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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    573801 8rxh:LH (2.93) BS02 rna ? GO:0003729 ... Q4QFG2 38722744
    573802 8rxh:LH (2.93) BS03 rna ? GO:0003729 ... Q4QFG2 38722744
    573803 8rxh:LH (2.93) BS04 rna ? GO:0003729 ... Q4QFG2 38722744
    573804 8rxh:LI (2.93) BS01 rna ? GO:0003723 ... E9AEA8 38722744
    573805 8rxh:LI (2.93) BS02 rna ? GO:0003723 ... E9AEA8 38722744
    573806 8rxh:LI (2.93) BS03 rna ? GO:0003723 ... E9AEA8 38722744
    573807 8rxh:LJ (2.93) BS01 rna ? GO:0003735 ... E9AFK3 38722744
    573808 8rxh:LJ (2.93) BS02 rna ? GO:0003735 ... E9AFK3 38722744
    573809 8rxh:LK (2.93) BS01 rna ? GO:0003723 ... Q4QBJ1 38722744
    573810 8rxh:LK (2.93) BS02 rna ? GO:0003723 ... Q4QBJ1 38722744
    573811 8rxh:LK (2.93) BS03 rna ? GO:0003723 ... Q4QBJ1 38722744
    573812 8rxh:LL (2.93) BS01 rna ? GO:0003735 ... E9AFK0 38722744
    573813 8rxh:LL (2.93) BS02 rna ? GO:0003735 ... E9AFK0 38722744
    573814 8rxh:LM (2.93) BS01 rna ? GO:0002181 ... Q4Q6S3 38722744
    573815 8rxh:LM (2.93) BS02 rna ? GO:0002181 ... Q4Q6S3 38722744
    573816 8rxh:LM (2.93) BS03 rna ? GO:0002181 ... Q4Q6S3 38722744
    573817 8rxh:LN (2.93) BS01 rna ? GO:0000027 ... O97213 38722744
    573818 8rxh:LN (2.93) BS02 rna ? GO:0000027 ... O97213 38722744
    573819 8rxh:LN (2.93) BS03 rna ? GO:0000027 ... O97213 38722744
    573820 8rxh:LO (2.93) BS01 rna ? GO:0000027 ... E9AF09 38722744
    573821 8rxh:LO (2.93) BS02 rna ? GO:0000027 ... E9AF09 38722744
    573822 8rxh:LO (2.93) BS03 rna ? GO:0000027 ... E9AF09 38722744
    573823 8rxh:LP (2.93) BS01 rna ? GO:0003723 ... Q4QG98 38722744
    573824 8rxh:LP (2.93) BS02 rna ? GO:0003723 ... Q4QG98 38722744
    573825 8rxh:LQ (2.93) BS01 rna ? GO:0003723 ... Q4QJ37 38722744
    573826 8rxh:LQ (2.93) BS02 rna ? GO:0003723 ... Q4QJ37 38722744
    573827 8rxh:LQ (2.93) BS03 rna ? GO:0003723 ... Q4QJ37 38722744
    573828 8rxh:LQ (2.93) BS04 rna ? GO:0003723 ... Q4QJ37 38722744
    573829 8rxh:LQ (2.93) BS05 rna ? GO:0003723 ... Q4QJ37 38722744
    573830 8rxh:LR (2.93) BS01 rna ? GO:0003735 ... Q4Q5J4 38722744
    573831 8rxh:LR (2.93) BS02 rna ? GO:0003735 ... Q4Q5J4 38722744
    573832 8rxh:LR (2.93) BS03 rna ? GO:0003735 ... Q4Q5J4 38722744
    573833 8rxh:LS (2.93) BS01 rna ? GO:0003735 ... Q4QEX4 38722744
    573834 8rxh:LS (2.93) BS02 rna ? GO:0003735 ... Q4QEX4 38722744
    573835 8rxh:LS (2.93) BS03 rna ? GO:0003735 ... Q4QEX4 38722744
    573836 8rxh:LT (2.93) BS01 rna ? GO:0002181 ... Q4QAX6 38722744
    573837 8rxh:LT (2.93) BS02 rna ? GO:0002181 ... Q4QAX6 38722744
    573838 8rxh:LT (2.93) BS03 rna ? GO:0002181 ... Q4QAX6 38722744
    573839 8rxh:LT (2.93) BS04 rna ? GO:0002181 ... Q4QAX6 38722744
