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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    581801 8ud6:2T (2.7) BS02 rna ? GO:0003735 ... P60490 38359125
    581802 8ud6:2U (2.7) BS01 rna ? GO:0000027 ... P60491 38359125
    581803 8ud6:2U (2.7) BS02 MG ? GO:0000027 ... P60491 38359125
    581804 8ud6:2V (2.7) BS01 rna ? GO:0003723 ... P60492 38359125
    581805 8ud6:2V (2.7) BS02 MG ? GO:0003723 ... P60492 38359125
    581806 8ud6:2W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    581807 8ud6:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    581808 8ud6:2X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    581809 8ud6:2X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    581810 8ud6:2Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    581811 8ud6:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    581812 8ud6:2Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    581813 8ud6:2Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    581814 8ud6:2b (2.7) BS01 rna ? GO:0003735 ... P80371 38359125
    581815 8ud6:2c (2.7) BS01 rna ? GO:0003676 ... P80372 38359125
    581816 8ud6:2d (2.7) BS01 rna ? GO:0003723 ... P80373 38359125
    581817 8ud6:2d (2.7) BS02 MG ? GO:0003723 ... P80373 38359125
    581818 8ud6:2d (2.7) BS03 SF4 ? GO:0003723 ... P80373 38359125
    581819 8ud6:2e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    581820 8ud6:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    581821 8ud6:2f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    581822 8ud6:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    581823 8ud6:2g (2.7) BS01 rna ? GO:0000028 ... P17291 38359125
    581824 8ud6:2g (2.7) BS02 rna ? GO:0000028 ... P17291 38359125
    581825 8ud6:2h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    581826 8ud6:2i (2.7) BS01 rna ? GO:0000049 ... P80374 38359125
    581827 8ud6:2i (2.7) BS02 rna ? GO:0000049 ... P80374 38359125
    581828 8ud6:2j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    581829 8ud6:2k (2.7) BS01 rna ? GO:0003735 ... P80376 38359125
    581830 8ud6:2k (2.7) BS02 MG ? GO:0003735 ... P80376 38359125
    581831 8ud6:2l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    581832 8ud6:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    581833 8ud6:2l (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    581834 8ud6:2l (2.7) BS04 MG ? GO:0000049 ... Q5SHN3 38359125
    581835 8ud6:2m (2.7) BS01 rna ? GO:0000049 ... P80377 38359125
    581836 8ud6:2m (2.7) BS02 rna ? GO:0000049 ... P80377 38359125
    581837 8ud6:2n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    581838 8ud6:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    581839 8ud6:2o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    581840 8ud6:2o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    581841 8ud6:2p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    581842 8ud6:2q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    581843 8ud6:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    581844 8ud6:2q (2.7) BS03 MG ? GO:0003735 ... P0DOY7 38359125
    581845 8ud6:2r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    581846 8ud6:2s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    581847 8ud6:2t (2.7) BS01 rna ? GO:0003723 ... P80380 38359125
    581848 8ud7:10 (2.55) BS01 rna ? GO:0003735 ... P60493 38359125
    581849 8ud7:10 (2.55) BS02 rna ? GO:0003735 ... P60493 38359125
    581850 8ud7:10 (2.55) BS03 MG ? GO:0003735 ... P60493 38359125
    581851 8ud7:10 (2.55) BS04 MG ? GO:0003735 ... P60493 38359125
    581852 8ud7:11 (2.55) BS01 rna ? GO:0003735 ... P60494 38359125
    581853 8ud7:11 (2.55) BS02 MG ? GO:0003735 ... P60494 38359125
    581854 8ud7:12 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    581855 8ud7:12 (2.55) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    581856 8ud7:13 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    581857 8ud7:13 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    581858 8ud7:13 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    581859 8ud7:14 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    581860 8ud7:14 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    581861 8ud7:15 (2.55) BS01 rna ? GO:0003735 ... P80339 38359125
    581862 8ud7:15 (2.55) BS02 MG ? GO:0003735 ... P80339 38359125
    581863 8ud7:15 (2.55) BS03 MG ? GO:0003735 ... P80339 38359125
    581864 8ud7:15 (2.55) BS04 ZN ? GO:0003735 ... P80339 38359125
    581865 8ud7:16 (2.55) BS01 rna ? GO:0000049 ... P35871 38359125
    581866 8ud7:16 (2.55) BS02 MG ? GO:0000049 ... P35871 38359125
    581867 8ud7:16 (2.55) BS03 ZN ? GO:0000049 ... P35871 38359125
