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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    583001 8ugr:4A (6.5) BS01 HEA N/A GO:0004129 ... O79876 38811722
    583002 8ugr:4A (6.5) BS02 HEA N/A GO:0004129 ... O79876 38811722
    583003 8ugr:4A (6.5) BS03 CU N/A GO:0004129 ... O79876 38811722
    583004 8ugr:4A (6.5) BS04 MG N/A GO:0004129 ... O79876 38811722
    583005 8ugr:4B (6.5) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    583006 8ugr:4F (6.5) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    583007 8ugr:5E (6.5) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    583008 8ugr:5F (6.5) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    583009 8ugr:5F (6.5) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    583010 8ugr:5G (6.5) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    583011 8ugr:5G (6.5) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    583012 8ugr:5G (6.5) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    583013 8ugr:5I (6.5) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    583014 8ugr:5I (6.5) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    583015 8ugr:5O (6.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    583016 8ugr:5O (6.5) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    583017 8ugr:5P (6.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    583018 8ugr:5R (6.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    583019 8ugr:5T (6.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    583020 8ugr:5U (6.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    583021 8ugr:5W (6.5) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    583022 8ugr:5q (6.5) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    583023 8ugr:6C (6.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    583024 8ugr:6C (6.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    583025 8ugr:6D (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    583026 8ugr:6E (6.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    583027 8ugr:6P (6.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    583028 8ugr:6P (6.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    583029 8ugr:6Q (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    583030 8ugr:6R (6.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    583031 8ugr:8A (6.5) BS01 HEA N/A GO:0004129 ... O79876 38811722
    583032 8ugr:8A (6.5) BS02 HEA N/A GO:0004129 ... O79876 38811722
    583033 8ugr:8A (6.5) BS03 CU N/A GO:0004129 ... O79876 38811722
    583034 8ugr:8A (6.5) BS04 MG N/A GO:0004129 ... O79876 38811722
    583035 8ugr:8B (6.5) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    583036 8ugr:8F (6.5) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    583037 8ugs:A (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    583038 8ugs:A (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    583039 8ugs:A (3.2) BS03 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    583040 8ugs:B (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    583041 8ugs:B (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    583042 8ugs:B (3.2) BS03 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    583043 8ugy:R (3.31) BS01 CLR ? GO:0001586 ... P28566 38630816
    583044 8ugy:R (3.31) BS02 CLR ? GO:0001586 ... P28566 38630816
    583045 8ugy:R (3.31) BS03 WRU ? GO:0001586 ... P28566 38630816
    583046 8uh3:D (3.31) BS01 CLR ? GO:0001586 ... P28566 38630816
    583047 8uh3:D (3.31) BS02 CLR ? GO:0001586 ... P28566 38630816
    583048 8uh3:D (3.31) BS03 CLR ? GO:0001586 ... P28566 38630816
    583049 8uh3:D (3.31) BS04 WOQ ? GO:0001586 ... P28566 38630816
    583050 8uh4:1 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583051 8uh4:1 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583052 8uh4:2 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583053 8uh4:2 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583054 8uh4:3 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583055 8uh4:3 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583056 8uh4:4 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583057 8uh4:4 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583058 8uh4:5 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583059 8uh4:5 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583060 8uh4:6 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583061 8uh4:6 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583062 8uh4:7 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583063 8uh4:7 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583064 8uh4:8 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583065 8uh4:8 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583066 8uh4:A (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583067 8uh4:A (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583068 8uh4:B (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583069 8uh4:B (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583070 8uh4:C (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583071 8uh4:C (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583072 8uh4:D (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583073 8uh4:D (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583074 8uh4:E (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583075 8uh4:E (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583076 8uh4:F (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583077 8uh4:F (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583078 8uh4:G (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583079 8uh4:G (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583080 8uh4:H (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583081 8uh4:H (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583082 8uh4:I (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583083 8uh4:I (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583084 8uh4:J (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583085 8uh4:J (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583086 8uh4:K (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583087 8uh4:K (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583088 8uh4:L (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583089 8uh4:L (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583090 8uh4:M (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583091 8uh4:M (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583092 8uh4:N (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583093 8uh4:N (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583094 8uh4:O (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583095 8uh4:O (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583096 8uh4:P (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583097 8uh4:P (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583098 8uh4:Q (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583099 8uh4:Q (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583100 8uh4:R (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583101 8uh4:R (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583102 8uh4:S (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583103 8uh4:S (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583104 8uh4:T (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583105 8uh4:T (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583106 8uh4:U (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583107 8uh4:U (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583108 8uh4:V (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583109 8uh4:V (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583110 8uh4:W (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583111 8uh4:W (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583112 8uh4:X (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583113 8uh4:X (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583114 8uh4:Y (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583115 8uh4:Y (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583116 8uh4:Z (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583117 8uh4:Z (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583118 8uh4:a (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583119 8uh4:a (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583120 8uh4:b (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583121 8uh4:b (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583122 8uh4:c (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583123 8uh4:c (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583124 8uh4:d (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583125 8uh4:d (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583126 8uh4:e (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583127 8uh4:e (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583128 8uh4:f (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583129 8uh4:f (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583130 8uh4:g (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583131 8uh4:g (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583132 8uh4:h (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583133 8uh4:h (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583134 8uh4:i (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583135 8uh4:i (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583136 8uh4:j (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583137 8uh4:j (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583138 8uh4:k (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583139 8uh4:k (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583140 8uh4:l (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583141 8uh4:l (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583142 8uh4:m (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583143 8uh4:m (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583144 8uh4:n (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583145 8uh4:n (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583146 8uh4:o (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583147 8uh4:o (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583148 8uh4:p (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583149 8uh4:p (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583150 8uh4:q (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583151 8uh4:q (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583152 8uh4:r (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583153 8uh4:r (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583154 8uh4:s (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583155 8uh4:s (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583156 8uh4:t (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583157 8uh4:t (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583158 8uh4:u (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583159 8uh4:u (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583160 8uh4:v (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583161 8uh4:v (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583162 8uh4:w (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583163 8uh4:w (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583164 8uh4:x (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583165 8uh4:x (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583166 8uh4:y (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583167 8uh4:y (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583168 8uh4:z (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    583169 8uh4:z (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    583170 8uh7:B (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583171 8uh7:B (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    583172 8uh7:B (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    583173 8uh7:C (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583174 8uh7:C (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    583175 8uh7:C (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    583176 8uh7:D (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583177 8uh7:D (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    583178 8uh7:D (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    583179 8uh7:E (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583180 8uh7:E (2.628) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    583181 8uha:A (3.5) BS01 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583182 8uha:A (3.5) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583183 8uha:A (3.5) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583184 8uha:A (3.5) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583185 8uha:A (3.5) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583186 8uha:B (3.5) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583187 8uha:B (3.5) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583188 8uha:B (3.5) BS03 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583189 8uha:B (3.5) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    583190 8uha:C (3.5) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    583191 8uha:I (3.5) BS01 ZN ? GO:0000428 ... P60899 38401543
    583192 8uha:I (3.5) BS02 ZN ? GO:0000428 ... P60899 38401543
    583193 8uha:J (3.5) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    583194 8uha:L (3.5) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    583195 8uha:V (3.5) BS01 peptide ? GO:0003723 ... Q8WX92 38401543
    583196 8uhb:A (3.35) BS01 WV8 ? GO:0001594 ... P07550
    P0ABE7
    Q96RJ0    		 38168118
    583197 8uhd:A (2.8) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583198 8uhd:A (2.8) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583199 8uhd:A (2.8) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    583200 8uhd:A (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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