:0006811 ... P05695 17187075
    58572 2o4z:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17346964
    58573 2o4z:A (2.1) BS02 HSW 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17346964 MOAD: Ki=566nM
    PDBbind: -logKd/Ki=6.25, Ki=566nM
    BindingDB: Ki=566nM
    58574 2o51:A (3.0) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    58575 2o51:A (3.0) BS02 CO3 3.4.21.- GO:0005576 ... P24627 N/A
    58576 2o53:A (2.7) BS01 ZN 3.5.1.15 GO:0005515 ... P45381 18293939
    58577 2o53:B (2.7) BS01 ZN 3.5.1.15 GO:0005515 ... P45381 18293939
    58578 2o54:A (2.5) BS01 dna 5.6.2.1 GO:0000287 ... P14294 17331537
    58579 2o54:B (2.5) BS01 dna 5.6.2.1 GO:0000287 ... P14294 17331537
    58580 2o58:X (1.65) BS01 MNR 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 17905436
    58581 2o59:A (2.5) BS01 dna 5.6.2.1 GO:0000287 ... P14294 17331537
    58582 2o59:B (2.5) BS01 dna 5.6.2.1 GO:0000287 ... P14294 17331537
    58583 2o5a:A (2.7) BS01 MN ? GO:0005737 ... Q9KD89 N/A
    58584 2o5b:X (2.0) BS01 MNH 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 17905436
    58585 2o5c:A (2.35) BS01 dna 5.6.2.1 GO:0000287 ... P14294 17331537
    58586 2o5c:B (2.35) BS01 dna 5.6.2.1 GO:0000287 ... P14294 17331537
    58587 2o5e:A (2.5) BS01 dna 5.6.2.1 GO:0000287 ... P14294 17331537
    58588 2o5e:B (2.5) BS01 dna 5.6.2.1 GO:0000287 ... P14294 17331537
    58589 2o5g:A (1.08) BS01 peptide ? GO:0005509 ... P62149 N/A
    58590 2o5g:A (1.08) BS02 CA ? GO:0005509 ... P62149 N/A
    58591 2o5g:A (1.08) BS03 CA ? GO:0005509 ... P62149 N/A
    58592 2o5g:A (1.08) BS04 CA ? GO:0005509 ... P62149 N/A
    58593 2o5g:A (1.08) BS05 CA ? GO:0005509 ... P62149 N/A
    58594 2o5i:C (2.5) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 17581590
    58595 2o5i:C (2.5) BS02 rna 2.7.7.6 GO:0000428 ... Q8RQE9 17581590
    58596 2o5i:D (2.5) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 17581590
    58597 2o5i:D (2.5) BS02 rna 2.7.7.6 GO:0000287 ... Q8RQE8 17581590
    58598 2o5i:D (2.5) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 17581590
    58599 2o5i:D (2.5) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 17581590
    58600 2o5i:D (2.5) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 17581590
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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