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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    573001 8rhk:K (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    573002 8rhk:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    573003 8rhk:L (2.8) BS01 peptide ? GO:0000502 ... P23724 38628795
    573004 8rhk:N (2.8) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 38628795
    573005 8rhk:N (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P38624 38628795
    573006 8rhk:V (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    573007 8rhk:V (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P25043 38628795
    573008 8rhk:W (2.8) BS01 peptide ? GO:0000502 ... P25451 38628795
    573009 8rhk:Y (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    573010 8rhk:Y (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    573011 8rhk:Z (2.8) BS01 peptide ? GO:0000502 ... P23724 38628795
    573012 8rhk:b (2.8) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 38628795
    573013 8rhl:G (3.2) BS01 MG ? GO:0000502 ... P21243 38628795
    573014 8rhl:H (3.2) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    573015 8rhl:I (3.2) BS01 MG ? GO:0000502 ... P25451 38628795
    573016 8rhl:K (3.2) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    573017 8rhl:K (3.2) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    573018 8rhl:L (3.2) BS01 peptide ? GO:0000502 ... P23724 38628795
    573019 8rhl:N (3.2) BS01 MG 3.4.25.1 GO:0000502 ... P38624 38628795
    573020 8rhl:V (3.2) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    573021 8rhl:V (3.2) BS02 MG 3.4.25.1 GO:0004298 ... P25043 38628795
    573022 8rhl:Y (3.2) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    573023 8rhl:Y (3.2) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    573024 8rhl:Z (3.2) BS01 peptide ? GO:0000502 ... P23724 38628795
    573025 8rhl:Z (3.2) BS02 MG ? GO:0000502 ... P23724 38628795
    573026 8rhq:D (2.0) BS01 MG ? GO:0000139 ... P61769 38742159
    573027 8rhr:A (1.42) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 38574272
    573028 8rhr:A (1.42) BS02 BB4 3.5.1.88 GO:0005515 ... P0A6K3 38574272
    573029 8rhz:C (3.37) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    573030 8rhz:C (3.37) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    573031 8rhz:C (3.37) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    573032 8rhz:D (3.37) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    573033 8rhz:D (3.37) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    573034 8rhz:D (3.37) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38605244
    573035 8rih:A (2.74) BS01 CA N/A GO:0005634 ... Q04179 39000137
    573036 8rih:B (2.74) BS01 CA N/A GO:0005634 ... Q04179 39000137
    573037 8rij:A (1.96) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 38348661
    573038 8rij:A (1.96) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 38348661
    573039 8rij:A (1.96) BS03 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    573040 8rij:A (1.96) BS04 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    573041 8rij:A (1.96) BS05 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    573042 8rij:A (1.96) BS06 A1H07 3.4.24.65 GO:0004222 ... P39900 38348661
    573043 8riv:A (2.78) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    573044 8riv:A (2.78) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    573045 8riv:A (2.78) BS03 A1H01 3.6.5.- GO:0000226 ... P81947 38487227
    573046 8riv:B (2.78) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    573047 8riv:B (2.78) BS02 A1H01 ? GO:0000226 ... Q6B856 38487227
