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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    575001 8sf7:QG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575002 8sf7:QG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    575003 8sf7:QH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575004 8sf7:QH (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    575005 8sf7:QI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575006 8sf7:QJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575007 8sf7:QK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575008 8sf7:QL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575009 8sf7:QM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575010 8sf7:QN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575011 8sf7:RA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575012 8sf7:RB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575013 8sf7:RC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575014 8sf7:RD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575015 8sf7:RE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575016 8sf7:RF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575017 8sf7:RG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575018 8sf7:RH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575019 8sf7:RI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575020 8sf7:RJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575021 8sf7:RK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575022 8sf7:RL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575023 8sf7:RL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    575024 8sf7:RM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575025 8sf7:RN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575026 8sf7:SA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575027 8sf7:SB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575028 8sf7:SB (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    575029 8sf7:SC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575030 8sf7:SD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575031 8sf7:SE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575032 8sf7:SF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575033 8sf7:SG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575034 8sf7:SH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575035 8sf7:SI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575036 8sf7:SJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575037 8sf7:SK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575038 8sf7:SL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575039 8sf7:SL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    575040 8sf7:SM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575041 8sf7:SN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575042 8sf7:TA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575043 8sf7:TB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575044 8sf7:TC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575045 8sf7:TD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575046 8sf7:TE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575047 8sf7:TF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575048 8sf7:TG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575049 8sf7:TH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575050 8sf7:TI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575051 8sf7:TJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575052 8sf7:TK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575053 8sf7:TL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575054 8sf7:TM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575055 8sf7:TN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575056 8sf7:UA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575057 8sf7:UB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575058 8sf7:UC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575059 8sf7:UD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575060 8sf7:UE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575061 8sf7:UF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575062 8sf7:UG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575063 8sf7:UH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575064 8sf7:UI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575065 8sf7:UJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575066 8sf7:UJ (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    575067 8sf7:UK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575068 8sf7:UL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575069 8sf7:UL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    575070 8sf7:UM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575071 8sf7:UN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575072 8sf7:VA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575073 8sf7:VB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575074 8sf7:VC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575075 8sf7:VD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    575076 8sf7:VD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    575077 8sf7:VE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575078 8sf7:VF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575079 8sf7:VG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575080 8sf7:VH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575081 8sf7:VI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575082 8sf7:VJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575083 8sf7:VK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575084 8sf7:VK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    575085 8sf7:VL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575086 8sf7:VM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575087 8sf7:VM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    575088 8sf7:VN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575089 8sf7:WA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575090 8sf7:WB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575091 8sf7:WC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575092 8sf7:WC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    575093 8sf7:WD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575094 8sf7:WE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575095 8sf7:WF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575096 8sf7:WG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575097 8sf7:WH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575098 8sf7:WI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575099 8sf7:WJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575100 8sf7:WK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575101 8sf7:WL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575102 8sf7:WM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    575103 8sf7:WN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575104 8sf8:A (1.7) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 38330278