    573840 8rxh:LT (2.93) BS05 rna ? GO:0002181 ... Q4QAX6 38722744
    573841 8rxh:LU (2.93) BS01 rna ? GO:0002181 ... Q4Q0X2 38722744
    573842 8rxh:LU (2.93) BS02 rna ? GO:0002181 ... Q4Q0X2 38722744
    573843 8rxh:LU (2.93) BS03 rna ? GO:0002181 ... Q4Q0X2 38722744
    573844 8rxh:LV (2.93) BS01 rna ? GO:0000027 ... Q4QJ20 38722744
    573845 8rxh:LV (2.93) BS02 rna ? GO:0000027 ... Q4QJ20 38722744
    573846 8rxh:LV (2.93) BS03 rna ? GO:0000027 ... Q4QJ20 38722744
    573847 8rxh:LW (2.93) BS01 rna ? GO:0002181 ... Q4QAC5 38722744
    573848 8rxh:LW (2.93) BS02 rna ? GO:0002181 ... Q4QAC5 38722744
    573849 8rxh:LW (2.93) BS03 MG ? GO:0002181 ... Q4QAC5 38722744
    573850 8rxh:LX (2.93) BS01 rna ? GO:0002181 ... Q4Q1W6 38722744
    573851 8rxh:LX (2.93) BS02 rna ? GO:0002181 ... Q4Q1W6 38722744
    573852 8rxh:LX (2.93) BS03 rna ? GO:0002181 ... Q4Q1W6 38722744
    573853 8rxh:LY (2.93) BS01 rna ? GO:0003735 ... Q4Q504 38722744
    573854 8rxh:LY (2.93) BS02 rna ? GO:0003735 ... Q4Q504 38722744
    573855 8rxh:LZ (2.93) BS01 rna ? GO:0003735 ... Q4QGW7 38722744
    573856 8rxh:La (2.93) BS01 rna ? GO:0000463 ... Q4Q8V7 38722744
    573857 8rxh:La (2.93) BS02 rna ? GO:0000463 ... Q4Q8V7 38722744
    573858 8rxh:Lb (2.93) BS01 rna ? GO:0002181 ... Q4Q178 38722744
    573859 8rxh:Lb (2.93) BS02 rna ? GO:0002181 ... Q4Q178 38722744
    573860 8rxh:Lc (2.93) BS01 rna ? GO:0000463 ... Q4Q9H4 38722744
    573861 8rxh:Lc (2.93) BS02 rna ? GO:0000463 ... Q4Q9H4 38722744
    573862 8rxh:Ld (2.93) BS01 rna ? GO:0003723 ... E9AEK1 38722744
    573863 8rxh:Ld (2.93) BS02 rna ? GO:0003723 ... E9AEK1 38722744
    573864 8rxh:Le (2.93) BS01 rna ? GO:0002181 ... E9AFF2 38722744
    573865 8rxh:Le (2.93) BS02 rna ? GO:0002181 ... E9AFF2 38722744
    573866 8rxh:Le (2.93) BS03 rna ? GO:0002181 ... E9AFF2 38722744
    573867 8rxh:Le (2.93) BS04 rna ? GO:0002181 ... E9AFF2 38722744
    573868 8rxh:Lf (2.93) BS01 rna ? GO:0003735 ... Q4QC11 38722744
    573869 8rxh:Lf (2.93) BS02 MG ? GO:0003735 ... Q4QC11 38722744
    573870 8rxh:Lg (2.93) BS01 rna ? GO:0002181 ... Q4QHL3 38722744
    573871 8rxh:Lg (2.93) BS02 rna ? GO:0002181 ... Q4QHL3 38722744
    573872 8rxh:Lg (2.93) BS03 rna ? GO:0002181 ... Q4QHL3 38722744
    573873 8rxh:Lh (2.93) BS01 rna ? GO:0003735 ... Q4QDP9 38722744
    573874 8rxh:Lh (2.93) BS02 rna ? GO:0003735 ... Q4QDP9 38722744
    573875 8rxh:Lh (2.93) BS03 rna ? GO:0003735 ... Q4QDP9 38722744
    573876 8rxh:Li (2.93) BS01 rna ? GO:0002181 ... Q4QCE1 38722744
    573877 8rxh:Li (2.93) BS02 rna ? GO:0002181 ... Q4QCE1 38722744
    573878 8rxh:Lj (2.93) BS01 rna ? GO:0003723 ... E9AEH2 38722744
    573879 8rxh:Lj (2.93) BS02 rna ? GO:0003723 ... E9AEH2 38722744
