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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    573601 8rt4:S (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573602 8rt4:V (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573603 8rt4:Y (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573604 8rt4:b (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573605 8rt4:e (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573606 8rt4:h (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573607 8rt4:k (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573608 8rt4:n (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573609 8rt6:A (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573610 8rt6:D (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573611 8rt6:J (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573612 8rt6:P (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573613 8rt6:S (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573614 8rt6:V (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573615 8rt6:Y (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573616 8rt6:h (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573617 8rt6:k (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573618 8rt6:n (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573619 8rt7:A (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573620 8rt7:D (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573621 8rt7:G (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573622 8rt7:J (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573623 8rt7:M (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573624 8rt7:P (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573625 8rt7:S (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573626 8rt7:V (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573627 8rt7:Y (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573628 8rt7:b (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573629 8rt7:e (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573630 8rt7:h (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573631 8rt7:k (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573632 8rt7:n (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573633 8rt8:A (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573634 8rt8:D (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573635 8rt8:G (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573636 8rt8:J (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573637 8rt8:M (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573638 8rt8:P (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573639 8rt8:S (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573640 8rt8:V (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573641 8rt8:Y (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573642 8rt8:b (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573643 8rt8:e (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573644 8rt8:h (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573645 8rt8:k (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573646 8rt8:n (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573647 8rta:E (6.22) BS01 peptide N/A GO:0005515 ... O50335 38886579
    573648 8rtc:A (2.83) BS01 peptide N/A GO:0005737 ... A0A1P8CWN8 39137235
    573649 8rtc:A (2.83) BS02 A1H22 N/A GO:0005737 ... A0A1P8CWN8 39137235
    573650 8rtc:A (2.83) BS03 A1H22 N/A GO:0005737 ... A0A1P8CWN8 39137235
    573651 8rtc:A (2.83) BS04 A1H22 N/A GO:0005737 ... A0A1P8CWN8 39137235
    573652 8rtc:B (2.83) BS01 peptide N/A GO:0005737 ... A0A1P8CWN8 39137235
    573653 8rtc:B (2.83) BS02 A1H22 N/A GO:0005737 ... A0A1P8CWN8 39137235
    573654 8rth:A (2.37) BS01 BTI ? GO:0004485 ... Q57YQ4 38593794
    573655 8rth:B (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    573656 8rth:C (2.37) BS01 BTI ? GO:0004485 ... Q57YQ4 38593794
    573657 8rth:D (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    573658 8rth:E (2.37) BS01 BTI ? GO:0004485 ... Q57YQ4 38593794
    573659 8rth:F (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    573660 8rth:G (2.37) BS01 BTI ? GO:0004485 ... Q57YQ4 38593794
    573661 8rth:H (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    573662 8rth:I (2.37) BS01 BTI ? GO:0004485 ... Q57YQ4 38593794
    573663 8rth:J (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    573664 8rth:K (2.37) BS01 BTI ? GO:0004485 ... Q57YQ4 38593794
    573665 8rth:L (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    573666 8rtt:A (3.56) BS01 peptide 3.6.4.- GO:0000079 ... P60709 38603491
    573667 8rtt:A (3.56) BS02 ADP 3.6.4.- GO:0000079 ... P60709 38603491
    573668 8rtt:B (3.56) BS01 peptide 3.6.4.- GO:0000079 ... P60709 38603491
    573669 8rtt:B (3.56) BS02 peptide 3.6.4.- GO:0000079 ... P60709 38603491
