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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    576401 8sn2:H (3.6) BS02 dna ? GO:0000786 ... P06899 38242129
    576402 8sn3:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    576403 8sn3:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    576404 8sn3:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    576405 8sn3:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    576406 8sn3:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    576407 8sn3:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    576408 8sn3:D (3.8) BS01 dna ? GO:0000786 ... P06899 38242129
    576409 8sn3:D (3.8) BS02 dna ? GO:0000786 ... P06899 38242129
    576410 8sn3:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    576411 8sn3:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    576412 8sn3:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    576413 8sn3:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    576414 8sn3:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    576415 8sn3:H (3.8) BS01 dna ? GO:0000786 ... P06899 38242129
    576416 8sn3:H (3.8) BS02 dna ? GO:0000786 ... P06899 38242129
    576417 8sn3:L (3.8) BS01 dna 2.3.2.23
    2.3.2.24    		 GO:0000122 ... P61077 38242129
    576418 8sn4:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    576419 8sn4:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    576420 8sn4:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    576421 8sn4:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    576422 8sn4:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    576423 8sn4:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    576424 8sn4:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    576425 8sn4:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    576426 8sn4:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    576427 8sn4:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    576428 8sn4:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    576429 8sn4:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    576430 8sn4:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    576431 8sn4:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    576432 8sn4:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    576433 8sn4:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    576434 8sn5:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    576435 8sn5:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    576436 8sn5:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    576437 8sn5:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    576438 8sn5:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    576439 8sn5:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    576440 8sn5:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    576441 8sn5:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    576442 8sn5:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    576443 8sn5:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    576444 8sn5:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    576445 8sn5:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    576446 8sn5:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    576447 8sn5:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    576448 8sn5:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    576449 8sn5:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    576450 8sn6:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    576451 8sn6:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    576452 8sn6:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    576453 8sn6:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    576454 8sn6:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    576455 8sn6:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    576456 8sn6:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    576457 8sn6:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    576458 8sn6:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    576459 8sn6:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    576460 8sn6:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    576461 8sn6:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    576462 8sn6:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    576463 8sn6:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    576464 8sn6:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    576465 8sn7:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    576466 8sn7:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    576467 8sn7:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    576468 8sn7:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    576469 8sn7:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    576470 8sn7:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    576471 8sn7:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    576472 8sn7:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    576473 8sn7:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    576474 8sn7:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    576475 8sn7:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    576476 8sn7:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    576477 8sn7:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    576478 8sn7:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    576479 8sn7:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    576480 8sn7:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    576481 8sn8:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    576482 8sn8:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    576483 8sn8:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    576484 8sn8:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    576485 8sn8:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    576486 8sn8:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    576487 8sn8:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    576488 8sn8:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    576489 8sn8:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    576490 8sn8:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    576491 8sn8:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    576492 8sn8:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    576493 8sn8:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    576494 8sn8:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    576495 8sn9:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    576496 8sn9:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    576497 8sn9:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    576498 8sn9:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    576499 8sn9:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    576500 8sn9:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    576501 8sn9:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    576502 8sn9:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    576503 8sn9:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    576504 8sn9:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    576505 8sn9:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    576506 8sn9:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    576507 8sn9:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    576508 8sn9:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    576509 8sn9:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    576510 8sn9:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    576511 8sna:A (4.0) BS01 dna ? GO:0000786 ... P68431 38242129
    576512 8sna:A (4.0) BS02 dna ? GO:0000786 ... P68431 38242129
    576513 8sna:B (4.0) BS01 dna ? GO:0000781 ... P62805 38242129
    576514 8sna:B (4.0) BS02 dna ? GO:0000781 ... P62805 38242129
    576515 8sna:C (4.0) BS01 dna ? GO:0000786 ... P04908 38242129
    576516 8sna:C (4.0) BS02 dna ? GO:0000786 ... P04908 38242129
    576517 8sna:D (4.0) BS01 dna ? GO:0000786 ... P06899 38242129
    576518 8sna:D (4.0) BS02 dna ? GO:0000786 ... P06899 38242129
    576519 8sna:E (4.0) BS01 dna ? GO:0000786 ... P68431 38242129
    576520 8sna:E (4.0) BS02 dna ? GO:0000786 ... P68431 38242129
    576521 8sna:F (4.0) BS01 dna ? GO:0000781 ... P62805 38242129
    576522 8sna:F (4.0) BS02 dna ? GO:0000781 ... P62805 38242129
    576523 8sna:G (4.0) BS01 dna ? GO:0000786 ... P04908 38242129
    576524 8sna:G (4.0) BS02 dna ? GO:0000786 ... P04908 38242129
    576525 8sna:H (4.0) BS01 dna ? GO:0000786 ... P06899 38242129
    576526 8sna:H (4.0) BS02 dna ? GO:0000786 ... P06899 38242129
    576527 8snb:1y (3.3) BS01 peptide ? GO:0005813 ... A0A7M7PGM9 37327785
    576528 8snb:2R (3.3) BS01 peptide ? GO:0005634 ... A0A7M7REB1 37327785
    576529 8snb:5F (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    576530 8snb:5G (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    576531 8snb:5H (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    576532 8snb:5J (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    576533 8snb:5N (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    576534 8snb:5N (3.3) BS02 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    576535 8snb:8F (3.3) BS01 peptide ? GO:0005929 ... Q9U0E3 37327785
    576536 8snb:8K (3.3) BS01 peptide ? GO:0005737 ... A0A7M7SXG5 37327785
    576537 8snb:8S (3.3) BS01 peptide ? GO:0005737 ... Q26623 37327785
    576538 8snb:AA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576539 8snb:AB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576540 8snb:AC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    576541 8snb:AC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576542 8snb:AD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576543 8snb:AE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576544 8snb:AF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576545 8snb:AG (3.3) BS01 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    576546 8snb:AG (3.3) BS02 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576547 8snb:AH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576548 8snb:AH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    576549 8snb:AI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576550 8snb:AJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576551 8snb:AK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576552 8snb:AL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576553 8snb:AM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576554 8snb:BA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576555 8snb:BB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576556 8snb:BC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576557 8snb:BD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576558 8snb:BE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576559 8snb:BF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576560 8snb:BG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576561 8snb:BH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576562 8snb:BI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576563 8snb:BI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    576564 8snb:BJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576565 8snb:BK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576566 8snb:BK (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    576567 8snb:BL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576568 8snb:BM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576569 8snb:CA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576570 8snb:CA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    576571 8snb:CB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576572 8snb:CB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    576573 8snb:CC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    576574 8snb:CC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576575 8snb:CD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576576 8snb:CE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576577 8snb:CF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576578 8snb:CF (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    576579 8snb:CG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576580 8snb:CH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576581 8snb:CI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576582 8snb:CI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    576583 8snb:CJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576584 8snb:CK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576585 8snb:CL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576586 8snb:CM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576587 8snb:DA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576588 8snb:DB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576589 8snb:DB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    576590 8snb:DC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576591 8snb:DD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576592 8snb:DD (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    576593 8snb:DE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576594 8snb:DF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576595 8snb:DG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576596 8snb:DH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576597 8snb:DH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    576598 8snb:DI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    576599 8snb:DJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    576600 8snb:DJ (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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