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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    574801 8sf7:EL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574802 8sf7:EM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574803 8sf7:EN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574804 8sf7:FA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574805 8sf7:FB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574806 8sf7:FC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574807 8sf7:FD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574808 8sf7:FE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574809 8sf7:FF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574810 8sf7:FG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574811 8sf7:FH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574812 8sf7:FI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574813 8sf7:FJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574814 8sf7:FK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574815 8sf7:FL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574816 8sf7:FM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574817 8sf7:FN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574818 8sf7:GA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574819 8sf7:GB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574820 8sf7:GC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574821 8sf7:GD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574822 8sf7:GD (4.1) BS02 MG ? GO:0000226 ... P41352 38598282
    574823 8sf7:GD (4.1) BS03 GDP ? GO:0000226 ... P41352 38598282
    574824 8sf7:GE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574825 8sf7:GF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574826 8sf7:GG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574827 8sf7:GH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574828 8sf7:GI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574829 8sf7:GJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574830 8sf7:GK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574831 8sf7:GL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574832 8sf7:GL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574833 8sf7:GM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574834 8sf7:GN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574835 8sf7:HA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574836 8sf7:HB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574837 8sf7:HC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574838 8sf7:HD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574839 8sf7:HD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574840 8sf7:HE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574841 8sf7:HF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574842 8sf7:HG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574843 8sf7:HH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574844 8sf7:HI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574845 8sf7:HJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574846 8sf7:HK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574847 8sf7:HL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574848 8sf7:HM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574849 8sf7:HN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574850 8sf7:IA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574851 8sf7:IB (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574852 8sf7:IB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574853 8sf7:IC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574854 8sf7:ID (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574855 8sf7:ID (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574856 8sf7:IE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574857 8sf7:IF (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574858 8sf7:IF (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574859 8sf7:IG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574860 8sf7:IH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574861 8sf7:II (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574862 8sf7:IJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574863 8sf7:IK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574864 8sf7:IL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574865 8sf7:IM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574866 8sf7:IN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574867 8sf7:JA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574868 8sf7:JA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574869 8sf7:JB (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574870 8sf7:JB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574871 8sf7:JC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574872 8sf7:JC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574873 8sf7:JD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574874 8sf7:JD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574875 8sf7:JE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574876 8sf7:JE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574877 8sf7:JF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574878 8sf7:JG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574879 8sf7:JG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574880 8sf7:JH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574881 8sf7:JI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574882 8sf7:JI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574883 8sf7:JJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574884 8sf7:JK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574885 8sf7:JL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574886 8sf7:JL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574887 8sf7:JM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574888 8sf7:JM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574889 8sf7:JN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574890 8sf7:KA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574891 8sf7:KB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574892 8sf7:KC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574893 8sf7:KD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574894 8sf7:KE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574895 8sf7:KF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574896 8sf7:KG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574897 8sf7:KH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574898 8sf7:KI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574899 8sf7:KJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574900 8sf7:KK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574901 8sf7:KL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574902 8sf7:KL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574903 8sf7:KM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574904 8sf7:KN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574905 8sf7:LA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574906 8sf7:LB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574907 8sf7:LC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574908 8sf7:LC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574909 8sf7:LD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574910 8sf7:LE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574911 8sf7:LF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574912 8sf7:LG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574913 8sf7:LG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574914 8sf7:LH (4.1) BS01 MG ? GO:0000226 ... P41352 38598282
    574915 8sf7:LH (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574916 8sf7:LI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574917 8sf7:LJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574918 8sf7:LK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574919 8sf7:LK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574920 8sf7:LL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574921 8sf7:LM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574922 8sf7:LN (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574923 8sf7:LN (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574924 8sf7:MA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574925 8sf7:MB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574926 8sf7:MC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574927 8sf7:MD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574928 8sf7:MD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574929 8sf7:ME (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574930 8sf7:MF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574931 8sf7:MG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574932 8sf7:MH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574933 8sf7:MI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574934 8sf7:MJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574935 8sf7:MK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574936 8sf7:ML (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574937 8sf7:MM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574938 8sf7:MN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574939 8sf7:NA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574940 8sf7:NB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574941 8sf7:NC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574942 8sf7:NC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574943 8sf7:ND (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574944 8sf7:ND (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574945 8sf7:NE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574946 8sf7:NF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574947 8sf7:NG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574948 8sf7:NG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574949 8sf7:NH (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574950 8sf7:NH (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574951 8sf7:NI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574952 8sf7:NJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574953 8sf7:NK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574954 8sf7:NK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574955 8sf7:NL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574956 8sf7:NL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574957 8sf7:NM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574958 8sf7:NN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574959 8sf7:OA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574960 8sf7:OA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574961 8sf7:OB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574962 8sf7:OC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574963 8sf7:OD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574964 8sf7:OE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574965 8sf7:OF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574966 8sf7:OG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574967 8sf7:OH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574968 8sf7:OI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574969 8sf7:OI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574970 8sf7:OJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574971 8sf7:OK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574972 8sf7:OL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574973 8sf7:OL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574974 8sf7:OM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574975 8sf7:ON (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574976 8sf7:PA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574977 8sf7:PA (4.1) BS02 GDP 3.6.5.- GO:0000226 ... P41351 38598282
    574978 8sf7:PB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574979 8sf7:PC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574980 8sf7:PD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574981 8sf7:PE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574982 8sf7:PF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574983 8sf7:PG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574984 8sf7:PH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574985 8sf7:PI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574986 8sf7:PJ (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574987 8sf7:PJ (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574988 8sf7:PK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574989 8sf7:PL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574990 8sf7:PM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574991 8sf7:PN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574992 8sf7:QA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574993 8sf7:QB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574994 8sf7:QB (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    574995 8sf7:QC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574996 8sf7:QC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574997 8sf7:QD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574998 8sf7:QE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574999 8sf7:QF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    575000 8sf7:QF (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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