    581868 8ud7:17 (2.55) BS01 rna ? GO:0003735 ... P80340 38359125
    581869 8ud7:17 (2.55) BS02 MG ? GO:0003735 ... P80340 38359125
    581870 8ud7:17 (2.55) BS03 MG ? GO:0003735 ... P80340 38359125
    581871 8ud7:18 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    581872 8ud7:18 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    581873 8ud7:18 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    581874 8ud7:18 (2.55) BS04 MG ? GO:0003735 ... Q5SKU1 38359125
    581875 8ud7:19 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    581876 8ud7:19 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    581877 8ud7:1D (2.55) BS01 rna ? GO:0002181 ... P60405 38359125
    581878 8ud7:1D (2.55) BS02 rna ? GO:0002181 ... P60405 38359125
    581879 8ud7:1D (2.55) BS03 MG ? GO:0002181 ... P60405 38359125
    581880 8ud7:1D (2.55) BS04 MG ? GO:0002181 ... P60405 38359125
    581881 8ud7:1D (2.55) BS05 MG ? GO:0002181 ... P60405 38359125
    581882 8ud7:1D (2.55) BS06 MG ? GO:0002181 ... P60405 38359125
    581883 8ud7:1D (2.55) BS07 MG ? GO:0002181 ... P60405 38359125
    581884 8ud7:1D (2.55) BS08 MG ? GO:0002181 ... P60405 38359125
    581885 8ud7:1D (2.55) BS09 MG ? GO:0002181 ... P60405 38359125
    581886 8ud7:1D (2.55) BS10 MG ? GO:0002181 ... P60405 38359125
    581887 8ud7:1D (2.55) BS11 MG ? GO:0002181 ... P60405 38359125
    581888 8ud7:1D (2.55) BS12 MG ? GO:0002181 ... P60405 38359125
    581889 8ud7:1E (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    581890 8ud7:1E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    581891 8ud7:1E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    581892 8ud7:1E (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    581893 8ud7:1E (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    581894 8ud7:1E (2.55) BS06 MG ? GO:0003735 ... Q5SHN8 38359125
    581895 8ud7:1F (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    581896 8ud7:1F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    581897 8ud7:1F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    581898 8ud7:1F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    581899 8ud7:1F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    581900 8ud7:1F (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    581901 8ud7:1F (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    581902 8ud7:1F (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    581903 8ud7:1F (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    581904 8ud7:1F (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 38359125
    581905 8ud7:1F (2.55) BS11 MG ? GO:0003735 ... Q5SHN9 38359125
    581906 8ud7:1F (2.55) BS12 MG ? GO:0003735 ... Q5SHN9 38359125
    581907 8ud7:1G (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    581908 8ud7:1G (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    581909 8ud7:1G (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    581910 8ud7:1G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    581911 8ud7:1H (2.55) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    581912 8ud7:1I (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    581913 8ud7:1I (2.55) BS02 MG ? GO:0003735 ... Q5SLQ1 38359125
    581914 8ud7:1N (2.55) BS01 rna ? GO:0003729 ... P60488 38359125
    581915 8ud7:1N (2.55) BS02 MG ? GO:0003729 ... P60488 38359125
    581916 8ud7:1N (2.55) BS03 MG ? GO:0003729 ... P60488 38359125
    581917 8ud7:1O (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    581918 8ud7:1O (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    581919 8ud7:1O (2.55) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    581920 8ud7:1O (2.55) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    581921 8ud7:1P (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    581922 8ud7:1P (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    581923 8ud7:1P (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    581924 8ud7:1P (2.55) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    581925 8ud7:1P (2.55) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    581926 8ud7:1P (2.55) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    581927 8ud7:1Q (2.55) BS01 rna ? GO:0000049 ... P60489 38359125
    581928 8ud7:1Q (2.55) BS02 rna ? GO:0000049 ... P60489 38359125
    581929 8ud7:1Q (2.55) BS03 rna ? GO:0000049 ... P60489 38359125
    581930 8ud7:1Q (2.55) BS04 MG ? GO:0000049 ... P60489 38359125
    581931 8ud7:1Q (2.55) BS05 MG ? GO:0000049 ... P60489 38359125
    581932 8ud7:1Q (2.55) BS06 MG ? GO:0000049 ... P60489 38359125
    581933 8ud7:1Q (2.55) BS07 MG ? GO:0000049 ... P60489 38359125
    581934 8ud7:1Q (2.55) BS08 MG ? GO:0000049 ... P60489 38359125
