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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    574001 8rxx:LK (2.97) BS02 rna ? GO:0003723 ... Q4QBJ1 38722744
    574002 8rxx:LK (2.97) BS03 rna ? GO:0003723 ... Q4QBJ1 38722744
    574003 8rxx:LL (2.97) BS01 rna ? GO:0003735 ... E9AFK0 38722744
    574004 8rxx:LL (2.97) BS02 rna ? GO:0003735 ... E9AFK0 38722744
    574005 8rxx:LM (2.97) BS01 rna ? GO:0002181 ... Q4Q6S3 38722744
    574006 8rxx:LM (2.97) BS02 rna ? GO:0002181 ... Q4Q6S3 38722744
    574007 8rxx:LM (2.97) BS03 rna ? GO:0002181 ... Q4Q6S3 38722744
    574008 8rxx:LN (2.97) BS01 rna ? GO:0000027 ... O97213 38722744
    574009 8rxx:LN (2.97) BS02 rna ? GO:0000027 ... O97213 38722744
    574010 8rxx:LN (2.97) BS03 rna ? GO:0000027 ... O97213 38722744
    574011 8rxx:LO (2.97) BS01 rna ? GO:0000027 ... E9AF09 38722744
    574012 8rxx:LO (2.97) BS02 rna ? GO:0000027 ... E9AF09 38722744
    574013 8rxx:LO (2.97) BS03 rna ? GO:0000027 ... E9AF09 38722744
    574014 8rxx:LP (2.97) BS01 rna ? GO:0003723 ... Q4QG98 38722744
    574015 8rxx:LP (2.97) BS02 rna ? GO:0003723 ... Q4QG98 38722744
    574016 8rxx:LQ (2.97) BS01 rna ? GO:0003723 ... Q4QJ37 38722744
    574017 8rxx:LQ (2.97) BS02 rna ? GO:0003723 ... Q4QJ37 38722744
    574018 8rxx:LQ (2.97) BS03 rna ? GO:0003723 ... Q4QJ37 38722744
    574019 8rxx:LQ (2.97) BS04 rna ? GO:0003723 ... Q4QJ37 38722744
    574020 8rxx:LQ (2.97) BS05 rna ? GO:0003723 ... Q4QJ37 38722744
    574021 8rxx:LR (2.97) BS01 rna ? GO:0003735 ... Q4Q5J4 38722744
    574022 8rxx:LR (2.97) BS02 rna ? GO:0003735 ... Q4Q5J4 38722744
    574023 8rxx:LR (2.97) BS03 rna ? GO:0003735 ... Q4Q5J4 38722744
    574024 8rxx:LS (2.97) BS01 rna ? GO:0003735 ... Q4QEX4 38722744
    574025 8rxx:LS (2.97) BS02 rna ? GO:0003735 ... Q4QEX4 38722744
    574026 8rxx:LS (2.97) BS03 rna ? GO:0003735 ... Q4QEX4 38722744
    574027 8rxx:LT (2.97) BS01 rna ? GO:0002181 ... Q4QAX6 38722744
    574028 8rxx:LT (2.97) BS02 rna ? GO:0002181 ... Q4QAX6 38722744
    574029 8rxx:LT (2.97) BS03 rna ? GO:0002181 ... Q4QAX6 38722744
    574030 8rxx:LT (2.97) BS04 rna ? GO:0002181 ... Q4QAX6 38722744
    574031 8rxx:LT (2.97) BS05 rna ? GO:0002181 ... Q4QAX6 38722744
    574032 8rxx:LU (2.97) BS01 rna ? GO:0002181 ... Q4Q0X2 38722744
    574033 8rxx:LU (2.97) BS02 rna ? GO:0002181 ... Q4Q0X2 38722744
    574034 8rxx:LU (2.97) BS03 rna ? GO:0002181 ... Q4Q0X2 38722744
    574035 8rxx:LV (2.97) BS01 rna ? GO:0000027 ... Q4QJ20 38722744
    574036 8rxx:LV (2.97) BS02 rna ? GO:0000027 ... Q4QJ20 38722744
    574037 8rxx:LV (2.97) BS03 rna ? GO:0000027 ... Q4QJ20 38722744
    574038 8rxx:LW (2.97) BS01 rna ? GO:0002181 ... Q4QAC5 38722744
    574039 8rxx:LW (2.97) BS02 rna ? GO:0002181 ... Q4QAC5 38722744
