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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    572401 8rcs:O2 (4.46) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    572402 8rcs:O2 (4.46) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    572403 8rcs:P1 (4.46) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    572404 8rcs:Q1 (4.46) BS01 rna ? GO:0000028 ... P0AG63 38409277
    572405 8rcs:Q2 (4.46) BS01 rna ? GO:0000028 ... P0AG63 38409277
    572406 8rcs:R1 (4.46) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    572407 8rcs:R2 (4.46) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    572408 8rcs:S1 (4.46) BS01 peptide ? GO:0000028 ... P0A7U3 38409277
    572409 8rcs:S1 (4.46) BS02 rna ? GO:0000028 ... P0A7U3 38409277
    572410 8rcs:S2 (4.46) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    572411 8rcs:T1 (4.46) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    572412 8rcs:U1 (4.46) BS01 rna ? GO:0000028 ... P68679 38409277
    572413 8rcs:U1 (4.46) BS02 rna ? GO:0000028 ... P68679 38409277
    572414 8rcs:U2 (4.46) BS01 rna ? GO:0000028 ... P68679 38409277
    572415 8rcs:U2 (4.46) BS02 rna ? GO:0000028 ... P68679 38409277
    572416 8rcs:a2 (4.46) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    572417 8rcs:b2 (4.46) BS01 rna ? GO:0000027 ... P60422 38409277
    572418 8rcs:b2 (4.46) BS02 rna ? GO:0000027 ... P60422 38409277
    572419 8rcs:e2 (4.46) BS01 rna ? GO:0000027 ... P62399 38409277
    572420 8rcs:e2 (4.46) BS02 rna ? GO:0000027 ... P62399 38409277
    572421 8rcs:g2 (4.46) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    572422 8rcs:h2 (4.46) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    572423 8rcs:h2 (4.46) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    572424 8rcs:i2 (4.46) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    572425 8rcs:i2 (4.46) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    572426 8rcs:l2 (4.46) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    572427 8rcs:o2 (4.46) BS01 rna ? GO:0002181 ... P02413 38409277
    572428 8rcs:o2 (4.46) BS02 MG ? GO:0002181 ... P02413 38409277
    572429 8rcs:r2 (4.46) BS01 rna ? GO:0002181 ... P0C018 38409277
    572430 8rcs:r2 (4.46) BS02 rna ? GO:0002181 ... P0C018 38409277
    572431 8rcs:z2 (4.46) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    572432 8rcs:z2 (4.46) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    572433 8rct:12 (5.32) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    572434 8rct:12 (5.32) BS02 rna ? GO:0000027 ... P0A7M2 38409277
    572435 8rct:32 (5.32) BS01 rna ? GO:0000027 ... P0AG51 38409277
    572436 8rct:32 (5.32) BS02 rna ? GO:0000027 ... P0AG51 38409277
    572437 8rct:4 (5.32) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    572438 8rct:4 (5.32) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    572439 8rct:4 (5.32) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    572440 8rct:62 (5.32) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    572441 8rct:B (5.32) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    572442 8rct:B (5.32) BS02 peptide ? GO:0000028 ... P0A7V0 38409277
    572443 8rct:B (5.32) BS03 ZN ? GO:0000028 ... P0A7V0 38409277
    572444 8rct:B2 (5.32) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    572445 8rct:C1 (5.32) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    572446 8rct:C1 (5.32) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    572447 8rct:C2 (5.32) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    572448 8rct:D1 (5.32) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    572449 8rct:D2 (5.32) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    572450 8rct:E1 (5.32) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    572451 8rct:E1 (5.32) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    572452 8rct:E2 (5.32) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    572453 8rct:E2 (5.32) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    572454 8rct:F1 (5.32) BS01 rna ? GO:0002181 ... P02358 38409277
