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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    575201 8sg5:H (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575202 8sg5:H (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575203 8sg5:H (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575204 8sg7:B (2.4) BS01 peptide ? GO:0005737 ... P52293 38441555
    575205 8sg8:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    575206 8sg8:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575207 8sg8:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    575208 8sg8:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575209 8sg8:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    575210 8sg8:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575211 8sg8:E (3.0) BS01 peptide ? GO:0003730 ... P48643 37852256
    575212 8sg8:E (3.0) BS02 ADP ? GO:0003730 ... P48643 37852256
    575213 8sg8:E (3.0) BS03 AF3 ? GO:0003730 ... P48643 37852256
    575214 8sg8:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    575215 8sg8:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575216 8sg8:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575217 8sg8:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575218 8sg8:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    575219 8sg8:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575220 8sg8:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    575221 8sg8:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575222 8sg8:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    575223 8sg8:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575224 8sg8:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    575225 8sg8:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575226 8sg8:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    575227 8sg8:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575228 8sg8:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    575229 8sg8:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575230 8sg8:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    575231 8sg8:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575232 8sg8:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575233 8sg8:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575234 8sg8:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    575235 8sg8:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575236 8sg8:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    575237 8sg8:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575238 8sg9:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    575239 8sg9:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575240 8sg9:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    575241 8sg9:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575242 8sg9:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    575243 8sg9:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575244 8sg9:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    575245 8sg9:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575246 8sg9:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    575247 8sg9:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575248 8sg9:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575249 8sg9:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575250 8sg9:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    575251 8sg9:Q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575252 8sg9:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    575253 8sg9:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    575254 8sg9:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    575255 8sg9:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    575256 8sg9:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575257 8sg9:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    575258 8sg9:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575259 8sg9:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    575260 8sg9:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575261 8sg9:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    575262 8sg9:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575263 8sg9:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    575264 8sg9:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575265 8sg9:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575266 8sg9:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575267 8sg9:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    575268 8sg9:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575269 8sg9:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    575270 8sg9:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575271 8sgc:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    575272 8sgc:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575273 8sgc:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    575274 8sgc:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575275 8sgc:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    575276 8sgc:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575277 8sgc:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    575278 8sgc:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575279 8sgc:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    575280 8sgc:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575281 8sgc:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575282 8sgc:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575283 8sgc:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    575284 8sgc:Q (2.9) BS02 MG ? GO:0002199 ... P50990 37852256
    575285 8sgc:Q (2.9) BS03 AF3 ? GO:0002199 ... P50990 37852256
    575286 8sgc:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    575287 8sgc:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    575288 8sgc:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    575289 8sgc:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    575290 8sgc:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575291 8sgc:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    575292 8sgc:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575293 8sgc:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    575294 8sgc:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575295 8sgc:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    575296 8sgc:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575297 8sgc:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    575298 8sgc:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575299 8sgc:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575300 8sgc:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575301 8sgc:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    575302 8sgc:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575303 8sgc:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    575304 8sgc:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575305 8sgd:A (2.66) BS01 GDP ? GO:0000144 ... P25342 37315820