    573048 8riv:C (2.78) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    573049 8riv:C (2.78) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    573050 8riv:D (2.78) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    573051 8riv:D (2.78) BS02 A1H01 ? GO:0000226 ... Q6B856 38487227
    573052 8riw:A (2.57) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    573053 8riw:A (2.57) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    573054 8riw:B (2.57) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    573055 8riw:B (2.57) BS02 A1H00 ? GO:0000226 ... Q6B856 38487227
    573056 8riw:C (2.57) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    573057 8riw:C (2.57) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    573058 8riw:D (2.57) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    573059 8riw:D (2.57) BS02 A1H00 ? GO:0000226 ... Q6B856 38487227
    573060 8riy:AAA (2.288) BS01 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    573061 8riy:AAA (2.288) BS02 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    573062 8riy:BBB (2.288) BS01 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    573063 8riy:BBB (2.288) BS02 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    573064 8rj4:A (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    573065 8rj4:A (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    573066 8rj4:B (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    573067 8rj4:B (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    573068 8rj4:C (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    573069 8rj4:C (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    573070 8rj4:D (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    573071 8rj4:D (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    573072 8rj6:A (1.9) BS01 ATP N/A GO:0000287 ... P69441 39121211
    573073 8rj6:A (1.9) BS02 ADP N/A GO:0000287 ... P69441 39121211
    573074 8rj6:A (1.9) BS03 AMP N/A GO:0000287 ... P69441 39121211
    573075 8rj6:B (1.9) BS01 ADP N/A GO:0000287 ... P69441 39121211
    573076 8rj6:B (1.9) BS02 AMP N/A GO:0000287 ... P69441 39121211
    573077 8rj9:A (1.59) BS01 ADP N/A GO:0000287 ... P69441 39121211
    573078 8rj9:A (1.59) BS02 ADP N/A GO:0000287 ... P69441 39121211
    573079 8rj9:B (1.59) BS01 ADP N/A GO:0000287 ... P69441 39121211
    573080 8rj9:B (1.59) BS02 ADP N/A GO:0000287 ... P69441 39121211
    573081 8rjb:1 (2.69243) BS01 rna ? GO:0005048 ... P38377 38896445
    573082 8rjb:4 (2.69243) BS01 rna ? GO:0001501 ... A0A8C0RGL8 38896445
    573083 8rjb:A (2.69243) BS01 rna ? GO:0002181 ... G1TT27 38896445
    573084 8rjb:C (2.69243) BS01 peptide ? GO:0003723 ... A0A5F9C3C5 38896445
    573085 8rjb:C (2.69243) BS02 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    573086 8rjb:C (2.69243) BS03 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    573087 8rjb:D (2.69243) BS01 rna ? GO:0000027 ... P19949 38896445
    573088 8rjb:D (2.69243) BS02 rna ? GO:0000027 ... P19949 38896445
    573089 8rjb:E (2.69243) BS01 rna ? GO:0000027 ... G1SKF7 38896445
    573090 8rjb:F (2.69243) BS01 rna ? GO:0000463 ... G1TUB1 38896445
    573091 8rjb:F (2.69243) BS02 rna ? GO:0000463 ... G1TUB1 38896445
    573092 8rjb:G (2.69243) BS01 rna ? GO:0000470 ... G1STW0 38896445
    573093 8rjb:G (2.69243) BS02 rna ? GO:0000470 ... G1STW0 38896445
    573094 8rjb:H (2.69243) BS01 rna ? GO:0002181 ... G1SWI6 38896445
    573095 8rjb:I (2.69243) BS01 rna ? GO:0000027 ... B7NZQ2 38896445
    573096 8rjb:I (2.69243) BS02 rna ? GO:0000027 ... B7NZQ2 38896445
    573097 8rjb:J (2.69243) BS01 rna ? GO:0003723 ... G1TUB8 38896445