    575105 8sf8:A (1.7) BS02 ZWG 2.7.11.11 GO:0001669 ... P00517 38330278
    575106 8sfe:A (3.36) BS01 ADP ? GO:0000242 ... P17987 37852256
    575107 8sfe:B (3.36) BS01 ADP ? GO:0002199 ... P78371 37852256
    575108 8sfe:D (3.36) BS01 ADP ? GO:0002199 ... P50991 37852256
    575109 8sfe:E (3.36) BS01 ADP ? GO:0003730 ... P48643 37852256
    575110 8sfe:G (3.36) BS01 ADP ? GO:0002199 ... P49368 37852256
    575111 8sfe:H (3.36) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575112 8sfe:Q (3.36) BS01 ADP ? GO:0002199 ... P50990 37852256
    575113 8sfe:Z (3.36) BS01 ADP ? GO:0003723 ... P40227 37852256
    575114 8sfe:a (3.36) BS01 ADP ? GO:0000242 ... P17987 37852256
    575115 8sfe:b (3.36) BS01 ADP ? GO:0002199 ... P78371 37852256
    575116 8sfe:d (3.36) BS01 ADP ? GO:0002199 ... P50991 37852256
    575117 8sfe:e (3.36) BS01 ADP ? GO:0003730 ... P48643 37852256
    575118 8sfe:g (3.36) BS01 ADP ? GO:0002199 ... P49368 37852256
    575119 8sfe:h (3.36) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575120 8sfe:q (3.36) BS01 ADP ? GO:0002199 ... P50990 37852256
    575121 8sfe:z (3.36) BS01 ADP ? GO:0003723 ... P40227 37852256
    575122 8sff:A (3.2) BS01 ADP ? GO:0000242 ... P17987 37852256
    575123 8sff:A (3.2) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575124 8sff:B (3.2) BS01 ADP ? GO:0002199 ... P78371 37852256
    575125 8sff:B (3.2) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575126 8sff:D (3.2) BS01 ADP ? GO:0002199 ... P50991 37852256
    575127 8sff:D (3.2) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575128 8sff:E (3.2) BS01 ADP ? GO:0003730 ... P48643 37852256
    575129 8sff:E (3.2) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575130 8sff:G (3.2) BS01 ADP ? GO:0002199 ... P49368 37852256
    575131 8sff:G (3.2) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575132 8sff:H (3.2) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575133 8sff:H (3.2) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575134 8sff:Q (3.2) BS01 ADP ? GO:0002199 ... P50990 37852256
    575135 8sff:Q (3.2) BS02 MG ? GO:0002199 ... P50990 37852256
    575136 8sff:Q (3.2) BS03 AF3 ? GO:0002199 ... P50990 37852256
    575137 8sff:Z (3.2) BS01 ADP ? GO:0003723 ... P40227 37852256
    575138 8sff:Z (3.2) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575139 8sff:a (3.2) BS01 ADP ? GO:0000242 ... P17987 37852256
    575140 8sff:a (3.2) BS02 AF3 ? GO:0000242 ... P17987 37852256
    575141 8sff:b (3.2) BS01 ADP ? GO:0002199 ... P78371 37852256
    575142 8sff:b (3.2) BS02 AF3 ? GO:0002199 ... P78371 37852256
    575143 8sff:d (3.2) BS01 ADP ? GO:0002199 ... P50991 37852256
    575144 8sff:d (3.2) BS02 AF3 ? GO:0002199 ... P50991 37852256
    575145 8sff:e (3.2) BS01 ADP ? GO:0003730 ... P48643 37852256
    575146 8sff:e (3.2) BS02 AF3 ? GO:0003730 ... P48643 37852256
    575147 8sff:g (3.2) BS01 ADP ? GO:0002199 ... P49368 37852256
    575148 8sff:g (3.2) BS02 AF3 ? GO:0002199 ... P49368 37852256
    575149 8sff:h (3.2) BS01 ADP ? GO:0005515 ... Q99832 37852256
    575150 8sff:h (3.2) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    575151 8sff:q (3.2) BS01 ADP ? GO:0002199 ... P50990 37852256
    575152 8sff:q (3.2) BS02 AF3 ? GO:0002199 ... P50990 37852256
    575153 8sff:z (3.2) BS01 ADP ? GO:0003723 ... P40227 37852256
    575154 8sff:z (3.2) BS02 AF3 ? GO:0003723 ... P40227 37852256
    575155 8sft:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    575156 8sft:A (2.75) BS02 KMP ? GO:0000166 ... T1KUK4 N/A
    575157 8sft:B (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    575158 8sft:B (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    575159 8sft:C (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    575160 8sft:C (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    575161 8sft:D (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    575162 8sfu:A (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    575163 8sfu:A (1.8) BS02 ZWN ? GO:0000166 ... T1KUK4 N/A
    575164 8sfu:B (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    575165 8sfu:B (1.8) BS02 ZWN ? GO:0000166 ... T1KUK4 N/A
    575166 8sfw:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    575167 8sfw:A (2.75) BS02 QUE ? GO:0000166 ... T1KUK4 N/A
    575168 8sfy:A (2.35) BS01 UPG ? GO:0000166 ... T1KUK4 N/A
    575169 8sg1:R (2.94) BS01 peptide ? GO:0004930 ... Q99788 38055679
    575170 8sg1:R (2.94) BS02 CLR ? GO:0004930 ... Q99788 38055679
    575171 8sg2:A (-1.00) BS01 peptide 5.2.1.8 GO:0000413 ... Q13526 38687676
    575172 8sg5:A (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    575173 8sg5:A (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575174 8sg5:A (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575175 8sg5:A (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575176 8sg5:B (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    575177 8sg5:B (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575178 8sg5:B (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575179 8sg5:B (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575180 8sg5:C (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    575181 8sg5:C (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575182 8sg5:C (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575183 8sg5:C (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575184 8sg5:D (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    575185 8sg5:D (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575186 8sg5:D (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575187 8sg5:D (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575188 8sg5:E (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    575189 8sg5:E (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575190 8sg5:E (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575191 8sg5:E (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575192 8sg5:F (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    575193 8sg5:F (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575194 8sg5:F (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575195 8sg5:F (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575196 8sg5:G (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    575197 8sg5:G (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575198 8sg5:G (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575199 8sg5:G (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    575200 8sg5:H (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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