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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    575601 8shd:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    575602 8shd:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575603 8shd:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    575604 8shd:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575605 8shd:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575606 8shd:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575607 8shd:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    575608 8shd:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575609 8shd:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    575610 8shd:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575611 8she:A (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    575612 8she:A (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575613 8she:B (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    575614 8she:B (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575615 8she:D (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    575616 8she:D (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575617 8she:E (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    575618 8she:E (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575619 8she:G (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    575620 8she:G (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575621 8she:H (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575622 8she:H (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575623 8she:Q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    575624 8she:Q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575625 8she:Z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    575626 8she:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    575627 8she:Z (2.8) BS03 AF3 ? GO:0003723 ... P40227 37852256
    575628 8she:a (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    575629 8she:a (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575630 8she:b (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    575631 8she:b (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575632 8she:d (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    575633 8she:d (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575634 8she:e (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    575635 8she:e (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575636 8she:g (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    575637 8she:g (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575638 8she:h (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575639 8she:h (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575640 8she:q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    575641 8she:q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575642 8she:z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    575643 8she:z (2.8) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575644 8shf:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    575645 8shf:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575646 8shf:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    575647 8shf:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575648 8shf:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    575649 8shf:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575650 8shf:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    575651 8shf:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575652 8shf:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    575653 8shf:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575654 8shf:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575655 8shf:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575656 8shf:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    575657 8shf:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575658 8shf:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    575659 8shf:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575660 8shf:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    575661 8shf:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575662 8shf:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    575663 8shf:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575664 8shf:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    575665 8shf:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575666 8shf:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    575667 8shf:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575668 8shf:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    575669 8shf:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575670 8shf:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575671 8shf:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575672 8shf:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    575673 8shf:q (3.0) BS02 MG ? GO:0002199 ... P50990 37852256
    575674 8shf:q (3.0) BS03 AF3 ? GO:0002199 ... P50990 37852256
    575675 8shf:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    575676 8shf:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575677 8shg:A (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    575678 8shg:A (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575679 8shg:B (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    575680 8shg:B (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575681 8shg:D (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    575682 8shg:D (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575683 8shg:E (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    575684 8shg:E (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575685 8shg:G (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    575686 8shg:G (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575687 8shg:H (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575688 8shg:H (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575689 8shg:Q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    575690 8shg:Q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575691 8shg:Z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    575692 8shg:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    575693 8shg:Z (2.8) BS03 AF3 ? GO:0003723 ... P40227 37852256
    575694 8shg:a (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    575695 8shg:a (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575696 8shg:b (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    575697 8shg:b (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575698 8shg:d (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    575699 8shg:d (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575700 8shg:e (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    575701 8shg:e (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575702 8shg:g (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    575703 8shg:g (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575704 8shg:h (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575705 8shg:h (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575706 8shg:q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    575707 8shg:q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575708 8shg:z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    575709 8shg:z (2.8) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575710 8shl:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    575711 8shl:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575712 8shl:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    575713 8shl:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575714 8shl:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    575715 8shl:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575716 8shl:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    575717 8shl:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575718 8shl:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    575719 8shl:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575720 8shl:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575721 8shl:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575722 8shl:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    575723 8shl:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575724 8shl:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    575725 8shl:Z (3.0) BS02 MG ? GO:0003723 ... P40227 37852256
    575726 8shl:Z (3.0) BS03 AF3 ? GO:0003723 ... P40227 37852256
    575727 8shl:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    575728 8shl:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575729 8shl:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    575730 8shl:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575731 8shl:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    575732 8shl:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575733 8shl:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    575734 8shl:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575735 8shl:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    575736 8shl:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575737 8shl:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575738 8shl:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575739 8shl:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    575740 8shl:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575741 8shl:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    575742 8shl:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575743 8shn:A (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    575744 8shn:A (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575745 8shn:B (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    575746 8shn:B (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575747 8shn:D (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    575748 8shn:D (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575749 8shn:E (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    575750 8shn:E (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575751 8shn:G (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    575752 8shn:G (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575753 8shn:H (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575754 8shn:H (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575755 8shn:Q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    575756 8shn:Q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575757 8shn:Z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    575758 8shn:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    575759 8shn:Z (2.8) BS03 AF3 ? GO:0003723 ... P40227 37852256
    575760 8shn:a (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    575761 8shn:a (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575762 8shn:b (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    575763 8shn:b (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575764 8shn:d (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    575765 8shn:d (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575766 8shn:e (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    575767 8shn:e (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575768 8shn:g (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    575769 8shn:g (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575770 8shn:h (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575771 8shn:h (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575772 8shn:q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    575773 8shn:q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575774 8shn:z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    575775 8shn:z (2.8) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575776 8sho:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    575777 8sho:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575778 8sho:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    575779 8sho:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575780 8sho:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    575781 8sho:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575782 8sho:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    575783 8sho:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575784 8sho:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    575785 8sho:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575786 8sho:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575787 8sho:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575788 8sho:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    575789 8sho:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575790 8sho:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    575791 8sho:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575792 8sho:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    575793 8sho:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575794 8sho:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    575795 8sho:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575796 8sho:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    575797 8sho:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575798 8sho:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    575799 8sho:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575800 8sho:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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