    574040 8rxx:LX (2.97) BS01 rna ? GO:0002181 ... Q4Q1W6 38722744
    574041 8rxx:LX (2.97) BS02 rna ? GO:0002181 ... Q4Q1W6 38722744
    574042 8rxx:LY (2.97) BS01 rna ? GO:0003735 ... Q4Q504 38722744
    574043 8rxx:LY (2.97) BS02 rna ? GO:0003735 ... Q4Q504 38722744
    574044 8rxx:LZ (2.97) BS01 rna ? GO:0003735 ... Q4QGW7 38722744
    574045 8rxx:La (2.97) BS01 rna ? GO:0000463 ... Q4Q8V7 38722744
    574046 8rxx:La (2.97) BS02 rna ? GO:0000463 ... Q4Q8V7 38722744
    574047 8rxx:Lb (2.97) BS01 rna ? GO:0002181 ... Q4Q178 38722744
    574048 8rxx:Lb (2.97) BS02 rna ? GO:0002181 ... Q4Q178 38722744
    574049 8rxx:Lc (2.97) BS01 rna ? GO:0000463 ... Q4Q9H4 38722744
    574050 8rxx:Lc (2.97) BS02 rna ? GO:0000463 ... Q4Q9H4 38722744
    574051 8rxx:Ld (2.97) BS01 rna ? GO:0003723 ... E9AEK1 38722744
    574052 8rxx:Le (2.97) BS01 rna ? GO:0002181 ... E9AFF2 38722744
    574053 8rxx:Le (2.97) BS02 rna ? GO:0002181 ... E9AFF2 38722744
    574054 8rxx:Le (2.97) BS03 rna ? GO:0002181 ... E9AFF2 38722744
    574055 8rxx:Le (2.97) BS04 rna ? GO:0002181 ... E9AFF2 38722744
    574056 8rxx:Lf (2.97) BS01 rna ? GO:0003735 ... Q4QC11 38722744
    574057 8rxx:Lg (2.97) BS01 rna ? GO:0002181 ... Q4QHL3 38722744
    574058 8rxx:Lg (2.97) BS02 rna ? GO:0002181 ... Q4QHL3 38722744
    574059 8rxx:Lg (2.97) BS03 rna ? GO:0002181 ... Q4QHL3 38722744
    574060 8rxx:Lh (2.97) BS01 rna ? GO:0003735 ... Q4QDP9 38722744
    574061 8rxx:Lh (2.97) BS02 rna ? GO:0003735 ... Q4QDP9 38722744
    574062 8rxx:Lh (2.97) BS03 rna ? GO:0003735 ... Q4QDP9 38722744
    574063 8rxx:Li (2.97) BS01 rna ? GO:0002181 ... Q4QCE1 38722744
    574064 8rxx:Li (2.97) BS02 rna ? GO:0002181 ... Q4QCE1 38722744
    574065 8rxx:Lj (2.97) BS01 rna ? GO:0003723 ... E9AEH2 38722744
    574066 8rxx:Lj (2.97) BS02 rna ? GO:0003723 ... E9AEH2 38722744
    574067 8rxx:Lj (2.97) BS03 rna ? GO:0003723 ... E9AEH2 38722744
    574068 8rxx:Lk (2.97) BS01 rna ? GO:0003735 ... Q4Q8X0 38722744
    574069 8rxx:Lk (2.97) BS02 rna ? GO:0003735 ... Q4Q8X0 38722744
    574070 8rxx:Lk (2.97) BS03 rna ? GO:0003735 ... Q4Q8X0 38722744
    574071 8rxx:Ll (2.97) BS01 rna ? GO:0003735 ... Q4QEQ0 38722744
    574072 8rxx:Ll (2.97) BS02 rna ? GO:0003735 ... Q4QEQ0 38722744
    574073 8rxx:Ll (2.97) BS03 rna ? GO:0003735 ... Q4QEQ0 38722744
    574074 8rxx:Lm (2.97) BS01 rna ? GO:0003735 ... P69201 38722744
    574075 8rxx:Lm (2.97) BS02 rna ? GO:0003735 ... P69201 38722744
    574076 8rxx:Lm (2.97) BS03 rna ? GO:0003735 ... P69201 38722744
    574077 8rxx:Lm (2.97) BS04 ZN ? GO:0003735 ... P69201 38722744
    574078 8rxx:Ln (2.97) BS01 rna N/A GO:0003735 ... N/A 38722744
    574079 8rxx:Ln (2.97) BS02 rna N/A GO:0003735 ... N/A 38722744