    573880 8rxh:Lj (2.93) BS03 rna ? GO:0003723 ... E9AEH2 38722744
    573881 8rxh:Lk (2.93) BS01 rna ? GO:0003735 ... Q4Q8X0 38722744
    573882 8rxh:Lk (2.93) BS02 rna ? GO:0003735 ... Q4Q8X0 38722744
    573883 8rxh:Lk (2.93) BS03 rna ? GO:0003735 ... Q4Q8X0 38722744
    573884 8rxh:Ll (2.93) BS01 rna ? GO:0003735 ... Q4QEQ0 38722744
    573885 8rxh:Ll (2.93) BS02 rna ? GO:0003735 ... Q4QEQ0 38722744
    573886 8rxh:Ll (2.93) BS03 rna ? GO:0003735 ... Q4QEQ0 38722744
    573887 8rxh:Lm (2.93) BS01 rna ? GO:0003735 ... P69201 38722744
    573888 8rxh:Lm (2.93) BS02 rna ? GO:0003735 ... P69201 38722744
    573889 8rxh:Lm (2.93) BS03 rna ? GO:0003735 ... P69201 38722744
    573890 8rxh:Ln (2.93) BS01 rna N/A GO:0003735 ... N/A 38722744
    573891 8rxh:Ln (2.93) BS02 rna N/A GO:0003735 ... N/A 38722744
    573892 8rxh:Lo (2.93) BS01 rna ? GO:0003735 ... Q4QC01 38722744
    573893 8rxh:Lo (2.93) BS02 rna ? GO:0003735 ... Q4QC01 38722744
    573894 8rxh:Lo (2.93) BS03 rna ? GO:0003735 ... Q4QC01 38722744
    573895 8rxh:Lp (2.93) BS01 rna ? GO:0003735 ... Q4Q3L3 38722744
    573896 8rxh:Lp (2.93) BS02 rna ? GO:0003735 ... Q4Q3L3 38722744
    573897 8rxh:Lp (2.93) BS03 rna ? GO:0003735 ... Q4Q3L3 38722744
    573898 8rxh:Lp (2.93) BS04 ZN ? GO:0003735 ... Q4Q3L3 38722744
    573899 8rxh:SA (2.93) BS01 rna ? GO:0003735 ... Q4FX73 38722744
    573900 8rxh:SB (2.93) BS01 rna ? GO:0000028 ... Q4Q0Q0 38722744
    573901 8rxh:SC (2.93) BS01 rna ? GO:0003723 ... Q4Q4A0 38722744
    573902 8rxh:SD (2.93) BS01 rna ? GO:0003723 ... Q4QIM3 38722744
    573903 8rxh:SE (2.93) BS01 rna ? GO:0003723 ... Q4QG31 38722744
    573904 8rxh:SF (2.93) BS01 rna ? GO:0003723 ... Q4QDL5 38722744
    573905 8rxh:SG (2.93) BS01 rna ? GO:0003735 ... Q9NE83 38722744
    573906 8rxh:SH (2.93) BS01 rna ? GO:0000028 ... Q868B1 38722744
    573907 8rxh:SH (2.93) BS02 rna ? GO:0000028 ... Q868B1 38722744
    573908 8rxh:SI (2.93) BS01 rna ? GO:0003735 ... E9AC32 38722744
    573909 8rxh:SJ (2.93) BS01 rna ? GO:0003735 ... Q4QGW3 38722744
    573910 8rxh:SK (2.93) BS01 rna ? GO:0000462 ... P25204 38722744
    573911 8rxh:SK (2.93) BS02 rna ? GO:0000462 ... P25204 38722744
    573912 8rxh:SK (2.93) BS03 rna ? GO:0000462 ... P25204 38722744
    573913 8rxh:SL (2.93) BS01 rna ? GO:0000462 ... Q4Q9A5 38722744
    573914 8rxh:SM (2.93) BS01 rna ? GO:0003735 ... Q4Q8G4 38722744
    573915 8rxh:SN (2.93) BS01 rna ? GO:0003723 ... Q4Q1X7 38722744
    573916 8rxh:SO (2.93) BS01 rna ? GO:0000028 ... Q4Q8H1 38722744
    573917 8rxh:SP (2.93) BS01 rna ? GO:0003735 ... Q4QC89 38722744
    573918 8rxh:SQ (2.93) BS01 rna ? GO:0003735 ... Q4QG97 38722744
    573919 8rxh:SR (2.93) BS01 rna ? GO:0003676 ... Q4Q1Y3 38722744
