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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    573201 8rjc:h (2.90061) BS02 rna ? GO:0000463 ... G1SIT5 38896445
    573202 8rjc:i (2.90061) BS01 rna ? GO:0002181 ... G1TTQ5 38896445
    573203 8rjc:j (2.90061) BS01 rna ? GO:0003723 ... U3KPD5 38896445
    573204 8rjc:j (2.90061) BS02 rna ? GO:0003723 ... U3KPD5 38896445
    573205 8rjc:j (2.90061) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    573206 8rjc:k (2.90061) BS01 rna ? GO:0003735 ... G1U001 38896445
    573207 8rjc:l (2.90061) BS01 rna ? GO:0003735 ... G1TTN1 38896445
    573208 8rjc:l (2.90061) BS02 rna ? GO:0003735 ... G1TTN1 38896445
    573209 8rjc:m (2.90061) BS01 rna N/A GO:0003735 ... N/A 38896445
    573210 8rjc:m (2.90061) BS02 ZN N/A GO:0003735 ... N/A 38896445
    573211 8rjc:o (2.90061) BS01 rna ? GO:0003735 ... G1T040 38896445
    573212 8rjc:o (2.90061) BS02 ZN ? GO:0003735 ... G1T040 38896445
    573213 8rjc:p (2.90061) BS01 rna ? GO:0003735 ... G1SY53 38896445
    573214 8rjc:p (2.90061) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    573215 8rjc:r (2.90061) BS01 rna ? GO:0003735 ... G1U7L1 38896445
    573216 8rjc:w (2.90061) BS01 rna ? GO:0003723 ... G1TL06 38896445
    573217 8rjd:1 (2.78574) BS01 rna ? GO:0005048 ... P38377 38896445
    573218 8rjd:4 (2.78574) BS01 rna ? GO:0001501 ... A0A8C0RGL8 38896445
    573219 8rjd:5 (2.78574) BS01 rna ? GO:0005789 ... P16967 38896445
    573220 8rjd:7 (2.78574) BS01 rna ? GO:0005783 ... A0A8C0T6I4 38896445
    573221 8rjd:A (2.78574) BS01 rna ? GO:0002181 ... G1TT27 38896445
    573222 8rjd:B (2.78574) BS01 rna N/A GO:0003779 ... N/A 38896445
    573223 8rjd:C (2.78574) BS01 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    573224 8rjd:C (2.78574) BS02 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    573225 8rjd:D (2.78574) BS01 rna ? GO:0000027 ... P19949 38896445
    573226 8rjd:D (2.78574) BS02 rna ? GO:0000027 ... P19949 38896445
    573227 8rjd:E (2.78574) BS01 rna ? GO:0000027 ... G1SKF7 38896445
    573228 8rjd:F (2.78574) BS01 rna ? GO:0000463 ... G1TUB1 38896445
    573229 8rjd:F (2.78574) BS02 rna ? GO:0000463 ... G1TUB1 38896445
    573230 8rjd:G (2.78574) BS01 rna ? GO:0000470 ... G1STW0 38896445
    573231 8rjd:G (2.78574) BS02 rna ? GO:0000470 ... G1STW0 38896445
    573232 8rjd:H (2.78574) BS01 rna ? GO:0002181 ... G1SWI6 38896445
    573233 8rjd:I (2.78574) BS01 rna ? GO:0000027 ... B7NZQ2 38896445
    573234 8rjd:I (2.78574) BS02 rna ? GO:0000027 ... B7NZQ2 38896445
    573235 8rjd:J (2.78574) BS01 rna ? GO:0003723 ... G1TUB8 38896445
    573236 8rjd:J (2.78574) BS02 rna ? GO:0003723 ... G1TUB8 38896445
    573237 8rjd:J (2.78574) BS03 rna ? GO:0003723 ... G1TUB8 38896445
    573238 8rjd:L (2.78574) BS01 rna ? GO:0003735 ... G1TPV0 38896445
    573239 8rjd:L (2.78574) BS02 rna ? GO:0003735 ... G1TPV0 38896445
    573240 8rjd:M (2.78574) BS01 rna ? GO:0003723 ... G1SZ12 38896445
    573241 8rjd:N (2.78574) BS01 rna ? GO:0002181 ... G1T0C1 38896445
    573242 8rjd:N (2.78574) BS02 rna ? GO:0002181 ... G1T0C1 38896445
    573243 8rjd:O (2.78574) BS01 rna ? GO:0003729 ... A0A0N8ETI8 38896445
    573244 8rjd:P (2.78574) BS01 rna ? GO:0002181 ... G1SCJ6 38896445
    573245 8rjd:P (2.78574) BS02 rna ? GO:0002181 ... G1SCJ6 38896445
    573246 8rjd:Q (2.78574) BS01 rna ? GO:0002181 ... F6QKI9 38896445
    573247 8rjd:R (2.78574) BS01 rna ? GO:0003723 ... G1TYL6 38896445
    573248 8rjd:S (2.78574) BS01 rna ? GO:0003735 ... A0A287APR1 38896445
    573249 8rjd:S (2.78574) BS02 rna ? GO:0003735 ... A0A287APR1 38896445