    573098 8rjb:J (2.69243) BS02 rna ? GO:0003723 ... G1TUB8 38896445
    573099 8rjb:J (2.69243) BS03 rna ? GO:0003723 ... G1TUB8 38896445
    573100 8rjb:L (2.69243) BS01 rna ? GO:0003735 ... G1TPV0 38896445
    573101 8rjb:L (2.69243) BS02 rna ? GO:0003735 ... G1TPV0 38896445
    573102 8rjb:M (2.69243) BS01 rna ? GO:0003723 ... G1SZ12 38896445
    573103 8rjb:N (2.69243) BS01 rna ? GO:0002181 ... G1T0C1 38896445
    573104 8rjb:N (2.69243) BS02 rna ? GO:0002181 ... G1T0C1 38896445
    573105 8rjb:O (2.69243) BS01 rna N/A GO:0003735 ... N/A 38896445
    573106 8rjb:P (2.69243) BS01 rna ? GO:0002181 ... G1SCJ6 38896445
    573107 8rjb:P (2.69243) BS02 rna ? GO:0002181 ... G1SCJ6 38896445
    573108 8rjb:Q (2.69243) BS01 rna N/A GO:0003735 ... N/A 38896445
    573109 8rjb:R (2.69243) BS01 rna ? GO:0003723 ... G1TJR3 38896445
    573110 8rjb:S (2.69243) BS01 rna ? GO:0003735 ... A0A287APR1 38896445
    573111 8rjb:S (2.69243) BS02 rna ? GO:0003735 ... A0A287APR1 38896445
    573112 8rjb:T (2.69243) BS01 rna ? GO:0003735 ... G1SHQ2 38896445
    573113 8rjb:T (2.69243) BS02 rna ? GO:0003735 ... G1SHQ2 38896445
    573114 8rjb:U (2.69243) BS01 rna ? GO:0002181 ... G1TSG1 38896445
    573115 8rjb:V (2.69243) BS01 rna ? GO:0000122 ... G1T6D1 38896445
    573116 8rjb:W (2.69243) BS01 rna ? GO:0000027 ... G1SE28 38896445
    573117 8rjb:X (2.69243) BS01 rna ? GO:0000027 ... G1SE76 38896445
    573118 8rjb:X (2.69243) BS02 rna ? GO:0000027 ... G1SE76 38896445
    573119 8rjb:Y (2.69243) BS01 rna ? GO:0002181 ... G1SQH0 38896445
    573120 8rjb:Y (2.69243) BS02 rna ? GO:0002181 ... G1SQH0 38896445
    573121 8rjb:Z (2.69243) BS01 rna ? GO:0003735 ... G1TXF6 38896445
    573122 8rjb:a (2.69243) BS01 rna ? GO:0003735 ... G1SNY0 38896445
    573123 8rjb:b (2.69243) BS01 rna ? GO:0002181 ... G1SGR6 38896445
    573124 8rjb:c (2.69243) BS01 rna ? GO:0002181 ... G1TDL2 38896445
    573125 8rjb:d (2.69243) BS01 rna ? GO:0002181 ... G1SHG0 38896445
    573126 8rjb:e (2.69243) BS01 rna ? GO:0003735 ... G1TUN8 38896445
    573127 8rjb:f (2.69243) BS01 rna ? GO:0000049 ... G1SF08 38896445
    573128 8rjb:g (2.69243) BS01 rna ? GO:0003735 ... G1TXG5 38896445
    573129 8rjb:g (2.69243) BS02 ZN ? GO:0003735 ... G1TXG5 38896445
    573130 8rjb:g (2.69243) BS03 MG ? GO:0003735 ... G1TXG5 38896445
    573131 8rjb:h (2.69243) BS01 rna ? GO:0000463 ... G1SIT5 38896445
    573132 8rjb:h (2.69243) BS02 rna ? GO:0000463 ... G1SIT5 38896445
    573133 8rjb:i (2.69243) BS01 rna ? GO:0002181 ... G1TTQ5 38896445
    573134 8rjb:j (2.69243) BS01 rna ? GO:0003723 ... U3KPD5 38896445
    573135 8rjb:j (2.69243) BS02 rna ? GO:0003723 ... U3KPD5 38896445
    573136 8rjb:j (2.69243) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    573137 8rjb:k (2.69243) BS01 rna ? GO:0003735 ... G1U001 38896445
    573138 8rjb:l (2.69243) BS01 peptide ? GO:0003735 ... G1TTN1 38896445
    573139 8rjb:l (2.69243) BS02 rna ? GO:0003735 ... G1TTN1 38896445
    573140 8rjb:l (2.69243) BS03 rna ? GO:0003735 ... G1TTN1 38896445
    573141 8rjb:m (2.69243) BS01 rna N/A GO:0003735 ... N/A 38896445
    573142 8rjb:m (2.69243) BS02 ZN N/A GO:0003735 ... N/A 38896445
    573143 8rjb:o (2.69243) BS01 rna ? GO:0003735 ... G1T040 38896445
    573144 8rjb:o (2.69243) BS02 ZN ? GO:0003735 ... G1T040 38896445
    573145 8rjb:p (2.69243) BS01 rna ? GO:0003735 ... G1SY53 38896445
    573146 8rjb:p (2.69243) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    573147 8rjb:r (2.69243) BS01 rna ? GO:0003735 ... G1U7L1 38896445
    573148 8rjb:w (2.69243) BS01 rna ? GO:0003723 ... G1TL06 38896445
    573149 8rjc:1 (2.90061) BS01 rna ? GO:0005048 ... P38377 38896445
    573150 8rjc:4 (2.90061) BS01 rna ? GO:0001501 ... A0A8C0RGL8 38896445
