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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    583201 8uhd:A (2.8) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583202 8uhd:A (2.8) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583203 8uhd:B (2.8) BS01 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    583204 8uhd:B (2.8) BS02 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    583205 8uhd:B (2.8) BS03 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    583206 8uhd:B (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    583207 8uhd:E (2.8) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38401543
    583208 8uhd:I (2.8) BS01 ZN ? GO:0000428 ... P60899 38401543
    583209 8uhd:I (2.8) BS02 ZN ? GO:0000428 ... P60899 38401543
    583210 8uhd:J (2.8) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    583211 8uhd:L (2.8) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    583212 8uhd:V (2.8) BS01 peptide ? GO:0003723 ... Q8WX92 38401543
    583213 8uhe:B (2.78) BS01 M1V ? GO:0009579 ... B4WKI8 38141759
    583214 8uhe:C (2.78) BS01 M1V ? GO:0009579 ... B4WKI4 38141759
    583215 8uhe:C (2.78) BS02 M1V ? GO:0009579 ... B4WKI4 38141759
    583216 8uhe:J (2.78) BS01 M1V ? GO:0009579 ... B4WIH2 38141759
    583217 8uhe:K (2.78) BS01 M1V ? GO:0009579 ... B4WKI6 38141759
    583218 8uhg:A (2.7) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583219 8uhg:A (2.7) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583220 8uhg:A (2.7) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583221 8uhg:A (2.7) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583222 8uhg:A (2.7) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583223 8uhg:A (2.7) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583224 8uhg:B (2.7) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583225 8uhg:B (2.7) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583226 8uhg:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583227 8uhg:C (2.7) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    583228 8uhg:I (2.7) BS01 ZN ? GO:0000428 ... P60899 38401543
    583229 8uhg:I (2.7) BS02 ZN ? GO:0000428 ... P60899 38401543
    583230 8uhg:J (2.7) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    583231 8uhg:L (2.7) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    583232 8uhi:A (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583233 8uhi:A (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583234 8uhi:B (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583235 8uhi:B (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583236 8uhi:C (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583237 8uhi:C (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583238 8uhi:D (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583239 8uhi:D (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583240 8uhi:E (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583241 8uhi:E (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583242 8uhi:F (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583243 8uhi:F (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583244 8uhi:G (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583245 8uhi:G (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583246 8uhi:H (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583247 8uhi:H (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    583248 8ui0:A (2.7) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583249 8ui0:A (2.7) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583250 8ui0:A (2.7) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583251 8ui0:A (2.7) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583252 8ui0:A (2.7) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583253 8ui0:A (2.7) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583254 8ui0:B (2.7) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583255 8ui0:B (2.7) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583256 8ui0:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583257 8ui0:C (2.7) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    583258 8ui0:I (2.7) BS01 ZN ? GO:0000428 ... P60899 38401543
    583259 8ui0:I (2.7) BS02 ZN ? GO:0000428 ... P60899 38401543
    583260 8ui0:J (2.7) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    583261 8ui0:L (2.7) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    583262 8ui7:B (4.2) BS01 AGS ? GO:0003689 ... P35250 38871854
    583263 8ui7:B (4.2) BS02 AGS ? GO:0003689 ... P35250 38871854
    583264 8ui7:C (4.2) BS01 AGS ? GO:0003689 ... P40937 38871854
    583265 8ui7:D (4.2) BS01 ADP ? GO:0003689 ... P35249 38871854
    583266 8ui7:E (4.2) BS01 ADP ? GO:0000731 ... P40938 38871854
    583267 8ui8:B (3.1) BS01 AGS ? GO:0003689 ... P35250 38871854
    583268 8ui8:B (3.1) BS02 AGS ? GO:0003689 ... P35250 38871854
    583269 8ui8:C (3.1) BS01 AGS ? GO:0003689 ... P40937 38871854
    583270 8ui8:D (3.1) BS01 ADP ? GO:0003689 ... P35249 38871854
    583271 8ui8:E (3.1) BS01 ADP ? GO:0000731 ... P40938 38871854
    583272 8ui9:B (3.5) BS01 AGS ? GO:0003689 ... P35250 38871854
    583273 8ui9:C (3.5) BS01 AGS ? GO:0003689 ... P40937 38871854
    583274 8ui9:D (3.5) BS01 AGS ? GO:0003689 ... P35249 38871854
    583275 8ui9:E (3.5) BS01 ADP ? GO:0000731 ... P40938 38871854
    583276 8uii:A (3.04) BS01 MG ? GO:0003677 ... Q96QE3 38871854
    583277 8uii:A (3.04) BS02 AGS ? GO:0003677 ... Q96QE3 38871854
    583278 8uii:B (3.04) BS01 AGS ? GO:0003689 ... P35250 38871854
    583279 8uii:B (3.04) BS02 AGS ? GO:0003689 ... P35250 38871854
    583280 8uii:C (3.04) BS01 AGS ? GO:0003689 ... P40937 38871854
    583281 8uii:D (3.04) BS01 AGS ? GO:0003689 ... P35249 38871854
    583282 8uii:E (3.04) BS01 ADP ? GO:0000731 ... P40938 38871854
    583283 8uis:A (3.23) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583284 8uis:A (3.23) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583285 8uis:A (3.23) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583286 8uis:A (3.23) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583287 8uis:A (3.23) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583288 8uis:A (3.23) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583289 8uis:B (3.23) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583290 8uis:B (3.23) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583291 8uis:B (3.23) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583292 8uis:C (3.23) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    583293 8uis:I (3.23) BS01 ZN ? GO:0000428 ... P60899 38401543
    583294 8uis:I (3.23) BS02 ZN ? GO:0000428 ... P60899 38401543
    583295 8uis:J (3.23) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    583296 8ujm:A (2.161) BS01 MG ?
