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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    574601 8scz:A (3.4) BS01 rna 3.6.4.13 GO:0002230 ... O95786 N/A
    574602 8scz:A (3.4) BS02 ZN 3.6.4.13 GO:0002230 ... O95786 N/A
    574603 8sd0:A (3.8) BS01 rna 3.6.4.13 GO:0002230 ... O95786 N/A
    574604 8sd0:A (3.8) BS02 ZN 3.6.4.13 GO:0002230 ... O95786 N/A
    574605 8sd1:A (1.298) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    574606 8sd6:A (1.397) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    574607 8sd7:A (1.704) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    574608 8sd8:A (1.789) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    574609 8sd9:A (1.904) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    574610 8sdr:A (1.35) BS01 CB4 3.5.2.6 GO:0008800 ... P24735 37850746
    574611 8sds:A (1.63) BS01 CB4 3.5.2.6 GO:0008800 ... P24735 37850746
    574612 8sdt:A (1.38) BS01 ZXM 3.5.2.6 GO:0008800 ... P24735 37850746
    574613 8sdv:A (1.42) BS01 ZXM 3.5.2.6 GO:0008800 ... P24735 37850746
    574614 8sdw:A (1.75) BS01 G3D 3.6.5.2 GO:0000139 ... P84077 38574162
    574615 8sdz:A (2.86) BS01 RTO ? GO:0005452 ... O35956 37845412
    574616 8se9:A (3.2) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    574617 8sea:A (3.4) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    574618 8seb:A (3.24) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    574619 8sen:A (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    574620 8sen:B (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    574621 8sen:C (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    574622 8sen:D (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    574623 8seo:A (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    574624 8seo:A (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    574625 8seo:B (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    574626 8seo:B (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    574627 8seo:C (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    574628 8seo:C (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    574629 8seo:D (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    574630 8seo:D (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    574631 8sep:A (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    574632 8sep:A (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    574633 8sep:B (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    574634 8sep:B (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    574635 8sep:C (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    574636 8sep:C (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    574637 8sep:D (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    574638 8sep:D (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    574639 8seq:A (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    574640 8seq:A (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    574641 8seq:B (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    574642 8seq:B (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    574643 8seq:C (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    574644 8seq:C (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    574645 8seq:D (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    574646 8seq:D (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    574647 8ser:A (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    574648 8ser:A (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    574649 8ser:B (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    574650 8ser:B (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    574651 8ser:C (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    574652 8ser:C (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    574653 8ser:D (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    574654 8ser:D (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    574655 8ses:A (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    574656 8ses:A (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    574657 8ses:B (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    574658 8ses:B (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    574659 8ses:C (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    574660 8ses:C (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    574661 8ses:D (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    574662 8ses:D (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    574663 8set:A (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    574664 8set:A (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    574665 8set:B (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    574666 8set:B (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    574667 8set:C (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    574668 8set:C (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    574669 8set:D (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    574670 8set:D (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    574671 8seu:A (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    574672 8seu:B (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    574673 8seu:C (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    574674 8seu:D (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    574675 8sev:A (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    574676 8sev:A (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    574677 8sev:B (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    574678 8sev:B (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    574679 8sev:C (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    574680 8sev:C (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    574681 8sev:D (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    574682 8sev:D (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    574683 8sew:A (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    574684 8sew:A (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    574685 8sew:B (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    574686 8sew:B (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    574687 8sew:C (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    574688 8sew:C (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    574689 8sew:D (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    574690 8sew:D (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    574691 8sex:A (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    574692 8sex:A (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    574693 8sex:B (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    574694 8sex:B (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    574695 8sex:C (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    574696 8sex:C (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    574697 8sex:D (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    574698 8sex:D (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    574699 8sey:A (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    574700 8sey:A (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    574701 8sey:B (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    574702 8sey:B (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    574703 8sey:C (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    574704 8sey:C (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    574705 8sey:D (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    574706 8sey:D (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    574707 8sez:A (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    574708 8sez:A (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    574709 8sez:B (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    574710 8sez:B (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    574711 8sez:C (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    574712 8sez:C (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    574713 8sez:D (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    574714 8sez:D (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    574715 8sf0:A (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    574716 8sf0:A (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    574717 8sf0:B (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    574718 8sf0:B (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    574719 8sf0:C (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    574720 8sf0:C (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    574721 8sf0:D (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    574722 8sf0:D (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    574723 8sf1:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    574724 8sf7:AA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574725 8sf7:AB (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574726 8sf7:AB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574727 8sf7:AC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574728 8sf7:AD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574729 8sf7:AE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574730 8sf7:AF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574731 8sf7:AG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574732 8sf7:AH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574733 8sf7:AI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574734 8sf7:AJ (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574735 8sf7:AJ (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574736 8sf7:AK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574737 8sf7:AL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574738 8sf7:AM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574739 8sf7:AN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574740 8sf7:BA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574741 8sf7:BB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574742 8sf7:BC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574743 8sf7:BD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574744 8sf7:BE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574745 8sf7:BF (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    574746 8sf7:BF (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    574747 8sf7:BG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574748 8sf7:BH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574749 8sf7:BI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574750 8sf7:BJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574751 8sf7:BK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574752 8sf7:BL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574753 8sf7:BM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574754 8sf7:BN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574755 8sf7:CA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574756 8sf7:CB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574757 8sf7:CC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574758 8sf7:CD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574759 8sf7:CE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574760 8sf7:CF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574761 8sf7:CG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574762 8sf7:CH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574763 8sf7:CH (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    574764 8sf7:CI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574765 8sf7:CJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574766 8sf7:CK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574767 8sf7:CL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574768 8sf7:CL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    574769 8sf7:CM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574770 8sf7:CN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574771 8sf7:DA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574772 8sf7:DB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574773 8sf7:DB (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    574774 8sf7:DC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574775 8sf7:DD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574776 8sf7:DD (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    574777 8sf7:DE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574778 8sf7:DF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574779 8sf7:DG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574780 8sf7:DH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574781 8sf7:DI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574782 8sf7:DJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574783 8sf7:DK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574784 8sf7:DL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574785 8sf7:DM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574786 8sf7:DN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574787 8sf7:EA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574788 8sf7:EB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574789 8sf7:EC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574790 8sf7:ED (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574791 8sf7:ED (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    574792 8sf7:EE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574793 8sf7:EF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574794 8sf7:EF (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    574795 8sf7:EG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574796 8sf7:EH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574797 8sf7:EI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    574798 8sf7:EJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    574799 8sf7:EK (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 38598282
    574800 8sf7:EK (4.1) BS02 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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