    573250 8rjd:T (2.78574) BS01 rna ? GO:0003735 ... G1SHQ2 38896445
    573251 8rjd:T (2.78574) BS02 rna ? GO:0003735 ... G1SHQ2 38896445
    573252 8rjd:U (2.78574) BS01 rna ? GO:0002181 ... Q4R5I3 38896445
    573253 8rjd:V (2.78574) BS01 rna ? GO:0000122 ... G1T6D1 38896445
    573254 8rjd:W (2.78574) BS01 rna ? GO:0000027 ... G1SE28 38896445
    573255 8rjd:X (2.78574) BS01 rna ? GO:0000027 ... G1SE76 38896445
    573256 8rjd:X (2.78574) BS02 rna ? GO:0000027 ... G1SE76 38896445
    573257 8rjd:Y (2.78574) BS01 rna ? GO:0002181 ... G1SQH0 38896445
    573258 8rjd:Y (2.78574) BS02 rna ? GO:0002181 ... G1SQH0 38896445
    573259 8rjd:Z (2.78574) BS01 rna ? GO:0003735 ... G1TXF6 38896445
    573260 8rjd:a (2.78574) BS01 rna ? GO:0003735 ... G1SNY0 38896445
    573261 8rjd:b (2.78574) BS01 rna ? GO:0002181 ... G1SGR6 38896445
    573262 8rjd:c (2.78574) BS01 rna ? GO:0002181 ... G1TDL2 38896445
    573263 8rjd:d (2.78574) BS01 rna ? GO:0002181 ... G1SHG0 38896445
    573264 8rjd:e (2.78574) BS01 rna ? GO:0003735 ... G1TUN8 38896445
    573265 8rjd:f (2.78574) BS01 rna ? GO:0000049 ... G1SF08 38896445
    573266 8rjd:g (2.78574) BS01 rna ? GO:0003735 ... G1TXG5 38896445
    573267 8rjd:g (2.78574) BS02 MG ? GO:0003735 ... G1TXG5 38896445
    573268 8rjd:g (2.78574) BS03 ZN ? GO:0003735 ... G1TXG5 38896445
    573269 8rjd:h (2.78574) BS01 rna ? GO:0000463 ... G1SIT5 38896445
    573270 8rjd:h (2.78574) BS02 rna ? GO:0000463 ... G1SIT5 38896445
    573271 8rjd:i (2.78574) BS01 rna ? GO:0002181 ... G1TTQ5 38896445
    573272 8rjd:j (2.78574) BS01 rna ? GO:0003723 ... U3KPD5 38896445
    573273 8rjd:j (2.78574) BS02 rna ? GO:0003723 ... U3KPD5 38896445
    573274 8rjd:j (2.78574) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    573275 8rjd:k (2.78574) BS01 rna ? GO:0003735 ... G1U001 38896445
    573276 8rjd:l (2.78574) BS01 rna ? GO:0003735 ... G1TTN1 38896445
    573277 8rjd:l (2.78574) BS02 rna ? GO:0003735 ... G1TTN1 38896445
    573278 8rjd:m (2.78574) BS01 rna N/A GO:0003735 ... N/A 38896445
    573279 8rjd:m (2.78574) BS02 ZN N/A GO:0003735 ... N/A 38896445
    573280 8rjd:o (2.78574) BS01 rna ? GO:0003735 ... G1T040 38896445
    573281 8rjd:o (2.78574) BS02 ZN ? GO:0003735 ... G1T040 38896445
    573282 8rjd:p (2.78574) BS01 rna ? GO:0003735 ... G1SY53 38896445
    573283 8rjd:p (2.78574) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    573284 8rjd:r (2.78574) BS01 rna ? GO:0003735 ... G1U7L1 38896445
    573285 8rjd:w (2.78574) BS01 rna ? GO:0003723 ... G1TL06 38896445
    573286 8rjw:B (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    573287 8rjw:C (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    573288 8rjw:D (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    573289 8rjw:E (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    573290 8rjw:F (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    573291 8rjw:G (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    573292 8rk1:A (2.095) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    573293 8rkq:A (2.6) BS01 9SZ 1.2.1.88 GO:0003842 ... P30038 38675584
    573294 8rkq:D (2.6) BS01 9SZ 1.2.1.88 GO:0003842 ... P30038 38675584
    573295 8rkr:A (1.2) BS01 A1H1O 1.2.1.88 GO:0003842 ... P30038 38675584
    573296 8rks:A (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    573297 8rks:C (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    573298 8rks:E (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    573299 8rks:G (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    573300 8rkt:B (2.35) BS01 rna N/A GO:0005737 ... A0A139X9A4 38834066
