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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    573401 8rpz:F (2.44) BS01 rna ? GO:0000027 ... P62399 38730238
    573402 8rpz:F (2.44) BS02 rna ? GO:0000027 ... P62399 38730238
    573403 8rpz:G (2.44) BS01 rna ? GO:0000027 ... P0AG55 38730238
    573404 8rpz:H (2.44) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    573405 8rpz:J (2.44) BS01 rna ? GO:0002181 ... P0AA10 38730238
    573406 8rpz:K (2.44) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    573407 8rpz:L (2.44) BS01 rna ? GO:0002181 ... P02413 38730238
    573408 8rpz:M (2.44) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    573409 8rpz:M (2.44) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    573410 8rpz:N (2.44) BS01 rna ? GO:0000027 ... P0AG44 38730238
    573411 8rpz:O (2.44) BS01 rna ? GO:0002181 ... P0C018 38730238
    573412 8rpz:O (2.44) BS02 rna ? GO:0002181 ... P0C018 38730238
    573413 8rpz:P (2.44) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    573414 8rpz:Q (2.44) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    573415 8rpz:R (2.44) BS01 rna ? GO:0002181 ... P0AG48 38730238
    573416 8rpz:S (2.44) BS01 rna ? GO:0002181 ... P61175 38730238
    573417 8rpz:T (2.44) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    573418 8rpz:T (2.44) BS02 peptide ? GO:0000027 ... P0ADZ0 38730238
    573419 8rpz:U (2.44) BS01 rna ? GO:0000027 ... P60624 38730238
    573420 8rpz:V (2.44) BS01 rna ? GO:0000027 ... P68919 38730238
    573421 8rpz:X (2.44) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    573422 8rpz:Y (2.44) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    573423 8rpz:Z (2.44) BS01 rna ? GO:0000027 ... P0AG51 38730238
    573424 8rq0:0 (2.44) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    573425 8rq0:1 (2.44) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    573426 8rq0:2 (2.44) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    573427 8rq0:3 (2.44) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    573428 8rq0:4 (2.44) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    573429 8rq0:6 (2.44) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    573430 8rq0:C (2.44) BS01 rna ? GO:0000027 ... P60422 38730238
    573431 8rq0:D (2.44) BS01 rna ? GO:0000027 ... P60438 38730238
    573432 8rq0:E (2.44) BS01 rna ? GO:0001070 ... P60723 38730238
    573433 8rq0:E (2.44) BS02 peptide ? GO:0001070 ... P60723 38730238
    573434 8rq0:F (2.44) BS01 rna ? GO:0000027 ... P62399 38730238
    573435 8rq0:F (2.44) BS02 rna ? GO:0000027 ... P62399 38730238
    573436 8rq0:G (2.44) BS01 rna ? GO:0000027 ... P0AG55 38730238
    573437 8rq0:H (2.44) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    573438 8rq0:J (2.44) BS01 rna ? GO:0002181 ... P0AA10 38730238
    573439 8rq0:K (2.44) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    573440 8rq0:L (2.44) BS01 rna ? GO:0002181 ... P02413 38730238
    573441 8rq0:M (2.44) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    573442 8rq0:M (2.44) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    573443 8rq0:N (2.44) BS01 rna ? GO:0000027 ... P0AG44 38730238
    573444 8rq0:O (2.44) BS01 rna ? GO:0002181 ... P0C018 38730238
    573445 8rq0:O (2.44) BS02 rna ? GO:0002181 ... P0C018 38730238
    573446 8rq0:P (2.44) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    573447 8rq0:Q (2.44) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    573448 8rq0:R (2.44) BS01 rna ? GO:0002181 ... P0AG48 38730238
    573449 8rq0:S (2.44) BS01 rna ? GO:0002181 ... P61175 38730238
    573450 8rq0:S (2.44) BS02 peptide ? GO:0002181 ... P61175 38730238
    573451 8rq0:T (2.44) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    573452 8rq0:T (2.44) BS02 peptide ? GO:0000027 ... P0ADZ0 38730238
    573453 8rq0:U (2.44) BS01 rna ? GO:0000027 ... P60624 38730238
    573454 8rq0:V (2.44) BS01 rna ? GO:0000027 ... P68919 38730238
    573455 8rq0:X (2.44) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    573456 8rq0:Y (2.44) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    573457 8rq0:Z (2.44) BS01 rna ? GO:0000027 ... P0AG51 38730238
    573458 8rq2:0 (2.44) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    573459 8rq2:1 (2.44) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    573460 8rq2:2 (2.44) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    573461 8rq2:3 (2.44) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    573462 8rq2:4 (2.44) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    573463 8rq2:6 (2.44) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    573464 8rq2:C (2.44) BS01 rna ? GO:0000027 ... P60422 38730238
    573465 8rq2:D (2.44) BS01 rna ? GO:0000027 ... P60438 38730238
    573466 8rq2:E (2.44) BS01 rna ? GO:0001070 ... P60723 38730238
    573467 8rq2:E (2.44) BS02 peptide ? GO:0001070 ... P60723 38730238