    573920 8rxh:SS (2.93) BS01 rna ? GO:0002181 ... Q4Q817 38722744
    573921 8rxh:ST (2.93) BS01 rna ? GO:0003735 ... Q4Q3M1 38722744
    573922 8rxh:ST (2.93) BS02 rna ? GO:0003735 ... Q4Q3M1 38722744
    573923 8rxh:SU (2.93) BS01 rna N/A GO:0003735 ... N/A 38722744
    573924 8rxh:SV (2.93) BS01 rna ? GO:0003735 ... Q4Q806 38722744
    573925 8rxh:SW (2.93) BS01 rna ? GO:0000028 ... Q4QBV0 38722744
    573926 8rxh:SX (2.93) BS01 rna ? GO:0000028 ... E9AEE8 38722744
    573927 8rxh:SX (2.93) BS02 MG ? GO:0000028 ... E9AEE8 38722744
    573928 8rxh:SY (2.93) BS01 rna ? GO:0000447 ... Q4QH01 38722744
    573929 8rxh:SZ (2.93) BS01 rna ? GO:0003735 ... Q4Q1D2 38722744
    573930 8rxh:Sa (2.93) BS01 rna ? GO:0003735 ... Q4Q9X4 38722744
    573931 8rxh:Sa (2.93) BS02 rna ? GO:0003735 ... Q4Q9X4 38722744
    573932 8rxh:Sa (2.93) BS03 rna ? GO:0003735 ... Q4Q9X4 38722744
    573933 8rxh:Sb (2.93) BS01 rna ? GO:0003729 ... Q4Q8L6 38722744
    573934 8rxh:Sc (2.93) BS01 rna ? GO:0000028 ... Q4Q140 38722744
    573935 8rxh:Sd (2.93) BS01 rna ? GO:0000028 ... Q4Q931 38722744
    573936 8rxh:Se (2.93) BS01 rna ? GO:0003735 ... Q4Q7P0 38722744
    573937 8rxh:Sf (2.93) BS01 rna ? GO:0003735 ... Q4QFK7 38722744
    573938 8rxh:Sg (2.93) BS01 rna ? GO:0005080 ... Q4Q7Y7 38722744
    573939 8rxh:Sh (2.93) BS01 rna ? GO:0003676 ... Q4Q5K7 38722744
    573940 8rxn:A (1.0) BS01 FE ? GO:0005506 ... P00269 1616692
    573941 8rxu:AAA (1.737) BS01 HEC N/A GO:0042279 ... N/A N/A
    573942 8rxu:AAA (1.737) BS02 HEC N/A GO:0042279 ... N/A N/A
    573943 8rxu:AAA (1.737) BS03 HEC N/A GO:0042279 ... N/A N/A
    573944 8rxu:AAA (1.737) BS04 HEC N/A GO:0042279 ... N/A N/A
    573945 8rxu:AAA (1.737) BS05 HEC N/A GO:0042279 ... N/A N/A
    573946 8rxu:AAA (1.737) BS06 HEC N/A GO:0042279 ... N/A N/A
    573947 8rxu:AAA (1.737) BS07 HEC N/A GO:0042279 ... N/A N/A
    573948 8rxu:AAA (1.737) BS08 HEC N/A GO:0042279 ... N/A N/A
    573949 8rxu:AAA (1.737) BS09 CA N/A GO:0042279 ... N/A N/A
    573950 8rxu:MMM (1.737) BS01 HEC N/A GO:0042279 ... N/A N/A
    573951 8rxu:MMM (1.737) BS02 HEC N/A GO:0042279 ... N/A N/A
    573952 8rxu:MMM (1.737) BS03 HEC N/A GO:0042279 ... N/A N/A
    573953 8rxu:MMM (1.737) BS04 HEC N/A GO:0042279 ... N/A N/A
    573954 8rxu:MMM (1.737) BS05 HEC N/A GO:0042279 ... N/A N/A
    573955 8rxu:MMM (1.737) BS06 HEC N/A GO:0042279 ... N/A N/A
    573956 8rxu:MMM (1.737) BS07 HEC N/A GO:0042279 ... N/A N/A
    573957 8rxu:MMM (1.737) BS08 HEC N/A GO:0042279 ... N/A N/A
    573958 8rxu:MMM (1.737) BS09 CA N/A GO:0042279 ... N/A N/A
    573959 8rxu:YYY (1.737) BS01 HEC N/A GO:0042279 ... N/A N/A
    573960 8rxu:YYY (1.737) BS02 HEC N/A GO:0042279 ... N/A N/A
    573961 8rxu:YYY (1.737) BS03 HEC N/A GO:0042279 ... N/A N/A