    573301 8rln:A (2.43) BS01 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    573302 8rln:A (2.43) BS02 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    573303 8rln:A (2.43) BS03 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    573304 8rln:A (2.43) BS04 A1H1S N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    573305 8rm5:21 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    573306 8rm5:22 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    573307 8rm5:23 (6.9) BS01 rna ? GO:0000243 ... P62318 38778104
    573308 8rm5:2B (6.9) BS01 rna ? GO:0000398 ... P08579 38778104
    573309 8rm5:2b (6.9) BS01 rna ? GO:0000387 ... P14678 38778104
    573310 8rm5:2e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    573311 8rm5:2f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    573312 8rm5:2g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    573313 8rm5:41 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    573314 8rm5:42 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    573315 8rm5:43 (6.9) BS01 rna ? GO:0000243 ... P62318 38778104
    573316 8rm5:4e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    573317 8rm5:4f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    573318 8rm5:4g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    573319 8rm5:51 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    573320 8rm5:52 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    573321 8rm5:5b (6.9) BS01 rna ? GO:0000387 ... P14678 38778104
    573322 8rm5:5e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    573323 8rm5:5f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    573324 8rm5:5g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    573325 8rm5:63 (6.9) BS01 rna ? GO:0000398 ... P62310 38778104
    573326 8rm5:68 (6.9) BS01 rna ? GO:0000398 ... O95777 38778104
    573327 8rm5:7 (6.9) BS01 rna ? GO:0000389 ... Q15459 38778104
    573328 8rm5:8 (6.9) BS01 rna ? GO:0000245 ... Q15428 38778104
    573329 8rm5:9 (6.9) BS01 rna ? GO:0000375 ... Q12874 38778104
    573330 8rm5:A (6.9) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    573331 8rm5:A (6.9) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    573332 8rm5:A (6.9) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    573333 8rm5:B1 (6.9) BS01 rna ? GO:0000245 ... O75533 38778104
    573334 8rm5:B1 (6.9) BS02 rna ? GO:0000245 ... O75533 38778104
    573335 8rm5:B6 (6.9) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    573336 8rm5:D (6.9) BS01 rna ? GO:0000245 ... P83876 38778104
    573337 8rm5:E (6.9) BS01 rna ? GO:0000375 ... Q96DI7 38778104
    573338 8rm5:F (6.9) BS01 rna ? GO:0000375 ... O43172 38778104
    573339 8rm5:J (6.9) BS01 rna ? GO:0000244 ... O43395 38778104
    573340 8rm5:L (6.9) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    573341 8rm5:L (6.9) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    573342 8rm5:M (6.9) BS01 rna ? GO:0000398 ... P55769 38778104
    573343 8rm5:N (6.9) BS01 rna ? GO:0000244 ... O94906 38778104
    573344 8rng:B (1.45) BS01 MG ? GO:0000139 ... P61769 N/A
    573345 8rox:A (3.3) BS01 A1H17 ? GO:0000209 ... Q66K64 38513086
    573346 8roy:A (3.1) BS01 A1H18 ? GO:0000209 ... Q66K64 38513086
    573347 8rpk:A (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    573348 8rpk:B (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    573349 8rpk:C (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    573350 8rpk:D (2.615) BS01 MG N/A GO:0003987 ... A0A535FEC2 39019872
    573351 8rpl:A (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    573352 8rpl:A (2.37) BS02 MG N/A GO:0003987 ... A0A535FEC2 39019872