    574080 8rxx:Lo (2.97) BS01 rna ? GO:0003735 ... Q4QC01 38722744
    574081 8rxx:Lo (2.97) BS02 rna ? GO:0003735 ... Q4QC01 38722744
    574082 8rxx:Lo (2.97) BS03 rna ? GO:0003735 ... Q4QC01 38722744
    574083 8rxx:Lp (2.97) BS01 rna ? GO:0003735 ... Q4Q3L3 38722744
    574084 8rxx:Lp (2.97) BS02 rna ? GO:0003735 ... Q4Q3L3 38722744
    574085 8rxx:Lp (2.97) BS03 rna ? GO:0003735 ... Q4Q3L3 38722744
    574086 8rxx:SA (2.97) BS01 rna ? GO:0003735 ... Q4FX73 38722744
    574087 8rxx:SB (2.97) BS01 rna ? GO:0000028 ... Q4Q0Q0 38722744
    574088 8rxx:SC (2.97) BS01 rna ? GO:0003723 ... Q4Q4A0 38722744
    574089 8rxx:SD (2.97) BS01 rna ? GO:0003723 ... Q4QIM3 38722744
    574090 8rxx:SE (2.97) BS01 rna ? GO:0003723 ... Q4QG31 38722744
    574091 8rxx:SF (2.97) BS01 rna ? GO:0003723 ... Q4QDL5 38722744
    574092 8rxx:SG (2.97) BS01 rna ? GO:0003735 ... Q9NE83 38722744
    574093 8rxx:SH (2.97) BS01 rna ? GO:0000028 ... Q868B1 38722744
    574094 8rxx:SI (2.97) BS01 rna ? GO:0003735 ... E9AC32 38722744
    574095 8rxx:SJ (2.97) BS01 rna ? GO:0003735 ... Q4QGW3 38722744
    574096 8rxx:SK (2.97) BS01 rna ? GO:0000462 ... P25204 38722744
    574097 8rxx:SK (2.97) BS02 rna ? GO:0000462 ... P25204 38722744
    574098 8rxx:SK (2.97) BS03 rna ? GO:0000462 ... P25204 38722744
    574099 8rxx:SK (2.97) BS04 MG ? GO:0000462 ... P25204 38722744
    574100 8rxx:SL (2.97) BS01 rna ? GO:0000462 ... Q4Q9A5 38722744
    574101 8rxx:SM (2.97) BS01 rna ? GO:0003735 ... Q4Q8G4 38722744
    574102 8rxx:SN (2.97) BS01 rna ? GO:0003723 ... Q4Q1X7 38722744
    574103 8rxx:SO (2.97) BS01 rna ? GO:0000028 ... Q4Q8H1 38722744
    574104 8rxx:SP (2.97) BS01 rna ? GO:0003735 ... Q4QC89 38722744
    574105 8rxx:SQ (2.97) BS01 rna ? GO:0003735 ... Q4QG97 38722744
    574106 8rxx:SR (2.97) BS01 rna ? GO:0003676 ... Q4Q1Y3 38722744
    574107 8rxx:SS (2.97) BS01 rna ? GO:0002181 ... Q4Q817 38722744
    574108 8rxx:SS (2.97) BS02 ZN ? GO:0002181 ... Q4Q817 38722744
    574109 8rxx:ST (2.97) BS01 rna ? GO:0003735 ... Q4Q3M1 38722744
    574110 8rxx:ST (2.97) BS02 rna ? GO:0003735 ... Q4Q3M1 38722744
    574111 8rxx:ST (2.97) BS03 rna ? GO:0003735 ... Q4Q3M1 38722744
    574112 8rxx:SU (2.97) BS01 rna N/A GO:0003735 ... N/A 38722744
    574113 8rxx:SV (2.97) BS01 rna ? GO:0003735 ... Q4Q806 38722744
    574114 8rxx:SW (2.97) BS01 rna ? GO:0000028 ... Q4QBV0 38722744
    574115 8rxx:SX (2.97) BS01 rna ? GO:0000028 ... E9AEE8 38722744
    574116 8rxx:SY (2.97) BS01 rna ? GO:0000447 ... Q4QH01 38722744
    574117 8rxx:SZ (2.97) BS01 rna ? GO:0003735 ... Q4Q1D2 38722744
    574118 8rxx:Sa (2.97) BS01 rna ? GO:0003735 ... Q4Q9X4 38722744
    574119 8rxx:Sb (2.97) BS01 rna ? GO:0003729 ... Q4Q8L6 38722744