    572455 8rct:F2 (5.32) BS01 rna ? GO:0002181 ... P02358 38409277
    572456 8rct:G1 (5.32) BS01 rna ? GO:0000028 ... P02359 38409277
    572457 8rct:G2 (5.32) BS01 rna ? GO:0000028 ... P02359 38409277
    572458 8rct:G2 (5.32) BS02 rna ? GO:0000028 ... P02359 38409277
    572459 8rct:H1 (5.32) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    572460 8rct:H2 (5.32) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    572461 8rct:I1 (5.32) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    572462 8rct:I2 (5.32) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    572463 8rct:I2 (5.32) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    572464 8rct:J1 (5.32) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    572465 8rct:J2 (5.32) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    572466 8rct:K1 (5.32) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    572467 8rct:K2 (5.32) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    572468 8rct:L1 (5.32) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    572469 8rct:L2 (5.32) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    572470 8rct:M1 (5.32) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    572471 8rct:M2 (5.32) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    572472 8rct:N1 (5.32) BS01 peptide ? GO:0000028 ... P0AG59 38409277
    572473 8rct:N1 (5.32) BS02 rna ? GO:0000028 ... P0AG59 38409277
    572474 8rct:N2 (5.32) BS01 rna ? GO:0000028 ... P0AG59 38409277
    572475 8rct:O1 (5.32) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    572476 8rct:O2 (5.32) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    572477 8rct:O2 (5.32) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    572478 8rct:P1 (5.32) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    572479 8rct:Q1 (5.32) BS01 rna ? GO:0000028 ... P0AG63 38409277
    572480 8rct:Q2 (5.32) BS01 rna ? GO:0000028 ... P0AG63 38409277
    572481 8rct:R1 (5.32) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    572482 8rct:R2 (5.32) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    572483 8rct:S1 (5.32) BS01 peptide ? GO:0000028 ... P0A7U3 38409277
    572484 8rct:S1 (5.32) BS02 rna ? GO:0000028 ... P0A7U3 38409277
    572485 8rct:S2 (5.32) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    572486 8rct:T1 (5.32) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    572487 8rct:U1 (5.32) BS01 rna ? GO:0000028 ... P68679 38409277
    572488 8rct:U1 (5.32) BS02 rna ? GO:0000028 ... P68679 38409277
    572489 8rct:U2 (5.32) BS01 rna ? GO:0000028 ... P68679 38409277
    572490 8rct:U2 (5.32) BS02 rna ? GO:0000028 ... P68679 38409277
    572491 8rct:a2 (5.32) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    572492 8rct:b2 (5.32) BS01 rna ? GO:0000027 ... P60422 38409277
    572493 8rct:b2 (5.32) BS02 rna ? GO:0000027 ... P60422 38409277
    572494 8rct:e2 (5.32) BS01 rna ? GO:0000027 ... P62399 38409277
    572495 8rct:e2 (5.32) BS02 rna ? GO:0000027 ... P62399 38409277
    572496 8rct:g2 (5.32) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    572497 8rct:h2 (5.32) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    572498 8rct:h2 (5.32) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    572499 8rct:i2 (5.32) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    572500 8rct:i2 (5.32) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    572501 8rct:l2 (5.32) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    572502 8rct:o2 (5.32) BS01 rna ? GO:0002181 ... P02413 38409277