    573468 8rq2:F (2.44) BS01 rna ? GO:0000027 ... P62399 38730238
    573469 8rq2:F (2.44) BS02 rna ? GO:0000027 ... P62399 38730238
    573470 8rq2:G (2.44) BS01 rna ? GO:0000027 ... P0AG55 38730238
    573471 8rq2:H (2.44) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    573472 8rq2:J (2.44) BS01 rna ? GO:0002181 ... P0AA10 38730238
    573473 8rq2:K (2.44) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    573474 8rq2:L (2.44) BS01 rna ? GO:0002181 ... P02413 38730238
    573475 8rq2:M (2.44) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    573476 8rq2:M (2.44) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    573477 8rq2:N (2.44) BS01 rna ? GO:0000027 ... P0AG44 38730238
    573478 8rq2:O (2.44) BS01 rna ? GO:0002181 ... P0C018 38730238
    573479 8rq2:O (2.44) BS02 rna ? GO:0002181 ... P0C018 38730238
    573480 8rq2:P (2.44) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    573481 8rq2:Q (2.44) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    573482 8rq2:R (2.44) BS01 rna ? GO:0002181 ... P0AG48 38730238
    573483 8rq2:S (2.44) BS01 rna ? GO:0002181 ... P61175 38730238
    573484 8rq2:S (2.44) BS02 peptide ? GO:0002181 ... P61175 38730238
    573485 8rq2:T (2.44) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    573486 8rq2:T (2.44) BS02 peptide ? GO:0000027 ... P0ADZ0 38730238
    573487 8rq2:U (2.44) BS01 rna ? GO:0000027 ... P60624 38730238
    573488 8rq2:V (2.44) BS01 rna ? GO:0000027 ... P68919 38730238
    573489 8rq2:X (2.44) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    573490 8rq2:Y (2.44) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    573491 8rq2:Z (2.44) BS01 rna ? GO:0000027 ... P0AG51 38730238
    573492 8rq4:A (3.45) BS01 Y01 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0005515 ... Q63120 38438394
    573493 8rq4:A (3.45) BS02 RTO 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0005515 ... Q63120 38438394
    573494 8rq4:A (3.45) BS03 RTO 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0005515 ... Q63120 38438394
    573495 8rqb:A (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573496 8rqb:B (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573497 8rqb:C (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573498 8rqb:D (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573499 8rqb:E (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573500 8rqb:F (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573501 8rqb:G (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573502 8rqb:H (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573503 8rqb:I (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573504 8rqb:J (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573505 8rqb:K (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573506 8rqb:L (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573507 8rqb:M (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573508 8rqb:N (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573509 8rqb:O (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573510 8rqb:P (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573511 8rqb:Q (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573512 8rqb:R (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573513 8rqb:S (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573514 8rqb:T (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573515 8rqb:U (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573516 8rqb:V (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573517 8rqb:W (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573518 8rqb:X (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    573519 8rqf:A (3.41) BS01 BJU ? GO:0001618 ... Q14973 N/A
    573520 8rqh:A (2.5) BS01 FAD ? GO:0000166 ... A0A2S1JZI9 38784727
    573521 8rqh:B (2.5) BS01 FAD ? GO:0000166 ... A0A2S1JZI9 38784727
    573522 8rqp:A (1.45) BS01 A1H2K ? GO:0009279 ... P18895 38585376
    573523 8rqp:A (1.45) BS02 A1H2K ? GO:0009279 ... P18895 38585376
    573524 8rqp:A (1.45) BS03 A1H2K ? GO:0009279 ... P18895 38585376
    573525 8rqp:A (1.45) BS04 A1H2K ? GO:0009279 ... P18895 38585376
    573526 8rqp:A (1.45) BS05 A1H2K ? GO:0009279 ... P18895 38585376
    573527 8rqp:A (1.45) BS06 A1H2K ? GO:0009279 ... P18895 38585376
    573528 8rqp:A (1.45) BS07 A1H2K ? GO:0009279 ... P18895 38585376
    573529 8rqp:A (1.45) BS08 A1H2K ? GO:0009279 ... P18895 38585376
    573530 8rqp:A (1.45) BS09 GOL ? GO:0009279 ... P18895 38585376
    573531 8rqp:A (1.45) BS10 A1H52 ? GO:0009279 ... P18895 38585376
    573532 8rqp:A (1.45) BS11 A1H2K ? GO:0009279 ... P18895 38585376
    573533 8rqp:A (1.45) BS12 A1H52 ? GO:0009279 ... P18895 38585376
    573534 8rqp:A (1.45) BS13 CA ? GO:0009279 ... P18895 38585376
