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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    572201 8rcc:A (2.301) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    572202 8rcc:A (2.301) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    572203 8rcg:A (2.005) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    572204 8rcg:A (2.005) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    572205 8rcg:A (2.005) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    572206 8rcl:12 (3.49) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    572207 8rcl:32 (3.49) BS01 rna ? GO:0000027 ... P0AG51 38409277
    572208 8rcl:32 (3.49) BS02 rna ? GO:0000027 ... P0AG51 38409277
    572209 8rcl:4 (3.49) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    572210 8rcl:4 (3.49) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    572211 8rcl:4 (3.49) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    572212 8rcl:62 (3.49) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    572213 8rcl:B (3.49) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    572214 8rcl:B (3.49) BS02 peptide ? GO:0000028 ... P0A7V0 38409277
    572215 8rcl:B (3.49) BS03 ZN ? GO:0000028 ... P0A7V0 38409277
    572216 8rcl:B2 (3.49) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    572217 8rcl:C1 (3.49) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    572218 8rcl:C1 (3.49) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    572219 8rcl:C2 (3.49) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    572220 8rcl:C2 (3.49) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    572221 8rcl:D1 (3.49) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    572222 8rcl:D2 (3.49) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    572223 8rcl:E1 (3.49) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    572224 8rcl:E1 (3.49) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    572225 8rcl:E2 (3.49) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    572226 8rcl:E2 (3.49) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    572227 8rcl:F1 (3.49) BS01 rna ? GO:0002181 ... P02358 38409277
    572228 8rcl:F2 (3.49) BS01 rna ? GO:0002181 ... P02358 38409277
    572229 8rcl:G1 (3.49) BS01 rna ? GO:0000028 ... P02359 38409277
    572230 8rcl:G1 (3.49) BS02 rna ? GO:0000028 ... P02359 38409277
    572231 8rcl:G2 (3.49) BS01 rna ? GO:0000028 ... P02359 38409277
    572232 8rcl:G2 (3.49) BS02 rna ? GO:0000028 ... P02359 38409277
    572233 8rcl:G2 (3.49) BS03 rna ? GO:0000028 ... P02359 38409277
    572234 8rcl:H1 (3.49) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    572235 8rcl:H2 (3.49) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    572236 8rcl:I1 (3.49) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    572237 8rcl:I1 (3.49) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    572238 8rcl:I2 (3.49) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    572239 8rcl:I2 (3.49) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    572240 8rcl:J1 (3.49) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    572241 8rcl:J2 (3.49) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    572242 8rcl:K1 (3.49) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    572243 8rcl:K2 (3.49) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    572244 8rcl:L1 (3.49) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    572245 8rcl:L2 (3.49) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    572246 8rcl:M1 (3.49) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    572247 8rcl:M2 (3.49) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    572248 8rcl:M2 (3.49) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    572249 8rcl:N1 (3.49) BS01 rna ? GO:0000028 ... P0AG59 38409277
    572250 8rcl:N2 (3.49) BS01 rna ? GO:0000028 ... P0AG59 38409277
    572251 8rcl:O1 (3.49) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    572252 8rcl:O2 (3.49) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    572253 8rcl:O2 (3.49) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    572254 8rcl:P1 (3.49) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    572255 8rcl:Q1 (3.49) BS01 rna ? GO:0000028 ... P0AG63 38409277
    572256 8rcl:Q2 (3.49) BS01 rna ? GO:0000028 ... P0AG63 38409277
    572257 8rcl:R1 (3.49) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    572258 8rcl:R2 (3.49) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    572259 8rcl:S1 (3.49) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    572260 8rcl:S2 (3.49) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    572261 8rcl:T1 (3.49) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    572262 8rcl:U1 (3.49) BS01 rna ? GO:0000028 ... P68679 38409277
    572263 8rcl:U1 (3.49) BS02 rna ? GO:0000028 ... P68679 38409277
    572264 8rcl:U2 (3.49) BS01 rna ? GO:0000028 ... P68679 38409277
    572265 8rcl:U2 (3.49) BS02 rna ? GO:0000028 ... P68679 38409277