    572503 8rct:o2 (5.32) BS02 MG ? GO:0002181 ... P02413 38409277
    572504 8rct:r2 (5.32) BS01 rna ? GO:0002181 ... P0C018 38409277
    572505 8rct:r2 (5.32) BS02 rna ? GO:0002181 ... P0C018 38409277
    572506 8rct:z2 (5.32) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    572507 8rct:z2 (5.32) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    572508 8rd8:A4 (2.62) BS01 rna ? GO:0003735 ... A0A0M4TFJ4 38355796
    572509 8rd8:Af (2.62) BS01 rna ? GO:0003735 ... A0A0M4T1M3 38355796
    572510 8rd8:BQ (2.62) BS01 rna ? GO:0003735 ... A0A0M4U618 38355796
    572511 8rd8:Ba (2.62) BS01 rna ? GO:0003735 ... A0A0M4TEZ6 38355796
    572512 8rd8:C1 (2.62) BS01 rna ? GO:0003735 ... A0A0M3V9E8 38355796
    572513 8rd8:CT (2.62) BS01 rna ? GO:0003676 ... A0A0M4T6V9 38355796
    572514 8rd8:Cl (2.62) BS01 rna ? GO:0002181 ... A0A0M3V8Q0 38355796
    572515 8rd8:D (2.62) BS01 rna ? GO:0005840 ... A0A0M4TFB0 38355796
    572516 8rd8:Dm (2.62) BS01 rna ? GO:0003723 ... A0A0M4TE52 38355796
    572517 8rd8:E5 (2.62) BS01 rna ? GO:0003723 ... A0A0M3V8J0 38355796
    572518 8rd8:E9 (2.62) BS01 rna ? GO:0003735 ... A0A0M4U627 38355796
    572519 8rd8:F (2.62) BS01 rna ? GO:0003723 ... A0A0M4T6M9 38355796
    572520 8rd8:F7 (2.62) BS01 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    572521 8rd8:F7 (2.62) BS02 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    572522 8rd8:FG (2.62) BS01 rna ? GO:0003735 ... A0A0M4U628 38355796
    572523 8rd8:GR (2.62) BS01 rna ? GO:0002181 ... A0A0M5MKV2 38355796
    572524 8rd8:GS (2.62) BS01 rna ? GO:0000028 ... A0A0M3V8N5 38355796
    572525 8rd8:H (2.62) BS01 rna ? GO:0003746 ... A0A0M4U5B4 38355796
    572526 8rd8:HK (2.62) BS01 rna ? GO:0003735 ... A0A0M3V8P8 38355796
    572527 8rd8:IX (2.62) BS01 rna ? GO:0003729 ... A0A0M4TBP4 38355796
    572528 8rd8:JY (2.62) BS01 rna ? GO:0000049 ... A0A0M4TE68 38355796
    572529 8rd8:Je (2.62) BS01 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    572530 8rd8:Je (2.62) BS02 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    572531 8rd8:KU (2.62) BS01 rna ? GO:0003735 ... A0A0M3V8P6 38355796
    572532 8rd8:Kd (2.62) BS01 rna ? GO:0003735 ... A0A0M4T6V1 38355796
    572533 8rd8:L6 (2.62) BS01 rna ? GO:0000049 ... A0A0M4U4C3 38355796
    572534 8rd8:Lg (2.62) BS01 rna ? GO:0000049 ... A0A0M3V8J3 38355796
    572535 8rd8:MB (2.62) BS01 rna ? GO:0003735 ... A0A0M4U611 38355796
    572536 8rd8:MM (2.62) BS01 rna ? GO:0000049 ... A0A0M5MJL8 38355796
    572537 8rd8:NV (2.62) BS01 rna ? GO:0003735 ... A0A0M4SY21 38355796
    572538 8rd8:Nc (2.62) BS01 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    572539 8rd8:Nc (2.62) BS02 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    572540 8rd8:OL (2.62) BS01 rna ? GO:0003735 ... A0A0M4TF29 38355796
    572541 8rd8:OL (2.62) BS02 rna ? GO:0003735 ... A0A0M4TF29 38355796
    572542 8rd8:Oi (2.62) BS01 rna ? GO:0003735 ... A0A0M4TV08 38355796
    572543 8rd8:Oi (2.62) BS02 rna ? GO:0003735 ... A0A0M4TV08 38355796
    572544 8rd8:PO (2.62) BS01 rna ? GO:0000027 ... A0A0M5MJR6 38355796
    572545 8rd8:Pj (2.62) BS01 rna ? GO:0003735 ... A0A0M4T275 38355796
    572546 8rd8:QZ (2.62) BS01 rna ? GO:0003735 ... A0A0M4U401 38355796
    572547 8rd8:Qb (2.62) BS01 rna ? GO:0003723 ... A0A0M5TIS3 38355796
    572548 8rd8:R3 (2.62) BS01 rna ? GO:0003735 ... A0A0M5MK69 38355796
    572549 8rd8:RF (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWS6 38355796
    572550 8rd8:SP (2.62) BS01 rna ? GO:0000028 ... A0A0M4TUJ8 38355796
    572551 8rd8:Sn (2.62) BS01 rna ? GO:0000027 ... A0A0M5MJH9 38355796
    572552 8rd8:TI (2.62) BS01 rna ? GO:0003723 ... A0A0M4TE60 38355796