    575306 8sgd:A (2.66) BS02 GTP ? GO:0000144 ... P25342 37315820
    575307 8sgd:C (2.66) BS01 GDP ? GO:0000144 ... P25342 37315820
    575308 8sgd:C (2.66) BS02 GTP ? GO:0000144 ... P25342 37315820
    575309 8sgh:A (3.17) BS01 peptide ? GO:0003723 ... Q92973 37279758
    575310 8sgi:A (2.9) BS01 EKY ? GO:0005432 ... P32418 N/A
    575311 8sgi:A (2.9) BS02 CA ? GO:0005432 ... P32418 N/A
    575312 8sgi:A (2.9) BS03 CA ? GO:0005432 ... P32418 N/A
    575313 8sgi:A (2.9) BS04 CA ? GO:0005432 ... P32418 N/A
    575314 8sgi:A (2.9) BS05 CA ? GO:0005432 ... P32418 N/A
    575315 8sgi:A (2.9) BS06 CA ? GO:0005432 ... P32418 N/A
    575316 8sgi:A (2.9) BS07 CA ? GO:0005432 ... P32418 N/A
    575317 8sgj:A (3.1) BS01 CA ? GO:0005432 ... P32418 37794011
    575318 8sgj:A (3.1) BS02 CA ? GO:0005432 ... P32418 37794011
    575319 8sgj:A (3.1) BS03 CA ? GO:0005432 ... P32418 37794011
    575320 8sgj:A (3.1) BS04 CA ? GO:0005432 ... P32418 37794011
    575321 8sgj:A (3.1) BS05 CA ? GO:0005432 ... P32418 37794011
    575322 8sgj:A (3.1) BS06 CA ? GO:0005432 ... P32418 37794011
    575323 8sgj:A (3.1) BS07 NA ? GO:0005432 ... P32418 37794011
    575324 8sgj:A (3.1) BS08 NA ? GO:0005432 ... P32418 37794011
    575325 8sgj:A (3.1) BS09 NA ? GO:0005432 ... P32418 37794011
    575326 8sgl:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    575327 8sgl:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575328 8sgl:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    575329 8sgl:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575330 8sgl:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    575331 8sgl:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575332 8sgl:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    575333 8sgl:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575334 8sgl:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    575335 8sgl:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575336 8sgl:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575337 8sgl:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575338 8sgl:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    575339 8sgl:Q (2.9) BS02 MG ? GO:0002199 ... P50990 37852256
    575340 8sgl:Q (2.9) BS03 AF3 ? GO:0002199 ... P50990 37852256
    575341 8sgl:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    575342 8sgl:Z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575343 8sgl:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    575344 8sgl:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575345 8sgl:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    575346 8sgl:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575347 8sgl:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    575348 8sgl:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575349 8sgl:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    575350 8sgl:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575351 8sgl:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    575352 8sgl:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575353 8sgl:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575354 8sgl:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575355 8sgl:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    575356 8sgl:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575357 8sgl:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    575358 8sgl:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575359 8sgo:A (2.65) BS01 ABU ? GO:0004888 ... P47870 37607940
    575360 8sgo:B (2.65) BS01 ABU ? GO:0004888 ... P14867 37607940
    575361 8sgo:C (2.65) BS01 ABU ? GO:0004888 ... P47870 37607940
    575362 8sgo:C (2.65) BS02 Q3G ? GO:0004888 ... P47870 37607940
    575363 8sgo:D (2.65) BS01 ABU ? GO:0004888 ... P14867 37607940
    575364 8sgo:E (2.65) BS01 MAN ? GO:0004888 ... P18507 37607940
    575365 8sgo:E (2.65) BS02 A8W ? GO:0004888 ... P18507 37607940
    575366 8sgp:A (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    575367 8sgp:A (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    575368 8sgp:B (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    575369 8sgp:B (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    575370 8sgp:C (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    575371 8sgp:C (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    575372 8sgp:D (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    575373 8sgp:D (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    575374 8sgq:A (3.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    575375 8sgq:B (3.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    575376 8sgq:D (3.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    575377 8sgq:E (3.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    575378 8sgq:G (3.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    575379 8sgq:H (3.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575380 8sgq:Q (3.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    575381 8sgq:Z (3.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    575382 8sgq:a (3.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    575383 8sgq:b (3.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    575384 8sgq:d (3.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    575385 8sgq:e (3.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    575386 8sgq:g (3.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    575387 8sgq:h (3.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575388 8sgq:q (3.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    575389 8sgq:z (3.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    575390 8sgr:A (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    575391 8sgr:A (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    575392 8sgr:B (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    575393 8sgr:B (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    575394 8sgr:C (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    575395 8sgr:C (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    575396 8sgr:D (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    575397 8sgr:D (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    575398 8sgs:A (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    575399 8sgs:A (3.15) BS02 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    575400 8sgs:A (3.15) BS03 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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