    574120 8rxx:Sb (2.97) BS02 ZN ? GO:0003729 ... Q4Q8L6 38722744
    574121 8rxx:Sc (2.97) BS01 rna ? GO:0000028 ... Q4Q140 38722744
    574122 8rxx:Sd (2.97) BS01 rna ? GO:0000028 ... Q4Q931 38722744
    574123 8rxx:Se (2.97) BS01 rna ? GO:0003735 ... Q4Q7P0 38722744
    574124 8rxx:Sf (2.97) BS01 rna ? GO:0003735 ... Q4QFK7 38722744
    574125 8rxx:Sh (2.97) BS01 rna ? GO:0003676 ... Q4Q5K7 38722744
    574126 8s1k:A (1.22) BS01 A1H4Y ? GO:0005324 ... P15090 N/A
    574127 8s1p:0 (1.96) BS01 rna ? GO:0003735 ... O34687 38811035
    574128 8s1p:0 (1.96) BS02 ZN ? GO:0003735 ... O34687 38811035
    574129 8s1p:1 (1.96) BS01 rna ? GO:0005737 ... P56849 38811035
    574130 8s1p:1 (1.96) BS02 ZN ? GO:0005737 ... P56849 38811035
    574131 8s1p:2 (1.96) BS01 rna ? GO:0005840 ... P05647 38811035
    574132 8s1p:3 (1.96) BS01 rna ? GO:0003735 ... P55874 38811035
    574133 8s1p:4 (1.96) BS01 rna ? GO:0005737 ... P20278 38811035
    574134 8s1p:4 (1.96) BS02 ZN ? GO:0005737 ... P20278 38811035
    574135 8s1p:6 (1.96) BS01 rna ? GO:0005840 ... Q03223 38811035
    574136 8s1p:6 (1.96) BS02 ZN ? GO:0005840 ... Q03223 38811035
    574137 8s1p:C (1.96) BS01 rna ? GO:0002181 ... P42919 38811035
    574138 8s1p:D (1.96) BS01 rna ? GO:0003735 ... P42920 38811035
    574139 8s1p:E (1.96) BS01 rna ? GO:0003735 ... P42921 38811035
    574140 8s1p:F (1.96) BS01 rna ? GO:0000049 ... P12877 38811035
    574141 8s1p:F (1.96) BS02 rna ? GO:0000049 ... P12877 38811035
    574142 8s1p:F (1.96) BS03 rna ? GO:0000049 ... P12877 38811035
    574143 8s1p:G (1.96) BS01 rna ? GO:0002181 ... P46898 38811035
    574144 8s1p:J (1.96) BS01 rna ? GO:0003729 ... P70974 38811035
    574145 8s1p:K (1.96) BS01 rna ? GO:0003735 ... P12875 38811035
    574146 8s1p:L (1.96) BS01 rna ? GO:0003735 ... P19946 38811035
    574147 8s1p:M (1.96) BS01 rna ? GO:0000049 ... P14577 38811035
    574148 8s1p:M (1.96) BS02 rna ? GO:0000049 ... P14577 38811035
    574149 8s1p:N (1.96) BS01 rna ? GO:0003735 ... P20277 38811035
    574150 8s1p:N (1.96) BS02 MG ? GO:0003735 ... P20277 38811035
    574151 8s1p:O (1.96) BS01 rna ? GO:0005737 ... P46899 38811035
    574152 8s1p:O (1.96) BS02 rna ? GO:0005737 ... P46899 38811035
    574153 8s1p:P (1.96) BS01 rna ? GO:0003735 ... O31742 38811035
    574154 8s1p:Q (1.96) BS01 rna ? GO:0000027 ... P55873 38811035
    574155 8s1p:R (1.96) BS01 rna ? GO:0003735 ... P26908 38811035
    574156 8s1p:S (1.96) BS01 rna ? GO:0003735 ... P42060 38811035
    574157 8s1p:T (1.96) BS01 rna ? GO:0000027 ... P42924 38811035
    574158 8s1p:U (1.96) BS01 rna ? GO:0003677 ... P0CI78 38811035
    574159 8s1p:V (1.96) BS01 rna ? GO:0003723 ... P71020 38811035
    574160 8s1p:W (1.96) BS01 rna ? GO:0003735 ... P05657 38811035