    572266 8rcl:a2 (3.49) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    572267 8rcl:b2 (3.49) BS01 rna ? GO:0000027 ... P60422 38409277
    572268 8rcl:b2 (3.49) BS02 rna ? GO:0000027 ... P60422 38409277
    572269 8rcl:e2 (3.49) BS01 rna ? GO:0000027 ... P62399 38409277
    572270 8rcl:e2 (3.49) BS02 rna ? GO:0000027 ... P62399 38409277
    572271 8rcl:e2 (3.49) BS03 rna ? GO:0000027 ... P62399 38409277
    572272 8rcl:g2 (3.49) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    572273 8rcl:h2 (3.49) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    572274 8rcl:h2 (3.49) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    572275 8rcl:i2 (3.49) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    572276 8rcl:i2 (3.49) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    572277 8rcl:l2 (3.49) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    572278 8rcl:o2 (3.49) BS01 rna ? GO:0002181 ... P02413 38409277
    572279 8rcl:o2 (3.49) BS02 MG ? GO:0002181 ... P02413 38409277
    572280 8rcl:r2 (3.49) BS01 rna ? GO:0002181 ... P0C018 38409277
    572281 8rcl:r2 (3.49) BS02 rna ? GO:0002181 ... P0C018 38409277
    572282 8rcl:z2 (3.49) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    572283 8rcm:12 (3.59) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    572284 8rcm:32 (3.59) BS01 rna ? GO:0000027 ... P0AG51 38409277
    572285 8rcm:32 (3.59) BS02 rna ? GO:0000027 ... P0AG51 38409277
    572286 8rcm:4 (3.59) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    572287 8rcm:4 (3.59) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    572288 8rcm:4 (3.59) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    572289 8rcm:62 (3.59) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    572290 8rcm:B (3.59) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    572291 8rcm:B2 (3.59) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    572292 8rcm:C1 (3.59) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    572293 8rcm:C1 (3.59) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    572294 8rcm:C2 (3.59) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    572295 8rcm:C2 (3.59) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    572296 8rcm:D1 (3.59) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    572297 8rcm:D1 (3.59) BS02 rna ? GO:0000028 ... P0A7V8 38409277
    572298 8rcm:D2 (3.59) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    572299 8rcm:E1 (3.59) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    572300 8rcm:E1 (3.59) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    572301 8rcm:E2 (3.59) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    572302 8rcm:E2 (3.59) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    572303 8rcm:F1 (3.59) BS01 rna ? GO:0002181 ... P02358 38409277
    572304 8rcm:F2 (3.59) BS01 rna ? GO:0002181 ... P02358 38409277
    572305 8rcm:G1 (3.59) BS01 rna ? GO:0000028 ... P02359 38409277
    572306 8rcm:G1 (3.59) BS02 rna ? GO:0000028 ... P02359 38409277
    572307 8rcm:G2 (3.59) BS01 rna ? GO:0000028 ... P02359 38409277
    572308 8rcm:G2 (3.59) BS02 rna ? GO:0000028 ... P02359 38409277
    572309 8rcm:G2 (3.59) BS03 rna ? GO:0000028 ... P02359 38409277
    572310 8rcm:H1 (3.59) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    572311 8rcm:H2 (3.59) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    572312 8rcm:I1 (3.59) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    572313 8rcm:I1 (3.59) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    572314 8rcm:I2 (3.59) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    572315 8rcm:I2 (3.59) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    572316 8rcm:J1 (3.59) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    572317 8rcm:J2 (3.59) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    572318 8rcm:K1 (3.59) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    572319 8rcm:K2 (3.59) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    572320 8rcm:L1 (3.59) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    572321 8rcm:L2 (3.59) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    572322 8rcm:M1 (3.59) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    572323 8rcm:M2 (3.59) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    572324 8rcm:M2 (3.59) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    572325 8rcm:N1 (3.59) BS01 rna ? GO:0000028 ... P0AG59 38409277
    572326 8rcm:N2 (3.59) BS01 rna ? GO:0000028 ... P0AG59 38409277
    572327 8rcm:O1 (3.59) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    572328 8rcm:O2 (3.59) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    572329 8rcm:O2 (3.59) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    572330 8rcm:P1 (3.59) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    572331 8rcm:Q1 (3.59) BS01 rna ? GO:0000028 ... P0AG63 38409277
    572332 8rcm:Q2 (3.59) BS01 rna ? GO:0000028 ... P0AG63 38409277