    573151 8rjc:5 (2.90061) BS01 rna ? GO:0005789 ... P16967 38896445
    573152 8rjc:7 (2.90061) BS01 rna ? GO:0005783 ... A0A8C0T6I4 38896445
    573153 8rjc:A (2.90061) BS01 rna ? GO:0002181 ... G1TT27 38896445
    573154 8rjc:B (2.90061) BS01 rna N/A GO:0003779 ... N/A 38896445
    573155 8rjc:C (2.90061) BS01 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    573156 8rjc:C (2.90061) BS02 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    573157 8rjc:D (2.90061) BS01 rna ? GO:0000027 ... P19949 38896445
    573158 8rjc:D (2.90061) BS02 rna ? GO:0000027 ... P19949 38896445
    573159 8rjc:E (2.90061) BS01 rna ? GO:0000027 ... G1SKF7 38896445
    573160 8rjc:F (2.90061) BS01 rna ? GO:0000463 ... G1TUB1 38896445
    573161 8rjc:F (2.90061) BS02 rna ? GO:0000463 ... G1TUB1 38896445
    573162 8rjc:G (2.90061) BS01 rna ? GO:0000470 ... G1STW0 38896445
    573163 8rjc:G (2.90061) BS02 rna ? GO:0000470 ... G1STW0 38896445
    573164 8rjc:H (2.90061) BS01 rna ? GO:0002181 ... G1SWI6 38896445
    573165 8rjc:I (2.90061) BS01 rna ? GO:0000027 ... B7NZQ2 38896445
    573166 8rjc:I (2.90061) BS02 rna ? GO:0000027 ... B7NZQ2 38896445
    573167 8rjc:J (2.90061) BS01 rna ? GO:0003723 ... G1TUB8 38896445
    573168 8rjc:J (2.90061) BS02 rna ? GO:0003723 ... G1TUB8 38896445
    573169 8rjc:L (2.90061) BS01 rna ? GO:0003723 ... G1TKB3 38896445
    573170 8rjc:L (2.90061) BS02 rna ? GO:0003723 ... G1TKB3 38896445
    573171 8rjc:M (2.90061) BS01 rna ? GO:0003723 ... G1SZ12 38896445
    573172 8rjc:N (2.90061) BS01 rna ? GO:0002181 ... G1T0C1 38896445
    573173 8rjc:N (2.90061) BS02 rna ? GO:0002181 ... G1T0C1 38896445
    573174 8rjc:O (2.90061) BS01 rna N/A GO:0003735 ... N/A 38896445
    573175 8rjc:P (2.90061) BS01 rna ? GO:0002181 ... G1SCJ6 38896445
    573176 8rjc:P (2.90061) BS02 rna ? GO:0002181 ... G1SCJ6 38896445
    573177 8rjc:Q (2.90061) BS01 rna ? GO:0002181 ... G1TFE0 38896445
    573178 8rjc:R (2.90061) BS01 rna ? GO:0003723 ... G1TJR3 38896445
    573179 8rjc:S (2.90061) BS01 rna ? GO:0003735 ... A0A287APR1 38896445
    573180 8rjc:S (2.90061) BS02 rna ? GO:0003735 ... A0A287APR1 38896445
    573181 8rjc:T (2.90061) BS01 rna ? GO:0003735 ... G1SHQ2 38896445
    573182 8rjc:T (2.90061) BS02 rna ? GO:0003735 ... G1SHQ2 38896445
    573183 8rjc:U (2.90061) BS01 rna ? GO:0002181 ... G1TSG1 38896445
    573184 8rjc:V (2.90061) BS01 rna ? GO:0000122 ... G1T6D1 38896445
    573185 8rjc:W (2.90061) BS01 rna ? GO:0000027 ... G1SE28 38896445
    573186 8rjc:X (2.90061) BS01 rna ? GO:0000027 ... G1SE76 38896445
    573187 8rjc:X (2.90061) BS02 rna ? GO:0000027 ... G1SE76 38896445
    573188 8rjc:Y (2.90061) BS01 rna ? GO:0002181 ... G1SQH0 38896445
    573189 8rjc:Y (2.90061) BS02 rna ? GO:0002181 ... G1SQH0 38896445
    573190 8rjc:Z (2.90061) BS01 rna ? GO:0003735 ... G1TXF6 38896445
    573191 8rjc:a (2.90061) BS01 rna ? GO:0003735 ... G1SNY0 38896445
    573192 8rjc:b (2.90061) BS01 rna ? GO:0002181 ... G1SGR6 38896445
    573193 8rjc:c (2.90061) BS01 rna ? GO:0002181 ... G1TDL2 38896445
    573194 8rjc:d (2.90061) BS01 rna ? GO:0002181 ... G1SHG0 38896445
    573195 8rjc:e (2.90061) BS01 rna ? GO:0003735 ... G1TUN8 38896445
    573196 8rjc:f (2.90061) BS01 rna ? GO:0000049 ... G1SF08 38896445
    573197 8rjc:g (2.90061) BS01 rna ? GO:0003735 ... G1TXG5 38896445
    573198 8rjc:g (2.90061) BS02 MG ? GO:0003735 ... G1TXG5 38896445
    573199 8rjc:g (2.90061) BS03 ZN ? GO:0003735 ... G1TXG5 38896445
    573200 8rjc:h (2.90061) BS01 rna ? GO:0000463 ... G1SIT5 38896445
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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