    574161 8s1p:W (1.96) BS02 rna ? GO:0003735 ... P05657 38811035
    574162 8s1p:X (1.96) BS01 rna ? GO:0005840 ... P37807 38811035
    574163 8s1p:Y (1.96) BS01 rna ? GO:0005840 ... P12873 38811035
    574164 8s1p:Z (1.96) BS01 rna ? GO:0005840 ... P19947 38811035
    574165 8s1p:Z (1.96) BS02 rna ? GO:0005840 ... P19947 38811035
    574166 8s1u:0 (3.4) BS01 rna ? GO:0003735 ... O34687 38811035
    574167 8s1u:1 (3.4) BS01 rna ? GO:0005737 ... P56849 38811035
    574168 8s1u:2 (3.4) BS01 rna ? GO:0005840 ... P05647 38811035
    574169 8s1u:3 (3.4) BS01 rna ? GO:0003735 ... P55874 38811035
    574170 8s1u:4 (3.4) BS01 rna ? GO:0005737 ... P20278 38811035
    574171 8s1u:6 (3.4) BS01 rna ? GO:0005840 ... Q03223 38811035
    574172 8s1u:C (3.4) BS01 rna ? GO:0002181 ... P42919 38811035
    574173 8s1u:D (3.4) BS01 rna ? GO:0003735 ... P42920 38811035
    574174 8s1u:E (3.4) BS01 rna ? GO:0003735 ... P42921 38811035
    574175 8s1u:F (3.4) BS01 rna ? GO:0000049 ... P12877 38811035
    574176 8s1u:F (3.4) BS02 rna ? GO:0000049 ... P12877 38811035
    574177 8s1u:F (3.4) BS03 rna ? GO:0000049 ... P12877 38811035
    574178 8s1u:G (3.4) BS01 rna ? GO:0002181 ... P46898 38811035
    574179 8s1u:H (3.4) BS01 rna ? GO:0000049 ... O34693 38811035
    574180 8s1u:J (3.4) BS01 rna ? GO:0003729 ... P70974 38811035
    574181 8s1u:K (3.4) BS01 rna ? GO:0003735 ... P12875 38811035
    574182 8s1u:L (3.4) BS01 rna ? GO:0003735 ... P19946 38811035
    574183 8s1u:M (3.4) BS01 rna ? GO:0000049 ... P14577 38811035
    574184 8s1u:M (3.4) BS02 rna ? GO:0000049 ... P14577 38811035
    574185 8s1u:N (3.4) BS01 rna ? GO:0003735 ... P20277 38811035
    574186 8s1u:O (3.4) BS01 rna ? GO:0005737 ... P46899 38811035
    574187 8s1u:O (3.4) BS02 rna ? GO:0005737 ... P46899 38811035
    574188 8s1u:P (3.4) BS01 rna ? GO:0003735 ... O31742 38811035
    574189 8s1u:Q (3.4) BS01 rna ? GO:0000027 ... P55873 38811035
    574190 8s1u:R (3.4) BS01 rna ? GO:0003735 ... P26908 38811035
    574191 8s1u:S (3.4) BS01 rna ? GO:0003735 ... P42060 38811035
    574192 8s1u:T (3.4) BS01 rna ? GO:0000027 ... P42924 38811035
    574193 8s1u:U (3.4) BS01 rna ? GO:0003677 ... P0CI78 38811035
    574194 8s1u:V (3.4) BS01 rna ? GO:0003723 ... P71020 38811035
    574195 8s1u:V (3.4) BS02 rna ? GO:0003723 ... P71020 38811035
    574196 8s1u:W (3.4) BS01 rna ? GO:0003735 ... P05657 38811035
    574197 8s1u:W (3.4) BS02 rna ? GO:0003735 ... P05657 38811035
    574198 8s1u:X (3.4) BS01 rna ? GO:0005840 ... P37807 38811035
    574199 8s1u:Y (3.4) BS01 rna ? GO:0005840 ... P12873 38811035
    574200 8s1u:Z (3.4) BS01 rna ? GO:0005840 ... P19947 38811035
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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