    573670 8rtt:B (3.56) BS03 ADP 3.6.4.- GO:0000079 ... P60709 38603491
    573671 8rtt:C (3.56) BS01 peptide 3.6.4.- GO:0000079 ... P60709 38603491
    573672 8rtt:C (3.56) BS02 peptide 3.6.4.- GO:0000079 ... P60709 38603491
    573673 8rtt:C (3.56) BS03 ADP 3.6.4.- GO:0000079 ... P60709 38603491
    573674 8rtt:D (3.56) BS01 peptide 3.6.4.- GO:0000079 ... P60709 38603491
    573675 8rtt:D (3.56) BS02 ADP 3.6.4.- GO:0000079 ... P60709 38603491
    573676 8rty:A (6.25) BS01 ADP 3.6.4.- GO:0000079 ... P60709 38603491
    573677 8rty:B (6.25) BS01 peptide 3.6.4.- GO:0000079 ... P60709 38603491
    573678 8rty:B (6.25) BS02 peptide 3.6.4.- GO:0000079 ... P60709 38603491
    573679 8rty:B (6.25) BS03 ADP 3.6.4.- GO:0000079 ... P60709 38603491
    573680 8rty:C (6.25) BS01 peptide 3.6.4.- GO:0000079 ... P60709 38603491
    573681 8rty:C (6.25) BS02 peptide 3.6.4.- GO:0000079 ... P60709 38603491
    573682 8rty:C (6.25) BS03 ADP 3.6.4.- GO:0000079 ... P60709 38603491
    573683 8rty:D (6.25) BS01 peptide 3.6.4.- GO:0000079 ... P60709 38603491
    573684 8rty:D (6.25) BS02 ADP 3.6.4.- GO:0000079 ... P60709 38603491
    573685 8ru0:A (3.08) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38603491
    573686 8ru0:B (3.08) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38603491
    573687 8ru0:C (3.08) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38603491
    573688 8ru0:D (3.08) BS01 ATP 3.6.4.- GO:0000287 ... P68135 38603491
    573689 8ru2:B (3.49) BS01 ADP 3.6.4.- GO:0000079 ... P60709 38603491
    573690 8ru2:C (3.49) BS01 ADP 3.6.4.- GO:0000079 ... P60709 38603491
    573691 8ru2:D (3.49) BS01 ADP 3.6.4.- GO:0000079 ... P60709 38603491
    573692 8ru8:A (1.51) BS01 I74 N/A GO:0000082 ... P24941 38870939
    573693 8ruc:A (1.6) BS01 MG 4.1.1.39 GO:0000287 ... P00875 8648644
    573694 8ruc:A (1.6) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 8648644
    573695 8ruc:C (1.6) BS01 MG 4.1.1.39 GO:0000287 ... P00875 8648644
    573696 8ruc:C (1.6) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 8648644
    573697 8ruc:E (1.6) BS01 MG 4.1.1.39 GO:0000287 ... P00875 8648644
    573698 8ruc:E (1.6) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 8648644
    573699 8ruc:G (1.6) BS01 MG 4.1.1.39 GO:0000287 ... P00875 8648644
    573700 8ruc:G (1.6) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 8648644
    573701 8rv0:Y (1.55) BS01 HEC N/A GO:0042279 ... N/A N/A
    573702 8rv0:Y (1.55) BS02 HEC N/A GO:0042279 ... N/A N/A
    573703 8rv0:Y (1.55) BS03 HEC N/A GO:0042279 ... N/A N/A
    573704 8rv0:Y (1.55) BS04 HEC N/A GO:0042279 ... N/A N/A
    573705 8rv0:Y (1.55) BS05 HEC N/A GO:0042279 ... N/A N/A
    573706 8rv0:Y (1.55) BS06 HEC N/A GO:0042279 ... N/A N/A
    573707 8rv0:Y (1.55) BS07 HEC N/A GO:0042279 ... N/A N/A
    573708 8rv0:Y (1.55) BS08 HEC N/A GO:0042279 ... N/A N/A
    573709 8rv0:Y (1.55) BS09 NO2 N/A GO:0042279 ... N/A N/A
    573710 8rv0:Y (1.55) BS10 CA N/A GO:0042279 ... N/A N/A
    573711 8rv2:A (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38603491
    573712 8rv2:B (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38603491
    573713 8rv2:C (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38603491
    573714 8rv2:D (3.41) BS01 ATP 3.6.4.- GO:0000287 ... P68135 38603491
    573715 8rve:i (7.2) BS01 peptide ? GO:0003723 ... P08670 38632361
    573716 8rve:i (7.2) BS02 peptide ? GO:0003723 ... P08670 38632361
    573717 8rve:j (7.2) BS01 peptide ? GO:0003723 ... P08670 38632361
    573718 8rvk:A (2.18) BS01 A1H3V 2.4.1.1 GO:0004645 ... P00490 38623783
    573719 8rvm:YYY (1.6) BS01 HEC N/A GO:0042279 ... N/A N/A
    573720 8rvm:YYY (1.6) BS02 HEC N/A GO:0042279 ... N/A N/A
    573721 8rvm:YYY (1.6) BS03 HEC N/A GO:0042279 ... N/A N/A
    573722 8rvm:YYY (1.6) BS04 HEC N/A GO:0042279 ... N/A N/A
    573723 8rvm:YYY (1.6) BS05 HEC N/A GO:0042279 ... N/A N/A
    573724 8rvm:YYY (1.6) BS06 HEC N/A GO:0042279 ... N/A N/A
    573725 8rvm:YYY (1.6) BS07 HEC N/A GO:0042279 ... N/A N/A
    573726 8rvm:YYY (1.6) BS08 HEC N/A GO:0042279 ... N/A N/A
    573727 8rvm:YYY (1.6) BS09 CA N/A GO:0042279 ... N/A N/A
    573728 8rwj:A (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    573729 8rwj:B (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    573730 8rwj:C (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    573731 8rwj:D (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    573732 8rwj:E (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    573733 8rwj:F (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    573734 8rwj:G (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    573735 8rwj:H (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    573736 8rwj:I (3.5) BS01 6R9 N/A GO:0003987 ... N1P7N2 38906101
    573737 8rwk:A (3.8) BS01 NAP N/A GO:0004029 ... P46367 38906101