    573962 8rxu:YYY (1.737) BS04 HEC N/A GO:0042279 ... N/A N/A
    573963 8rxu:YYY (1.737) BS05 HEC N/A GO:0042279 ... N/A N/A
    573964 8rxu:YYY (1.737) BS06 HEC N/A GO:0042279 ... N/A N/A
    573965 8rxu:YYY (1.737) BS07 HEC N/A GO:0042279 ... N/A N/A
    573966 8rxu:YYY (1.737) BS08 HEC N/A GO:0042279 ... N/A N/A
    573967 8rxu:YYY (1.737) BS09 CA N/A GO:0042279 ... N/A N/A
    573968 8rxx:LA (2.97) BS01 rna ? GO:0002181 ... Q4FWX5 38722744
    573969 8rxx:LA (2.97) BS02 rna ? GO:0002181 ... Q4FWX5 38722744
    573970 8rxx:LA (2.97) BS03 rna ? GO:0002181 ... Q4FWX5 38722744
    573971 8rxx:LA (2.97) BS04 rna ? GO:0002181 ... Q4FWX5 38722744
    573972 8rxx:LB (2.97) BS01 rna ? GO:0003723 ... Q4Q2Q6 38722744
    573973 8rxx:LB (2.97) BS02 rna ? GO:0003723 ... Q4Q2Q6 38722744
    573974 8rxx:LB (2.97) BS03 rna ? GO:0003723 ... Q4Q2Q6 38722744
    573975 8rxx:LB (2.97) BS04 rna ? GO:0003723 ... Q4Q2Q6 38722744
    573976 8rxx:LC (2.97) BS01 rna ? GO:0003723 ... E9ADW5 38722744
    573977 8rxx:LC (2.97) BS02 rna ? GO:0003723 ... E9ADW5 38722744
    573978 8rxx:LC (2.97) BS03 rna ? GO:0003723 ... E9ADW5 38722744
    573979 8rxx:LD (2.97) BS01 rna ? GO:0003723 ... P48157 38722744
    573980 8rxx:LD (2.97) BS02 rna ? GO:0003723 ... P48157 38722744
    573981 8rxx:LD (2.97) BS03 rna ? GO:0003723 ... P48157 38722744
    573982 8rxx:LE (2.97) BS01 rna ? GO:0002181 ... Q4QC91 38722744
    573983 8rxx:LE (2.97) BS02 rna ? GO:0002181 ... Q4QC91 38722744
    573984 8rxx:LE (2.97) BS03 rna ? GO:0002181 ... Q4QC91 38722744
    573985 8rxx:LE (2.97) BS04 rna ? GO:0002181 ... Q4QC91 38722744
    573986 8rxx:LF (2.97) BS01 rna ? GO:0000027 ... Q4Q4D3 38722744
    573987 8rxx:LF (2.97) BS02 rna ? GO:0000027 ... Q4Q4D3 38722744
    573988 8rxx:LG (2.97) BS01 rna ? GO:0000470 ... Q4QIP1 38722744
    573989 8rxx:LG (2.97) BS02 rna ? GO:0000470 ... Q4QIP1 38722744
    573990 8rxx:LG (2.97) BS03 rna ? GO:0000470 ... Q4QIP1 38722744
    573991 8rxx:LH (2.97) BS01 rna ? GO:0003729 ... Q4QFG2 38722744
    573992 8rxx:LH (2.97) BS02 rna ? GO:0003729 ... Q4QFG2 38722744
    573993 8rxx:LH (2.97) BS03 rna ? GO:0003729 ... Q4QFG2 38722744
    573994 8rxx:LH (2.97) BS04 rna ? GO:0003729 ... Q4QFG2 38722744
    573995 8rxx:LI (2.97) BS01 rna ? GO:0003723 ... E9AEA8 38722744
    573996 8rxx:LI (2.97) BS02 rna ? GO:0003723 ... E9AEA8 38722744
    573997 8rxx:LI (2.97) BS03 rna ? GO:0003723 ... E9AEA8 38722744
    573998 8rxx:LJ (2.97) BS01 rna ? GO:0003735 ... E9AFK3 38722744
    573999 8rxx:LJ (2.97) BS02 rna ? GO:0003735 ... E9AFK3 38722744
    574000 8rxx:LK (2.97) BS01 rna ? GO:0003723 ... Q4QBJ1 38722744
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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