    3.1.3.16    		 GO:0016791 ... O95476
    Q8N9A8    		 38776370
    583297 8ujm:B (2.161) BS01 MG ?
    3.1.3.16    		 GO:0016791 ... O95476
    Q8N9A8    		 38776370
    583298 8ujy:A (2.01) BS01 VV3 ? GO:0000122 ... P61964 38085679
    583299 8ujy:B (2.01) BS01 VV3 ? GO:0000122 ... P61964 38085679
    583300 8uk2:a (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583301 8uk2:a (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583302 8uk2:a (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583303 8uk2:b (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583304 8uk2:b (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583305 8uk2:b (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583306 8uk2:c (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583307 8uk2:c (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583308 8uk2:c (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583309 8uk2:d (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583310 8uk2:d (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583311 8uk2:d (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583312 8uk2:e (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583313 8uk2:e (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583314 8uk2:e (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583315 8uk2:f (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583316 8uk2:f (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583317 8uk2:f (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583318 8uk2:g (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583319 8uk2:g (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583320 8uk2:g (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583321 8uk2:h (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583322 8uk2:h (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583323 8uk2:h (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583324 8uk2:i (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583325 8uk2:i (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583326 8uk2:i (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583327 8uk2:j (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583328 8uk2:j (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583329 8uk2:j (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583330 8uk2:k (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583331 8uk2:k (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583332 8uk2:k (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583333 8uk2:l (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583334 8uk2:l (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583335 8uk2:l (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583336 8uk2:m (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583337 8uk2:m (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583338 8uk2:m (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583339 8uk2:n (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583340 8uk2:n (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583341 8uk2:n (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583342 8uk2:o (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583343 8uk2:o (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583344 8uk2:o (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583345 8uk2:p (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583346 8uk2:p (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583347 8uk2:p (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583348 8uk2:q (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583349 8uk2:q (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583350 8uk2:q (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583351 8uk2:r (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583352 8uk2:r (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583353 8uk2:r (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583354 8uk3:a (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583355 8uk3:a (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583356 8uk3:a (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583357 8uk3:b (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583358 8uk3:b (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583359 8uk3:b (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583360 8uk3:c (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583361 8uk3:c (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583362 8uk3:c (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583363 8uk3:d (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583364 8uk3:d (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583365 8uk3:d (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583366 8uk3:e (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583367 8uk3:e (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583368 8uk3:e (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583369 8uk3:f (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583370 8uk3:f (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583371 8uk3:f (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583372 8uk3:g (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583373 8uk3:g (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583374 8uk3:g (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583375 8uk3:h (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583376 8uk3:h (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583377 8uk3:h (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583378 8uk3:i (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583379 8uk3:i (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583380 8uk3:i (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583381 8uk3:j (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583382 8uk3:j (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583383 8uk3:j (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583384 8uk3:k (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583385 8uk3:k (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583386 8uk3:k (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583387 8uk3:l (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583388 8uk3:l (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583389 8uk3:l (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583390 8uk3:m (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583391 8uk3:m (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583392 8uk3:m (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583393 8uk3:n (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583394 8uk3:n (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583395 8uk3:n (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583396 8uk3:o (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583397 8uk3:o (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583398 8uk3:o (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583399 8uk3:p (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583400 8uk3:p (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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