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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    575401 8sgs:B (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    575402 8sgs:B (3.15) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    575403 8sgs:B (3.15) BS03 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    575404 8sgs:C (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    575405 8sgs:C (3.15) BS02 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    575406 8sgs:C (3.15) BS03 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    575407 8sgs:D (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    575408 8sgs:D (3.15) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    575409 8sgs:D (3.15) BS03 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    575410 8sgt:A (3.6) BS01 CA ? GO:0005432 ... P32418 37794011
    575411 8sgt:A (3.6) BS02 CA ? GO:0005432 ... P32418 37794011
    575412 8sgt:A (3.6) BS03 CA ? GO:0005432 ... P32418 37794011
    575413 8sgt:A (3.6) BS04 CA ? GO:0005432 ... P32418 37794011
    575414 8sgt:A (3.6) BS05 CA ? GO:0005432 ... P32418 37794011
    575415 8sgt:A (3.6) BS06 CA ? GO:0005432 ... P32418 37794011
    575416 8sgv:A (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    575417 8sgv:A (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    575418 8sgv:B (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    575419 8sgv:B (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    575420 8sgv:C (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    575421 8sgv:C (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    575422 8sgv:D (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    575423 8sgv:D (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    575424 8sgw:C (2.5) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    575425 8sgw:C (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    575426 8sgw:C (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    575427 8sgw:C (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    575428 8sgw:C (2.5) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    575429 8sgw:C (2.5) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    575430 8sgw:C (2.5) BS07 LBN ? GO:0005886 ... I3L8V6 38184688
    575431 8sgw:C (2.5) BS08 LBN ? GO:0005886 ... I3L8V6 38184688
    575432 8sgw:C (2.5) BS09 CL ? GO:0005886 ... I3L8V6 38184688
    575433 8sgw:C (2.5) BS10 AV0 ? GO:0005886 ... I3L8V6 38184688
    575434 8sgw:C (2.5) BS11 LBN ? GO:0005886 ... I3L8V6 38184688
    575435 8sgw:D (2.5) BS01 LBN ? GO:0005886 ... I3L8V6 38184688
    575436 8sgw:D (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    575437 8sgw:D (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    575438 8sgw:D (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    575439 8sgw:D (2.5) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    575440 8sgw:D (2.5) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    575441 8sgw:D (2.5) BS07 LBN ? GO:0005886 ... I3L8V6 38184688
    575442 8sgw:D (2.5) BS08 LBN ? GO:0005886 ... I3L8V6 38184688
    575443 8sgw:D (2.5) BS09 LBN ? GO:0005886 ... I3L8V6 38184688
    575444 8sgw:D (2.5) BS10 CL ? GO:0005886 ... I3L8V6 38184688
    575445 8sgw:D (2.5) BS11 AV0 ? GO:0005886 ... I3L8V6 38184688
    575446 8sgx:C (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575447 8sgx:E (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575448 8sgx:F (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575449 8sgx:G (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575450 8sgx:H (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575451 8sgx:S (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575452 8sgx:V (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575453 8sgx:X (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575454 8sgx:Z (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575455 8sgy:B (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575456 8sgy:C (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575457 8sgy:D (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575458 8sgy:E (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575459 8sgy:G (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575460 8sgy:S (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575461 8sgy:V (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575462 8sgy:Y (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575463 8sgy:Z (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575464 8sgz:B (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575465 8sgz:C (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575466 8sgz:D (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575467 8sgz:E (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575468 8sgz:F (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575469 8sgz:G (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575470 8sgz:H (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    575471 8sgz:S (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575472 8sgz:V (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575473 8sgz:X (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575474 8sgz:Y (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575475 8sgz:Z (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    575476 8sh0:A (2.16) BS01 dna ? GO:0000723 ... Q9NUX5 37590346
    575477 8sh1:A (2.6) BS01 dna ? GO:0000723 ... Q9NUX5 37590346
    575478 8sh1:A (2.6) BS02 dna ? GO:0000723 ... Q9NUX5 37590346
    575479 8sh3:C (2.8) BS01 AV0 ? GO:0005886 ... I3L8V6 38184688
    575480 8sh3:C (2.8) BS02 IOD ? GO:0005886 ... I3L8V6 38184688
    575481 8sh3:C (2.8) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    575482 8sh3:C (2.8) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    575483 8sh3:C (2.8) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    575484 8sh3:C (2.8) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    575485 8sh3:C (2.8) BS07 CLR ? GO:0005886 ... I3L8V6 38184688
    575486 8sh3:C (2.8) BS08 LBN ? GO:0005886 ... I3L8V6 38184688
    575487 8sh3:C (2.8) BS09 LBN ? GO:0005886 ... I3L8V6 38184688
    575488 8sh3:D (2.8) BS01 LBN ? GO:0005886 ... I3L8V6 38184688
    575489 8sh3:D (2.8) BS02 AV0 ? GO:0005886 ... I3L8V6 38184688
    575490 8sh3:D (2.8) BS03 IOD ? GO:0005886 ... I3L8V6 38184688
    575491 8sh3:D (2.8) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    575492 8sh3:D (2.8) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    575493 8sh3:D (2.8) BS06 CLR ? GO:0005886 ... I3L8V6 38184688
    575494 8sh3:D (2.8) BS07 LBN ? GO:0005886 ... I3L8V6 38184688
    575495 8sh3:D (2.8) BS08 CLR ? GO:0005886 ... I3L8V6 38184688
    575496 8sh3:D (2.8) BS09 LBN ? GO:0005886 ... I3L8V6 38184688
    575497 8sh7:A (2.8) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 N/A
    575498 8sh7:B (2.8) BS01 GDP ? GO:0000226 ... P68371 N/A