    581935 8ud7:1R (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    581936 8ud7:1R (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    581937 8ud7:1R (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    581938 8ud7:1S (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    581939 8ud7:1S (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    581940 8ud7:1S (2.55) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    581941 8ud7:1S (2.55) BS04 MG ? GO:0003735 ... Q5SHQ4 38359125
    581942 8ud7:1T (2.55) BS01 rna ? GO:0003735 ... P60490 38359125
    581943 8ud7:1T (2.55) BS02 rna ? GO:0003735 ... P60490 38359125
    581944 8ud7:1U (2.55) BS01 rna ? GO:0000027 ... P60491 38359125
    581945 8ud7:1U (2.55) BS02 MG ? GO:0000027 ... P60491 38359125
    581946 8ud7:1U (2.55) BS03 MG ? GO:0000027 ... P60491 38359125
    581947 8ud7:1U (2.55) BS04 MG ? GO:0000027 ... P60491 38359125
    581948 8ud7:1U (2.55) BS05 MG ? GO:0000027 ... P60491 38359125
    581949 8ud7:1U (2.55) BS06 MG ? GO:0000027 ... P60491 38359125
    581950 8ud7:1U (2.55) BS07 MG ? GO:0000027 ... P60491 38359125
    581951 8ud7:1U (2.55) BS08 MG ? GO:0000027 ... P60491 38359125
    581952 8ud7:1U (2.55) BS09 MG ? GO:0000027 ... P60491 38359125
    581953 8ud7:1U (2.55) BS10 MG ? GO:0000027 ... P60491 38359125
    581954 8ud7:1U (2.55) BS11 MG ? GO:0000027 ... P60491 38359125
    581955 8ud7:1V (2.55) BS01 rna ? GO:0003723 ... P60492 38359125
    581956 8ud7:1V (2.55) BS02 MG ? GO:0003723 ... P60492 38359125
    581957 8ud7:1V (2.55) BS03 MG ? GO:0003723 ... P60492 38359125
    581958 8ud7:1V (2.55) BS04 MG ? GO:0003723 ... P60492 38359125
    581959 8ud7:1V (2.55) BS05 MG ? GO:0003723 ... P60492 38359125
    581960 8ud7:1V (2.55) BS06 MG ? GO:0003723 ... P60492 38359125
    581961 8ud7:1V (2.55) BS07 MG ? GO:0003723 ... P60492 38359125
    581962 8ud7:1W (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    581963 8ud7:1W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    581964 8ud7:1W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    581965 8ud7:1W (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    581966 8ud7:1W (2.55) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    581967 8ud7:1W (2.55) BS06 MG ? GO:0003735 ... Q5SHP3 38359125
    581968 8ud7:1X (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    581969 8ud7:1X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    581970 8ud7:1X (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    581971 8ud7:1X (2.55) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    581972 8ud7:1X (2.55) BS05 MG ? GO:0000027 ... Q5SHP0 38359125
    581973 8ud7:1X (2.55) BS06 MG ? GO:0000027 ... Q5SHP0 38359125
    581974 8ud7:1Y (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    581975 8ud7:1Y (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    581976 8ud7:1Y (2.55) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    581977 8ud7:1Z (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    581978 8ud7:1Z (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    581979 8ud7:1b (2.55) BS01 rna ? GO:0003735 ... P80371 38359125
    581980 8ud7:1c (2.55) BS01 rna ? GO:0003676 ... P80372 38359125
    581981 8ud7:1d (2.55) BS01 rna ? GO:0003723 ... P80373 38359125
    581982 8ud7:1d (2.55) BS02 SF4 ? GO:0003723 ... P80373 38359125
    581983 8ud7:1e (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    581984 8ud7:1e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    581985 8ud7:1f (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    581986 8ud7:1g (2.55) BS01 rna ? GO:0000028 ... P17291 38359125
    581987 8ud7:1g (2.55) BS02 rna ? GO:0000028 ... P17291 38359125
    581988 8ud7:1h (2.55) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    581989 8ud7:1i (2.55) BS01 rna ? GO:0000049 ... P80374 38359125
    581990 8ud7:1i (2.55) BS02 rna ? GO:0000049 ... P80374 38359125
    581991 8ud7:1j (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    581992 8ud7:1k (2.55) BS01 rna ? GO:0003735 ... P80376 38359125
    581993 8ud7:1k (2.55) BS02 MG ? GO:0003735 ... P80376 38359125
    581994 8ud7:1l (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    581995 8ud7:1l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    581996 8ud7:1m (2.55) BS01 rna ? GO:0000049 ... P80377 38359125
    581997 8ud7:1m (2.55) BS02 rna ? GO:0000049 ... P80377 38359125
    581998 8ud7:1m (2.55) BS03 rna ? GO:0000049 ... P80377 38359125
    581999 8ud7:1m (2.55) BS04 MG ? GO:0000049 ... P80377 38359125
    582000 8ud7:1n (2.55) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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