    572553 8rd8:To (2.62) BS01 rna ? GO:0003723 ... A0A0M4T3R2 38355796
    572554 8rd8:UC (2.62) BS01 rna ? GO:0003723 ... A0A0M4U726 38355796
    572555 8rd8:UC (2.62) BS02 rna ? GO:0003723 ... A0A0M4U726 38355796
    572556 8rd8:VH (2.62) BS01 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    572557 8rd8:VH (2.62) BS02 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    572558 8rd8:WD (2.62) BS01 rna ? GO:0003735 ... A0A0M4T6Y7 38355796
    572559 8rd8:XE (2.62) BS01 rna ? GO:0003735 ... A0A0M4TBX9 38355796
    572560 8rd8:YW (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    572561 8rd8:YW (2.62) BS02 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    572562 8rd8:aA (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWQ6 38355796
    572563 8rd8:bk (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWV1 38355796
    572564 8rd8:dh (2.62) BS01 rna ? GO:0003735 ... A0A0M4U4I0 38355796
    572565 8rd8:ep (2.62) BS01 rna ? GO:0003735 ... A0A0M4U3Z5 38355796
    572566 8rd8:fJ (2.62) BS01 rna ? GO:0003735 ... A0A0M4SX87 38355796
    572567 8rdj:C (2.62) BS01 dna 2.7.7.6 GO:0000428 ... A0A6C0M5W1 38428394
    572568 8rdj:C (2.62) BS02 dna 2.7.7.6 GO:0000428 ... A0A6C0M5W1 38428394
    572569 8rdj:C (2.62) BS03 rna 2.7.7.6 GO:0000428 ... A0A6C0M5W1 38428394
    572570 8rdj:D (2.62) BS01 dna 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    572571 8rdj:D (2.62) BS02 dna 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    572572 8rdj:D (2.62) BS03 MG 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    572573 8rdj:E (2.62) BS01 dna 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    572574 8rdj:E (2.62) BS02 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    572575 8rdu:B (2.3) BS01 rna N/A GO:0005737 ... A0A139X9A4 38834066
    572576 8rdv:A4 (2.6) BS01 rna ? GO:0003735 ... A0A0M4TFJ4 38355796
    572577 8rdv:Af (2.6) BS01 rna ? GO:0003735 ... A0A0M4T1M3 38355796
    572578 8rdv:BQ (2.6) BS01 rna ? GO:0003735 ... A0A0M4U618 38355796
    572579 8rdv:Ba (2.6) BS01 rna ? GO:0003735 ... A0A0M4TEZ6 38355796
    572580 8rdv:C1 (2.6) BS01 rna ? GO:0003735 ... A0A0M3V9E8 38355796
    572581 8rdv:CT (2.6) BS01 rna ? GO:0003676 ... A0A0M4T6V9 38355796
    572582 8rdv:Cl (2.6) BS01 rna ? GO:0002181 ... A0A0M3V8Q0 38355796
    572583 8rdv:Dm (2.6) BS01 rna ? GO:0003723 ... A0A0M4TE52 38355796
    572584 8rdv:E5 (2.6) BS01 rna ? GO:0003723 ... A0A0M3V8J0 38355796
    572585 8rdv:E9 (2.6) BS01 rna ? GO:0003735 ... A0A0M4U627 38355796
    572586 8rdv:F (2.6) BS01 rna ? GO:0003723 ... A0A0M4T6M9 38355796
    572587 8rdv:F (2.6) BS02 rna ? GO:0003723 ... A0A0M4T6M9 38355796
    572588 8rdv:F7 (2.6) BS01 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    572589 8rdv:F7 (2.6) BS02 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    572590 8rdv:F7 (2.6) BS03 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    572591 8rdv:FG (2.6) BS01 rna ? GO:0003735 ... A0A0M4U628 38355796
    572592 8rdv:GR (2.6) BS01 rna ? GO:0002181 ... A0A0M5MKV2 38355796
    572593 8rdv:GS (2.6) BS01 rna ? GO:0000028 ... A0A0M3V8N5 38355796
    572594 8rdv:HK (2.6) BS01 rna ? GO:0003735 ... A0A0M3V8P8 38355796
    572595 8rdv:IX (2.6) BS01 rna ? GO:0003729 ... A0A0M4TBP4 38355796
    572596 8rdv:JY (2.6) BS01 rna ? GO:0000049 ... A0A0M4TE68 38355796
    572597 8rdv:Je (2.6) BS01 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    572598 8rdv:Je (2.6) BS02 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    572599 8rdv:KU (2.6) BS01 rna ? GO:0003735 ... A0A0M3V8P6 38355796
    572600 8rdv:Kd (2.6) BS01 rna ? GO:0003735 ... A0A0M4T6V1 38355796
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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