    575499 8sh9:A (2.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    575500 8sh9:A (2.7) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575501 8sh9:B (2.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    575502 8sh9:B (2.7) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575503 8sh9:D (2.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    575504 8sh9:D (2.7) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575505 8sh9:E (2.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    575506 8sh9:E (2.7) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575507 8sh9:G (2.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    575508 8sh9:G (2.7) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575509 8sh9:H (2.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575510 8sh9:H (2.7) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575511 8sh9:Q (2.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    575512 8sh9:Q (2.7) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575513 8sh9:Z (2.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    575514 8sh9:Z (2.7) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575515 8sh9:a (2.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    575516 8sh9:a (2.7) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575517 8sh9:b (2.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    575518 8sh9:b (2.7) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575519 8sh9:d (2.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    575520 8sh9:d (2.7) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575521 8sh9:e (2.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    575522 8sh9:e (2.7) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575523 8sh9:g (2.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    575524 8sh9:g (2.7) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575525 8sh9:h (2.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575526 8sh9:h (2.7) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575527 8sh9:q (2.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    575528 8sh9:q (2.7) BS02 MG ? GO:0002199 ... P50990 37852256
    575529 8sh9:q (2.7) BS03 AF3 ? GO:0002199 ... P50990 37852256
    575530 8sh9:z (2.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    575531 8sh9:z (2.7) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575532 8sha:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    575533 8sha:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575534 8sha:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    575535 8sha:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575536 8sha:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    575537 8sha:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575538 8sha:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    575539 8sha:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575540 8sha:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    575541 8sha:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575542 8sha:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575543 8sha:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575544 8sha:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    575545 8sha:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575546 8sha:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    575547 8sha:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575548 8sha:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    575549 8sha:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575550 8sha:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    575551 8sha:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575552 8sha:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    575553 8sha:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575554 8sha:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    575555 8sha:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575556 8sha:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    575557 8sha:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575558 8sha:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575559 8sha:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575560 8sha:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    575561 8sha:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575562 8sha:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    575563 8sha:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575564 8shc:C (3.0) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    575565 8shc:C (3.0) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    575566 8shc:C (3.0) BS03 LBN ? GO:0005886 ... I3L8V6 38184688
    575567 8shc:C (3.0) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    575568 8shc:C (3.0) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    575569 8shc:C (3.0) BS06 NFL ? GO:0005886 ... I3L8V6 38184688
    575570 8shc:C (3.0) BS07 NFL ? GO:0005886 ... I3L8V6 38184688
    575571 8shc:D (3.0) BS01 LBN ? GO:0005886 ... I3L8V6 38184688
    575572 8shc:D (3.0) BS02 NFL ? GO:0005886 ... I3L8V6 38184688
    575573 8shc:D (3.0) BS03 NFL ? GO:0005886 ... I3L8V6 38184688
    575574 8shc:D (3.0) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    575575 8shc:D (3.0) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    575576 8shc:D (3.0) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    575577 8shc:D (3.0) BS07 CLR ? GO:0005886 ... I3L8V6 38184688
    575578 8shd:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    575579 8shd:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575580 8shd:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    575581 8shd:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575582 8shd:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    575583 8shd:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575584 8shd:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    575585 8shd:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575586 8shd:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    575587 8shd:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575588 8shd:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575589 8shd:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575590 8shd:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    575591 8shd:Q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575592 8shd:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    575593 8shd:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    575594 8shd:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    575595 8shd:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    575596 8shd:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575597 8shd:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    575598 8shd:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575599 8shd:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    575600 8shd:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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