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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    574201 8s1u:Z (3.4) BS02 rna ? GO:0005840 ... P19947 38811035
    574202 8s32:A (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574203 8s32:B (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574204 8s32:C (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574205 8s32:D (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574206 8s32:E (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574207 8s32:F (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574208 8s32:G (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574209 8s32:H (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574210 8s32:I (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574211 8s32:J (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574212 8s32:K (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574213 8s32:L (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574214 8s32:M (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574215 8s32:N (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    574216 8s3e:A (2.39) BS01 CLR ? GO:0005216 ... Q9BG98 38553946
    574217 8s3e:A (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    574218 8s3e:A (2.39) BS03 CA ? GO:0005216 ... Q9BG98 38553946
    574219 8s3e:A (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    574220 8s3e:A (2.39) BS05 MG ? GO:0005216 ... Q9BG98 38553946
    574221 8s3e:B (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    574222 8s3e:B (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    574223 8s3e:B (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    574224 8s3e:B (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    574225 8s3e:B (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    574226 8s3e:C (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    574227 8s3e:C (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    574228 8s3e:C (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    574229 8s3e:C (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    574230 8s3e:C (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    574231 8s3e:D (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    574232 8s3e:D (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    574233 8s3e:D (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    574234 8s3e:D (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    574235 8s3e:D (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    574236 8s3r:A (2.28) BS01 A1H48 N/A GO:0001779 ... O00329 38907711
    574237 8s51:A (3.1) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574238 8s51:A (3.1) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574239 8s51:A (3.1) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574240 8s51:A (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574241 8s51:A (3.1) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574242 8s51:A (3.1) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574243 8s51:B (3.1) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574244 8s51:B (3.1) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574245 8s51:B (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574246 8s51:C (3.1) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    574247 8s51:E (3.1) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    574248 8s51:I (3.1) BS01 ZN ? GO:0000428 ... P60899 38604172
    574249 8s51:I (3.1) BS02 ZN ? GO:0000428 ... P60899 38604172
    574250 8s51:J (3.1) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 38604172
    574251 8s51:L (3.1) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38604172
    574252 8s51:M (3.1) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    574253 8s51:M (3.1) BS02 rna 2.3.1.48 GO:0000776 ... Q00403 38604172
    574254 8s51:M (3.1) BS03 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    574255 8s51:M (3.1) BS04 ZN 2.3.1.48 GO:0000776 ... Q00403 38604172
    574256 8s51:O (3.1) BS01 dna ? GO:0000785 ... P20226 38604172
    574257 8s51:O (3.1) BS02 dna ? GO:0000785 ... P20226 38604172
    574258 8s51:R (3.1) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    574259 8s51:R (3.1) BS02 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    574260 8s51:U (3.1) BS01 dna ? GO:0000979 ... P52655 38604172
    574261 8s51:U (3.1) BS02 dna ? GO:0000979 ... P52655 38604172
    574262 8s51:W (3.1) BS01 ZN ? GO:0001113 ... P29083 38604172
    574263 8s52:A (2.9) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574264 8s52:A (2.9) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574265 8s52:A (2.9) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574266 8s52:A (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574267 8s52:A (2.9) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574268 8s52:A (2.9) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574269 8s52:B (2.9) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574270 8s52:B (2.9) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574271 8s52:B (2.9) BS03 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574272 8s52:B (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574273 8s52:C (2.9) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    574274 8s52:E (2.9) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    574275 8s52:I (2.9) BS01 ZN ? GO:0000428 ... P60899 38604172
    574276 8s52:I (2.9) BS02 ZN ? GO:0000428 ... P60899 38604172
    574277 8s52:J (2.9) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38604172
    574278 8s52:L (2.9) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38604172
    574279 8s52:M (2.9) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    574280 8s52:M (2.9) BS02 rna 2.3.1.48 GO:0000776 ... Q00403 38604172
    574281 8s52:M (2.9) BS03 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    574282 8s52:M (2.9) BS04 ZN 2.3.1.48 GO:0000776 ... Q00403 38604172
    574283 8s52:O (2.9) BS01 dna ? GO:0000785 ... P20226 38604172
    574284 8s52:O (2.9) BS02 dna ? GO:0000785 ... P20226 38604172
    574285 8s52:R (2.9) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    574286 8s52:W (2.9) BS01 ZN ? GO:0001113 ... P29083 38604172
    574287 8s54:A (3.4) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574288 8s54:A (3.4) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574289 8s54:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574290 8s54:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574291 8s54:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574292 8s54:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574293 8s54:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574294 8s54:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574295 8s54:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574296 8s54:C (3.4) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    574297 8s54:E (3.4) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    574298 8s54:I (3.4) BS01 ZN ? GO:0000428 ... P60899 38604172
    574299 8s54:I (3.4) BS02 ZN ? GO:0000428 ... P60899 38604172
