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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    571601 8r3q:C (1.88) BS02 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    571602 8r3q:C (1.88) BS03 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    571603 8r3q:D (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    571604 8r3q:D (1.88) BS02 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    571605 8r3q:D (1.88) BS03 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    571606 8r3r:A (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    571607 8r3r:A (2.35) BS02 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    571608 8r3r:A (2.35) BS03 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    571609 8r3r:B (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    571610 8r3r:B (2.35) BS02 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    571611 8r3r:B (2.35) BS03 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    571612 8r3r:C (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    571613 8r3r:C (2.35) BS02 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    571614 8r3r:C (2.35) BS03 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    571615 8r3r:D (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    571616 8r3r:D (2.35) BS02 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    571617 8r3r:D (2.35) BS03 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    571618 8r3s:A (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571619 8r3s:A (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    571620 8r3s:A (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571621 8r3s:B (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571622 8r3s:B (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571623 8r3s:B (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    571624 8r3s:C (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571625 8r3s:C (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    571626 8r3s:C (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571627 8r3s:D (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571628 8r3s:D (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571629 8r3s:D (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    571630 8r3s:E (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571631 8r3s:E (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    571632 8r3s:E (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571633 8r3s:F (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571634 8r3s:F (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571635 8r3s:F (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    571636 8r3s:G (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571637 8r3s:G (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    571638 8r3s:G (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571639 8r3s:H (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571640 8r3s:H (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571641 8r3s:H (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    571642 8r3s:I (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571643 8r3s:I (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    571644 8r3s:I (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571645 8r3s:J (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571646 8r3s:J (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    571647 8r3s:J (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    571648 8r3v:12 (3.28) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    571649 8r3v:32 (3.28) BS01 rna ? GO:0000027 ... P0AG51 38409277
    571650 8r3v:32 (3.28) BS02 rna ? GO:0000027 ... P0AG51 38409277
    571651 8r3v:4 (3.28) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    571652 8r3v:4 (3.28) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    571653 8r3v:4 (3.28) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    571654 8r3v:62 (3.28) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    571655 8r3v:B (3.28) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    571656 8r3v:B (3.28) BS02 peptide ? GO:0000028 ... P0A7V0 38409277
    571657 8r3v:B2 (3.28) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    571658 8r3v:C1 (3.28) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    571659 8r3v:C1 (3.28) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    571660 8r3v:C2 (3.28) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    571661 8r3v:C2 (3.28) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    571662 8r3v:D1 (3.28) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    571663 8r3v:D2 (3.28) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    571664 8r3v:E1 (3.28) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    571665 8r3v:E1 (3.28) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    571666 8r3v:E2 (3.28) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    571667 8r3v:E2 (3.28) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    571668 8r3v:F1 (3.28) BS01 rna ? GO:0002181 ... P02358 38409277