    573738 8rwk:B (3.8) BS01 NAP N/A GO:0004029 ... P46367 38906101
    573739 8rwk:C (3.8) BS01 NAP N/A GO:0004029 ... P46367 38906101
    573740 8rwk:D (3.8) BS01 NAP N/A GO:0004029 ... P46367 38906101
    573741 8rwy:A (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    573742 8rwy:B (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    573743 8rwy:C (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    573744 8rwy:D (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    573745 8rwy:E (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    573746 8rwy:F (3.02) BS01 HEM N/A GO:0004601 ... A0A7U8UU09 38864770
    573747 8rwz:R (4.0) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 N/A
    573748 8rwz:R (4.0) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 N/A
    573749 8rwz:R (4.0) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 N/A
    573750 8rx0:R (3.7) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 N/A
    573751 8rx0:R (3.7) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 N/A
    573752 8rx0:R (3.7) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 N/A
    573753 8rx3:A (1.85) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002
    573754 8rx3:A (1.85) BS02 A1H3T 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002
    573755 8rx7:A (1.85) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002
    573756 8rx7:A (1.85) BS02 A1H3S 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002
    573757 8rx9:A (2.9) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002
    573758 8rx9:A (2.9) BS02 A1H3U 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 38476002
    573759 8rxb:A (2.6) BS01 peptide 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573760 8rxb:A (2.6) BS02 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573761 8rxb:A (2.6) BS03 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573762 8rxb:D (2.6) BS01 peptide 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573763 8rxb:D (2.6) BS02 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573764 8rxb:D (2.6) BS03 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573765 8rxb:E (2.6) BS01 peptide 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573766 8rxb:E (2.6) BS02 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573767 8rxb:E (2.6) BS03 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573768 8rxb:I (2.6) BS01 peptide 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573769 8rxb:I (2.6) BS02 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573770 8rxb:I (2.6) BS03 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573771 8rxb:L (2.6) BS01 peptide 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573772 8rxb:L (2.6) BS02 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573773 8rxb:L (2.6) BS03 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573774 8rxb:P (2.6) BS01 peptide 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573775 8rxb:P (2.6) BS02 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573776 8rxb:P (2.6) BS03 ZN 3.6.4.12
    3.6.4.13
    GO:0000184 ... Q92900 38709891
    573777 8rxh:LA (2.93) BS01 rna ? GO:0002181 ... Q4FWX5 38722744
    573778 8rxh:LA (2.93) BS02 rna ? GO:0002181 ... Q4FWX5 38722744
    573779 8rxh:LA (2.93) BS03 rna ? GO:0002181 ... Q4FWX5 38722744
    573780 8rxh:LA (2.93) BS04 rna ? GO:0002181 ... Q4FWX5 38722744
    573781 8rxh:LB (2.93) BS01 rna ? GO:0003723 ... Q4Q2Q6 38722744
    573782 8rxh:LB (2.93) BS02 rna ? GO:0003723 ... Q4Q2Q6 38722744
    573783 8rxh:LB (2.93) BS03 rna ? GO:0003723 ... Q4Q2Q6 38722744
    573784 8rxh:LB (2.93) BS04 rna ? GO:0003723 ... Q4Q2Q6 38722744
    573785 8rxh:LC (2.93) BS01 rna ? GO:0003723 ... E9ADW5 38722744
    573786 8rxh:LC (2.93) BS02 rna ? GO:0003723 ... E9ADW5 38722744
    573787 8rxh:LC (2.93) BS03 rna ? GO:0003723 ... E9ADW5 38722744
    573788 8rxh:LC (2.93) BS04 MG ? GO:0003723 ... E9ADW5 38722744
    573789 8rxh:LD (2.93) BS01 rna ? GO:0003723 ... P48157 38722744
    573790 8rxh:LD (2.93) BS02 rna ? GO:0003723 ... P48157 38722744
    573791 8rxh:LE (2.93) BS01 rna ? GO:0002181 ... Q4QC91 38722744
    573792 8rxh:LE (2.93) BS02 rna ? GO:0002181 ... Q4QC91 38722744
    573793 8rxh:LE (2.93) BS03 rna ? GO:0002181 ... Q4QC91 38722744
    573794 8rxh:LE (2.93) BS04 rna ? GO:0002181 ... Q4QC91 38722744
    573795 8rxh:LF (2.93) BS01 rna ? GO:0000027 ... Q4Q4D3 38722744
    573796 8rxh:LF (2.93) BS02 rna ? GO:0000027 ... Q4Q4D3 38722744
    573797 8rxh:LG (2.93) BS01 rna ? GO:0000470 ... Q4QIP1 38722744
    573798 8rxh:LG (2.93) BS02 rna ? GO:0000470 ... Q4QIP1 38722744
    573799 8rxh:LG (2.93) BS03 rna ? GO:0000470 ... Q4QIP1 38722744
    573800 8rxh:LH (2.93) BS01 rna ? GO:0003729 ... Q4QFG2 38722744

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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