    573535 8rqq:A (2.37) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573536 8rqq:A (2.37) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573537 8rqq:A (2.37) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573538 8rqq:A (2.37) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573539 8rqq:A (2.37) BS05 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573540 8rqq:A (2.37) BS06 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573541 8rqq:A (2.37) BS07 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573542 8rqq:A (2.37) BS08 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573543 8rqq:A (2.37) BS09 A1H52 ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573544 8rqq:A (2.37) BS10 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573545 8rqq:A (2.37) BS11 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573546 8rqq:A (2.37) BS12 A1H2K ? GO:0001609 ... P0ABE7
    P29274
    38585376
    573547 8rqr:A (2.19) BS01 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    573548 8rqr:A (2.19) BS02 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    573549 8rqr:A (2.19) BS03 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    573550 8rqr:A (2.19) BS04 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    573551 8rqr:A (2.19) BS05 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    573552 8rqr:A (2.19) BS06 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    573553 8rqr:A (2.19) BS07 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    573554 8rqr:A (2.19) BS08 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    573555 8rqr:A (2.19) BS09 GOL 2.3.1.269 GO:0005515 ... P23930 38585376
    573556 8rqr:A (2.19) BS10 GOL 2.3.1.269 GO:0005515 ... P23930 38585376
    573557 8rry:A (1.45561) BS01 CU ? GO:0000272 ... P9WEM3 38814816
    573558 8rry:B (1.45561) BS01 CU ? GO:0000272 ... P9WEM3 38814816
    573559 8rsa:A (1.8) BS01 ADT 4.6.1.18 GO:0003676 ... P61823 2340284
    573560 8rsa:B (1.8) BS01 ADT 4.6.1.18 GO:0003676 ... P61823 2340284
    573561 8rsb:A (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573562 8rsb:A (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573563 8rsb:B (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573564 8rsb:B (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573565 8rsb:C (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573566 8rsb:C (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573567 8rsb:D (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573568 8rsb:D (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573569 8rsb:E (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573570 8rsb:E (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573571 8rsb:F (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573572 8rsb:F (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573573 8rsc:A (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573574 8rsc:B (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573575 8rsc:C (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573576 8rsc:C (3.6) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573577 8rsc:D (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573578 8rsc:D (3.6) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573579 8rsc:E (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573580 8rsc:E (3.6) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573581 8rsc:F (3.6) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573582 8rsc:F (3.6) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    573583 8rst:A (2.56) BS01 peptide N/A GO:0005737 ... A0A1P8CWN8 39137235
    573584 8rst:A (2.56) BS02 A1H22 N/A GO:0005737 ... A0A1P8CWN8 39137235
    573585 8rst:A (2.56) BS03 FU1 N/A GO:0005737 ... A0A1P8CWN8 39137235
    573586 8rst:A (2.56) BS04 FU1 N/A GO:0005737 ... A0A1P8CWN8 39137235
    573587 8rsu:A (2.4) BS01 peptide N/A GO:0005737 ... A0A1P8CWN8 39137235
    573588 8rsu:A (2.4) BS02 A1H22 N/A GO:0005737 ... A0A1P8CWN8 39137235
    573589 8rsv:A (2.19) BS01 peptide N/A GO:0005737 ... A0A1P8CWN8 39137235
    573590 8rsv:A (2.19) BS02 A1H22 N/A GO:0005737 ... A0A1P8CWN8 39137235
    573591 8rsv:B (2.19) BS01 peptide N/A GO:0005737 ... A0A1P8CWN8 39137235
    573592 8rsv:B (2.19) BS02 A1H22 N/A GO:0005737 ... A0A1P8CWN8 39137235
    573593 8rt2:A (0.8) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 N/A
    573594 8rt3:A (1.09) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 N/A
    573595 8rt4:A (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573596 8rt4:D (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573597 8rt4:G (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573598 8rt4:J (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573599 8rt4:M (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579
    573600 8rt4:P (2.46) BS01 peptide N/A GO:0005515 ... O50337 38886579

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218