    574300 8s54:J (3.4) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 38604172
    574301 8s54:W (3.4) BS01 ZN ? GO:0001113 ... P29083 38604172
    574302 8s55:A (3.4) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574303 8s55:A (3.4) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574304 8s55:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574305 8s55:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574306 8s55:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574307 8s55:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574308 8s55:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574309 8s55:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574310 8s55:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574311 8s55:C (3.4) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    574312 8s55:I (3.4) BS01 ZN ? GO:0000428 ... P60899 38604172
    574313 8s55:I (3.4) BS02 ZN ? GO:0000428 ... P60899 38604172
    574314 8s55:J (3.4) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38604172
    574315 8s55:W (3.4) BS01 ZN ? GO:0001113 ... P29083 38604172
    574316 8s5b:A (1.8) BS01 A1H5E ? GO:0015768 ... A9CEY9 38567495
    574317 8s5h:A (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574318 8s5h:B (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574319 8s5h:C (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574320 8s5h:D (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574321 8s5h:E (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574322 8s5h:F (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574323 8s5h:G (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574324 8s5h:H (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574325 8s5i:A (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574326 8s5i:B (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574327 8s5i:C (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574328 8s5i:D (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574329 8s5i:E (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574330 8s5i:F (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574331 8s5j:A (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574332 8s5j:B (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574333 8s5j:C (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574334 8s5j:D (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574335 8s5j:E (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574336 8s5j:F (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574337 8s5j:G (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574338 8s5j:H (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574339 8s5j:I (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574340 8s5j:J (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574341 8s5k:A (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574342 8s5k:B (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574343 8s5k:C (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574344 8s5k:D (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574345 8s5k:E (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574346 8s5k:F (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574347 8s5k:G (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574348 8s5k:H (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574349 8s5l:A (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574350 8s5l:B (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574351 8s5l:B (3.8) BS02 PLP 4.2.1.22 GO:0001958 ... P35520 38575566
    574352 8s5l:C (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574353 8s5l:C (3.8) BS02 PLP 4.2.1.22 GO:0001958 ... P35520 38575566
    574354 8s5l:D (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    574355 8s5m:A (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574356 8s5m:B (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574357 8s5m:C (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574358 8s5m:D (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574359 8s5m:E (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574360 8s5m:E (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574361 8s5m:F (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574362 8s5m:G (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574363 8s5m:G (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574364 8s5m:H (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574365 8s5m:I (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574366 8s5m:J (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574367 8s5m:J (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    574368 8s5n:A (3.4) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574369 8s5n:A (3.4) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574370 8s5n:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574371 8s5n:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574372 8s5n:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574373 8s5n:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    574374 8s5n:B (3.4) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574375 8s5n:B (3.4) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574376 8s5n:B (3.4) BS03 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574377 8s5n:B (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    574378 8s5n:C (3.4) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    574379 8s5n:E (3.4) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    574380 8s5n:I (3.4) BS01 ZN ? GO:0000428 ... P60899 38604172
    574381 8s5n:J (3.4) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38604172
    574382 8s5n:L (3.4) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38604172
    574383 8s5n:M (3.4) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    574384 8s5n:M (3.4) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    574385 8s5n:M (3.4) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38604172
    574386 8s5n:O (3.4) BS01 dna ? GO:0000785 ... P20226 38604172
    574387 8s5n:O (3.4) BS02 dna ? GO:0000785 ... P20226 38604172
    574388 8s5n:R (3.4) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    574389 8s5n:R (3.4) BS02 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    574390 8s5n:U (3.4) BS01 dna ? GO:0000979 ... P52655 38604172
    574391 8s5n:W (3.4) BS01 ZN ? GO:0001113 ... P29083 38604172
    574392 8s8a:A (1.5) BS01 UK9 3.1.3.16
    3.1.3.74    		 GO:0000287 ... Q96GD0 38856179
    574393 8s8a:A (1.5) BS02 MG 3.1.3.16
    3.1.3.74    		 GO:0000287 ... Q96GD0 38856179
    574394 8s91:A (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574395 8s91:A (4.3) BS02 MG 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574396 8s91:B (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574397 8s91:B (4.3) BS02 MG 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574398 8s91:C (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574399 8s91:C (4.3) BS02 MG 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574400 8s91:D (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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