    571669 8r3v:F2 (3.28) BS01 rna ? GO:0002181 ... P02358 38409277
    571670 8r3v:G1 (3.28) BS01 rna ? GO:0000028 ... P02359 38409277
    571671 8r3v:G2 (3.28) BS01 rna ? GO:0000028 ... P02359 38409277
    571672 8r3v:G2 (3.28) BS02 rna ? GO:0000028 ... P02359 38409277
    571673 8r3v:G2 (3.28) BS03 rna ? GO:0000028 ... P02359 38409277
    571674 8r3v:H1 (3.28) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    571675 8r3v:H2 (3.28) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    571676 8r3v:I1 (3.28) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    571677 8r3v:I1 (3.28) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    571678 8r3v:I2 (3.28) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    571679 8r3v:I2 (3.28) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    571680 8r3v:J1 (3.28) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    571681 8r3v:J2 (3.28) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    571682 8r3v:K1 (3.28) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    571683 8r3v:K2 (3.28) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    571684 8r3v:L1 (3.28) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    571685 8r3v:L2 (3.28) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    571686 8r3v:M1 (3.28) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    571687 8r3v:M2 (3.28) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    571688 8r3v:M2 (3.28) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    571689 8r3v:N1 (3.28) BS01 rna ? GO:0000028 ... P0AG59 38409277
    571690 8r3v:N2 (3.28) BS01 rna ? GO:0000028 ... P0AG59 38409277
    571691 8r3v:O1 (3.28) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    571692 8r3v:O2 (3.28) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    571693 8r3v:O2 (3.28) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    571694 8r3v:P1 (3.28) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    571695 8r3v:Q1 (3.28) BS01 rna ? GO:0000028 ... P0AG63 38409277
    571696 8r3v:Q2 (3.28) BS01 rna ? GO:0000028 ... P0AG63 38409277
    571697 8r3v:R1 (3.28) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    571698 8r3v:R2 (3.28) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    571699 8r3v:S1 (3.28) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    571700 8r3v:S2 (3.28) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    571701 8r3v:T1 (3.28) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    571702 8r3v:U1 (3.28) BS01 rna ? GO:0000028 ... P68679 38409277
    571703 8r3v:U1 (3.28) BS02 rna ? GO:0000028 ... P68679 38409277
    571704 8r3v:U2 (3.28) BS01 rna ? GO:0000028 ... P68679 38409277
    571705 8r3v:U2 (3.28) BS02 rna ? GO:0000028 ... P68679 38409277
    571706 8r3v:a2 (3.28) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    571707 8r3v:b2 (3.28) BS01 rna ? GO:0000027 ... P60422 38409277
    571708 8r3v:b2 (3.28) BS02 rna ? GO:0000027 ... P60422 38409277
    571709 8r3v:e2 (3.28) BS01 rna ? GO:0000027 ... P62399 38409277
    571710 8r3v:e2 (3.28) BS02 rna ? GO:0000027 ... P62399 38409277
    571711 8r3v:e2 (3.28) BS03 rna ? GO:0000027 ... P62399 38409277
    571712 8r3v:g2 (3.28) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    571713 8r3v:h2 (3.28) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    571714 8r3v:h2 (3.28) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    571715 8r3v:i2 (3.28) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    571716 8r3v:i2 (3.28) BS02 rna ? GO:0002181 ... P0A7R1 38409277
    571717 8r3v:l2 (3.28) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    571718 8r3v:o2 (3.28) BS01 rna ? GO:0002181 ... P02413 38409277
    571719 8r3v:r2 (3.28) BS01 rna ? GO:0002181 ... P0C018 38409277
    571720 8r3v:r2 (3.28) BS02 rna ? GO:0002181 ... P0C018 38409277
    571721 8r3v:z2 (3.28) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    571722 8r3v:z2 (3.28) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    571723 8r55:0 (3.57) BS01 rna ? GO:0003735 ... A0A3A5I502 38177497
    571724 8r55:1 (3.57) BS01 rna ? GO:0003735 ... A0A3A5I267 38177497
    571725 8r55:2 (3.57) BS01 rna ? GO:0003735 ... A0A063XCT1 38177497
    571726 8r55:3 (3.57) BS01 rna ? GO:0003735 ... A0A063XFQ7 38177497
    571727 8r55:4 (3.57) BS01 rna ? GO:0003735 ... A0A199WAC7 38177497
    571728 8r55:6 (3.57) BS01 rna ? GO:0003735 ... A0A063XD11 38177497
    571729 8r55:B (3.57) BS01 rna ? GO:0003735 ... A0A063XFB4 38177497
    571730 8r55:C (3.57) BS01 rna ? GO:0003676 ... A0A3N6BZP3 38177497
    571731 8r55:C (3.57) BS02 rna ? GO:0003676 ... A0A3N6BZP3 38177497
