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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    576201 8sly:D (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    576202 8sm6:A (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    576203 8sm6:A (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    576204 8sm6:B (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    576205 8sm6:B (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    576206 8sm6:C (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    576207 8sm6:C (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    576208 8sm6:D (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    576209 8sm6:D (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    576210 8sm7:A (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    576211 8sm7:A (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    576212 8sm7:B (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    576213 8sm7:B (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    576214 8sm7:D (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    576215 8sm7:D (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    576216 8sm7:G (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    576217 8sm7:G (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    576218 8sm8:A (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    576219 8sm8:A (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    576220 8sm8:A (2.0) BS03 MG ? GO:0005737 ... B6JH23 38198693
    576221 8sm8:A (2.0) BS04 MG ? GO:0005737 ... B6JH23 38198693
    576222 8sm8:D (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    576223 8sm8:D (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    576224 8sm8:G (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    576225 8sm8:G (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    576226 8sm8:J (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    576227 8sm8:J (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    576228 8sm9:B (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    576229 8sm9:B (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    576230 8sm9:D (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    576231 8sm9:D (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    576232 8sm9:F (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    576233 8sm9:F (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    576234 8sm9:H (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    576235 8sm9:H (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    576236 8sma:A (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    576237 8sma:A (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    576238 8sma:B (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    576239 8sma:B (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    576240 8sma:G (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    576241 8sma:G (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    576242 8sma:J (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    576243 8sma:J (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    576244 8smk:A (3.5) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576245 8smk:A (3.5) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576246 8smk:A (3.5) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576247 8smk:A (3.5) BS04 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576248 8smk:D (3.5) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576249 8smk:D (3.5) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576250 8smk:D (3.5) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576251 8smk:D (3.5) BS04 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576252 8sml:A (3.3) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576253 8sml:A (3.3) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576254 8sml:A (3.3) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576255 8sml:D (3.3) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576256 8sml:D (3.3) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576257 8sml:D (3.3) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    576258 8smn:A (3.2) BS01 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    576259 8smn:A (3.2) BS02 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    576260 8smn:A (3.2) BS03 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    576261 8smp:A (3.4) BS01 UDP 2.4.1.212 GO:0016020 ... P13563 N/A
    576262 8smr:C (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    576263 8smr:C (2.7) BS02 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    576264 8smr:D (2.7) BS01 I7Y ? GO:0005886 ... Q9HVY5 37751552
    576265 8smr:D (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    576266 8smr:D (2.7) BS03 HEM ? GO:0005886 ... Q9HVY5 37751552
    576267 8smr:D (2.7) BS04 U10 ? GO:0005886 ... Q9HVY5 37751552
    576268 8smr:E (2.7) BS01 CU 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    576269 8smr:E (2.7) BS02 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    576270 8smr:E (2.7) BS03 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    576271 8smr:F (2.7) BS01 CA ? GO:0004129 ... Q9I3G4 37751552
    576272 8smr:F (2.7) BS02 HEC ? GO:0004129 ... Q9I3G4 37751552
    576273 8smr:G (2.7) BS01 HEC ? GO:0004129 ... Q9I3G5 37751552
    576274 8smr:G (2.7) BS02 HEC ? GO:0004129 ... Q9I3G5 37751552
    576275 8smr:I (2.7) BS01 HEM ? GO:0005886 ... Q9HVY5 37751552
    576276 8smr:I (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    576277 8smr:I (2.7) BS03 U10 ? GO:0005886 ... Q9HVY5 37751552
    576278 8smr:I (2.7) BS04 I7Y ? GO:0005886 ... Q9HVY5 37751552
    576279 8smr:J (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    576280 8smr:J (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    576281 8smr:K (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    576282 8smr:K (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    576283 8smr:K (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    576284 8smr:M (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    576285 8smr:M (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    576286 8smr:N (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    576287 8smr:N (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    576288 8smr:N (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    576289 8smr:Z (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    576290 8smr:Z (2.7) BS02 I7Y 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    576291 8smr:Z (2.7) BS03 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    576292 8sms:A (1.93) BS01 G7U 2.3.1.41 GO:0004315 ... P0A953 37829009
    576293 8sms:B (1.93) BS01 G7U 2.3.1.41 GO:0004315 ... P0A953 37829009
    576294 8smw:A (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    576295 8smw:A (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    576296 8smw:B (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    576297 8smw:B (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    576298 8smw:C (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    576299 8smw:C (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    576300 8smw:D (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    576301 8smw:D (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    576302 8smw:E (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    576303 8smw:E (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    576304 8smw:F (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    576305 8smw:F (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    576306 8smw:G (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    576307 8smw:G (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    576308 8smw:H (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    576309 8smx:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    576310 8smx:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    576311 8smx:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    576312 8smx:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    576313 8smx:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    576314 8smx:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    576315 8smx:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    576316 8smx:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    576317 8smx:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    576318 8smx:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    576319 8smx:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    576320 8smx:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    576321 8smx:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    576322 8smx:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    576323 8smx:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    576324 8smx:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    576325 8smy:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    576326 8smy:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    576327 8smy:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    576328 8smy:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    576329 8smy:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    576330 8smy:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    576331 8smy:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    576332 8smy:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    576333 8smy:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    576334 8smy:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    576335 8smy:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    576336 8smy:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    576337 8smy:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    576338 8smy:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    576339 8smy:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    576340 8smz:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    576341 8smz:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    576342 8smz:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    576343 8smz:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    576344 8smz:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    576345 8smz:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    576346 8smz:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    576347 8smz:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    576348 8smz:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    576349 8smz:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    576350 8smz:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    576351 8smz:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    576352 8smz:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    576353 8smz:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    576354 8smz:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    576355 8sn0:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    576356 8sn0:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    576357 8sn0:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    576358 8sn0:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    576359 8sn0:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    576360 8sn0:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    576361 8sn0:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    576362 8sn0:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    576363 8sn0:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    576364 8sn0:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    576365 8sn0:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    576366 8sn0:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    576367 8sn0:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    576368 8sn0:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    576369 8sn0:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    576370 8sn0:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    576371 8sn1:A (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    576372 8sn1:A (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    576373 8sn1:B (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    576374 8sn1:B (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    576375 8sn1:C (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    576376 8sn1:C (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    576377 8sn1:D (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    576378 8sn1:D (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    576379 8sn1:E (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    576380 8sn1:E (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    576381 8sn1:F (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    576382 8sn1:F (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    576383 8sn1:G (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    576384 8sn1:G (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    576385 8sn1:H (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    576386 8sn1:H (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    576387 8sn2:A (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    576388 8sn2:A (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    576389 8sn2:B (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    576390 8sn2:B (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    576391 8sn2:C (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    576392 8sn2:C (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    576393 8sn2:D (3.6) BS01 dna ? GO:0000786 ... P06899 38242129
    576394 8sn2:D (3.6) BS02 dna ? GO:0000786 ... P06899 38242129
    576395 8sn2:E (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    576396 8sn2:E (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    576397 8sn2:F (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    576398 8sn2:G (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    576399 8sn2:G (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    576400 8sn2:H (3.6) BS01 dna ? GO:0000786 ... P06899 38242129
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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