    572333 8rcm:R1 (3.59) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    572334 8rcm:R2 (3.59) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    572335 8rcm:S1 (3.59) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    572336 8rcm:S2 (3.59) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    572337 8rcm:T1 (3.59) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    572338 8rcm:U1 (3.59) BS01 rna ? GO:0000028 ... P68679 38409277
    572339 8rcm:U1 (3.59) BS02 rna ? GO:0000028 ... P68679 38409277
    572340 8rcm:U2 (3.59) BS01 rna ? GO:0000028 ... P68679 38409277
    572341 8rcm:U2 (3.59) BS02 rna ? GO:0000028 ... P68679 38409277
    572342 8rcm:a2 (3.59) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    572343 8rcm:b2 (3.59) BS01 rna ? GO:0000027 ... P60422 38409277
    572344 8rcm:b2 (3.59) BS02 rna ? GO:0000027 ... P60422 38409277
    572345 8rcm:e2 (3.59) BS01 rna ? GO:0000027 ... P62399 38409277
    572346 8rcm:e2 (3.59) BS02 rna ? GO:0000027 ... P62399 38409277
    572347 8rcm:e2 (3.59) BS03 rna ? GO:0000027 ... P62399 38409277
    572348 8rcm:g2 (3.59) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    572349 8rcm:h2 (3.59) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    572350 8rcm:h2 (3.59) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    572351 8rcm:i2 (3.59) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    572352 8rcm:i2 (3.59) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    572353 8rcm:l2 (3.59) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    572354 8rcm:o2 (3.59) BS01 rna ? GO:0002181 ... P02413 38409277
    572355 8rcm:r2 (3.59) BS01 rna ? GO:0002181 ... P0C018 38409277
    572356 8rcm:r2 (3.59) BS02 rna ? GO:0002181 ... P0C018 38409277
    572357 8rcm:z2 (3.59) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    572358 8rcm:z2 (3.59) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    572359 8rcs:12 (4.46) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    572360 8rcs:12 (4.46) BS02 rna ? GO:0000027 ... P0A7M2 38409277
    572361 8rcs:32 (4.46) BS01 rna ? GO:0000027 ... P0AG51 38409277
    572362 8rcs:4 (4.46) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    572363 8rcs:4 (4.46) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    572364 8rcs:62 (4.46) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    572365 8rcs:B (4.46) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    572366 8rcs:B (4.46) BS02 rna ? GO:0000028 ... P0A7V0 38409277
    572367 8rcs:B (4.46) BS03 peptide ? GO:0000028 ... P0A7V0 38409277
    572368 8rcs:B (4.46) BS04 ZN ? GO:0000028 ... P0A7V0 38409277
    572369 8rcs:B2 (4.46) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    572370 8rcs:C1 (4.46) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    572371 8rcs:C1 (4.46) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    572372 8rcs:C2 (4.46) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    572373 8rcs:D1 (4.46) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    572374 8rcs:D2 (4.46) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    572375 8rcs:E1 (4.46) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    572376 8rcs:E1 (4.46) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    572377 8rcs:E2 (4.46) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    572378 8rcs:E2 (4.46) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    572379 8rcs:F1 (4.46) BS01 rna ? GO:0002181 ... P02358 38409277
    572380 8rcs:F2 (4.46) BS01 rna ? GO:0002181 ... P02358 38409277
    572381 8rcs:G1 (4.46) BS01 rna ? GO:0000028 ... P02359 38409277
    572382 8rcs:G2 (4.46) BS01 rna ? GO:0000028 ... P02359 38409277
    572383 8rcs:G2 (4.46) BS02 rna ? GO:0000028 ... P02359 38409277
    572384 8rcs:H1 (4.46) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    572385 8rcs:H2 (4.46) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    572386 8rcs:I1 (4.46) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    572387 8rcs:I2 (4.46) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    572388 8rcs:I2 (4.46) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    572389 8rcs:J1 (4.46) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    572390 8rcs:J2 (4.46) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    572391 8rcs:K1 (4.46) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    572392 8rcs:K2 (4.46) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    572393 8rcs:L1 (4.46) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    572394 8rcs:L2 (4.46) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    572395 8rcs:M1 (4.46) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    572396 8rcs:M2 (4.46) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    572397 8rcs:N1 (4.46) BS01 peptide ? GO:0000028 ... P0AG59 38409277
    572398 8rcs:N1 (4.46) BS02 rna ? GO:0000028 ... P0AG59 38409277
    572399 8rcs:N2 (4.46) BS01 rna ? GO:0000028 ... P0AG59 38409277
    572400 8rcs:O1 (4.46) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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