    571732 8r55:D (3.57) BS01 rna ? GO:0003723 ... A0A063XDX5 38177497
    571733 8r55:E (3.57) BS01 rna ? GO:0003723 ... A0A1A0G5K9 38177497
    571734 8r55:E (3.57) BS02 rna ? GO:0003723 ... A0A1A0G5K9 38177497
    571735 8r55:F (3.57) BS01 rna ? GO:0003735 ... A0A063XCU1 38177497
    571736 8r55:G (3.57) BS01 rna ? GO:0000028 ... A0A063X741 38177497
    571737 8r55:H (3.57) BS01 rna ? GO:0003735 ... A0A063XCN0 38177497
    571738 8r55:I (3.57) BS01 rna ? GO:0003723 ... A0A063XCS1 38177497
    571739 8r55:J (3.57) BS01 rna ? GO:0000049 ... F5HRV5 38177497
    571740 8r55:K (3.57) BS01 rna ? GO:0003735 ... A0A7U5HS75 38177497
    571741 8r55:L (3.57) BS01 rna ? GO:0000049 ... A0A063XCJ2 38177497
    571742 8r55:M (3.57) BS01 rna ? GO:0000049 ... A0A063X7B3 38177497
    571743 8r55:M (3.57) BS02 rna ? GO:0000049 ... A0A063X7B3 38177497
    571744 8r55:N (3.57) BS01 rna ? GO:0003735 ... F5HRV2 38177497
    571745 8r55:O (3.57) BS01 rna ? GO:0003735 ... A0A2J0WEG5 38177497
    571746 8r55:P (3.57) BS01 rna ? GO:0003735 ... A0A063XHU4 38177497
    571747 8r55:Q (3.57) BS01 rna ? GO:0003735 ... A0A063XCK9 38177497
    571748 8r55:R (3.57) BS01 rna ? GO:0003735 ... A0A3A5I3T1 38177497
    571749 8r55:S (3.57) BS01 rna ? GO:0000028 ... F5HRU0 38177497
    571750 8r55:T (3.57) BS01 rna ? GO:0003723 ... A0A086DNG8 38177497
    571751 8r55:Z (3.57) BS01 rna ? GO:0002181 ... A0A063XCB6 38177497
    571752 8r55:a (3.57) BS01 rna ? GO:0003735 ... A0A063X745 38177497
    571753 8r55:b (3.57) BS01 rna ? GO:0003735 ... A0A063X8U6 38177497
    571754 8r55:c (3.57) BS01 rna ? GO:0000049 ... A0A063XB64 38177497
    571755 8r55:c (3.57) BS02 rna ? GO:0000049 ... A0A063XB64 38177497
    571756 8r55:c (3.57) BS03 rna ? GO:0000049 ... A0A063XB64 38177497
    571757 8r55:d (3.57) BS01 rna N/A GO:0003735 ... N/A 38177497
    571758 8r55:e (3.57) BS01 rna ? GO:0003729 ... A0A063XCH0 38177497
    571759 8r55:f (3.57) BS01 rna ? GO:0003735 ... A0A063X754 38177497
    571760 8r55:f (3.57) BS02 rna ? GO:0003735 ... A0A063X754 38177497
    571761 8r55:i (3.57) BS01 rna ? GO:0003735 ... A0A063XCP1 38177497
    571762 8r55:j (3.57) BS01 rna ? GO:0000049 ... A0A063XB41 38177497
    571763 8r55:j (3.57) BS02 rna ? GO:0000049 ... A0A063XB41 38177497
    571764 8r55:k (3.57) BS01 rna ? GO:0003735 ... A0A063XCG5 38177497
    571765 8r55:l (3.57) BS01 rna ? GO:0003735 ... F5HRS9 38177497
    571766 8r55:l (3.57) BS02 rna ? GO:0003735 ... F5HRS9 38177497
    571767 8r55:m (3.57) BS01 rna ? GO:0003735 ... A0A063XHU6 38177497
    571768 8r55:m (3.57) BS02 rna ? GO:0003735 ... A0A063XHU6 38177497
    571769 8r55:n (3.57) BS01 rna ? GO:0000027 ... A0A063XFC1 38177497
    571770 8r55:o (3.57) BS01 rna ? GO:0003723 ... A0A063XIS2 38177497
    571771 8r55:r (3.57) BS01 rna ? GO:0003735 ... F5HRT3 38177497
    571772 8r55:s (3.57) BS01 rna ? GO:0000027 ... A0A063XB36 38177497
    571773 8r55:t (3.57) BS01 rna ? GO:0003723 ... F5HRS7 38177497
    571774 8r55:u (3.57) BS01 rna ? GO:0003735 ... A0A063XF22 38177497
    571775 8r55:u (3.57) BS02 rna ? GO:0003735 ... A0A063XF22 38177497
    571776 8r55:v (3.57) BS01 rna ? GO:0003735 ... A0A063XHT6 38177497
    571777 8r55:w (3.57) BS01 rna ? GO:0003735 ... F5HRV8 38177497
    571778 8r55:x (3.57) BS01 rna ? GO:0003735 ... F5HRU6 38177497
    571779 8r57:F (2.55) BS01 rna ? GO:0003723 ... W5I1R7 38139282
    571780 8r57:K (2.55) BS01 rna ? GO:0003723 ... W5AUH7 38139282
    571781 8r57:M (2.55) BS01 rna ? GO:0003735 ... W5FEZ3 38139282
    571782 8r57:P (2.55) BS01 rna ? GO:0000028 ... W5D067 38139282
    571783 8r57:P (2.55) BS02 MG ? GO:0000028 ... W5D067 38139282
    571784 8r57:Q (2.55) BS01 rna ? GO:0000462 ... W5DS33 38139282
    571785 8r57:R (2.55) BS01 rna ? GO:0000028 ... A0A3B6LV48 38139282
    571786 8r57:S (2.55) BS01 rna ? GO:0003676 ... Q8L806 38139282
    571787 8r57:T (2.55) BS01 rna ? GO:0003735 ... W5FWF5 38139282
    571788 8r57:U (2.55) BS01 rna ? GO:0003735 ... U5HTD8 38139282
    571789 8r57:Z (2.55) BS01 rna ? GO:0003735 ... W5EP45 38139282
    571790 8r57:c (2.55) BS01 rna ? GO:0000028 ... W5E8X2 38139282
    571791 8r57:d (2.55) BS01 rna ? GO:0002181 ... Q5I7K3 38139282
    571792 8r57:d (2.55) BS02 ZN ? GO:0002181 ... Q5I7K3 38139282
    571793 8r57:f (2.55) BS01 rna ? GO:0003729 ... W5A9E1 38139282
    571794 8r57:f (2.55) BS02 ZN ? GO:0003729 ... W5A9E1 38139282
    571795 8r57:g (2.55) BS01 rna ? GO:0005080 ... W5D4F5 38139282
    571796 8r57:h (2.55) BS01 rna ? GO:0003735 ... A0A3B5XY60 38139282
    571797 8r5h:R (3.44) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    571798 8r5h:R (3.44) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    571799 8r5h:R (3.44) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    571800 8r5o:E (2.49) BS01 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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