    573353 8rpl:B (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    573354 8rpl:B (2.37) BS02 MG N/A GO:0003987 ... A0A535FEC2 39019872
    573355 8rpl:C (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    573356 8rpl:C (2.37) BS02 MG N/A GO:0003987 ... A0A535FEC2 39019872
    573357 8rpl:D (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    573358 8rpy:0 (2.64) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    573359 8rpy:1 (2.64) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    573360 8rpy:2 (2.64) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    573361 8rpy:3 (2.64) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    573362 8rpy:4 (2.64) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    573363 8rpy:6 (2.64) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    573364 8rpy:C (2.64) BS01 rna ? GO:0000027 ... P60422 38730238
    573365 8rpy:D (2.64) BS01 rna ? GO:0000027 ... P60438 38730238
    573366 8rpy:E (2.64) BS01 rna ? GO:0001070 ... P60723 38730238
    573367 8rpy:E (2.64) BS02 peptide ? GO:0001070 ... P60723 38730238
    573368 8rpy:F (2.64) BS01 rna ? GO:0000027 ... P62399 38730238
    573369 8rpy:F (2.64) BS02 rna ? GO:0000027 ... P62399 38730238
    573370 8rpy:G (2.64) BS01 rna ? GO:0000027 ... P0AG55 38730238
    573371 8rpy:H (2.64) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    573372 8rpy:J (2.64) BS01 rna ? GO:0002181 ... P0AA10 38730238
    573373 8rpy:K (2.64) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    573374 8rpy:L (2.64) BS01 rna ? GO:0002181 ... P02413 38730238
    573375 8rpy:M (2.64) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    573376 8rpy:M (2.64) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    573377 8rpy:N (2.64) BS01 rna ? GO:0000027 ... P0AG44 38730238
    573378 8rpy:O (2.64) BS01 rna ? GO:0002181 ... P0C018 38730238
    573379 8rpy:O (2.64) BS02 rna ? GO:0002181 ... P0C018 38730238
    573380 8rpy:P (2.64) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    573381 8rpy:Q (2.64) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    573382 8rpy:R (2.64) BS01 rna ? GO:0002181 ... P0AG48 38730238
    573383 8rpy:S (2.64) BS01 rna ? GO:0002181 ... P61175 38730238
    573384 8rpy:T (2.64) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    573385 8rpy:U (2.64) BS01 rna ? GO:0000027 ... P60624 38730238
    573386 8rpy:V (2.64) BS01 rna ? GO:0000027 ... P68919 38730238
    573387 8rpy:V (2.64) BS02 rna ? GO:0000027 ... P68919 38730238
    573388 8rpy:X (2.64) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    573389 8rpy:Y (2.64) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    573390 8rpy:Z (2.64) BS01 rna ? GO:0000027 ... P0AG51 38730238
    573391 8rpz:0 (2.44) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    573392 8rpz:1 (2.44) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    573393 8rpz:2 (2.44) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    573394 8rpz:3 (2.44) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    573395 8rpz:4 (2.44) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    573396 8rpz:6 (2.44) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    573397 8rpz:C (2.44) BS01 rna ? GO:0000027 ... P60422 38730238
    573398 8rpz:D (2.44) BS01 rna ? GO:0000027 ... P60438 38730238
    573399 8rpz:E (2.44) BS01 rna ? GO:0001070 ... P60723 38730238
    573400 8rpz:E (2.44) BS02 peptide ? GO:0001070 ... P60723 38730238
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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