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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    569801 8qh7:C (1.85) BS01 FES 7.1.1.- GO:0003954 ... O66842 38503292
    569802 8qhc:C (3.1) BS01 rna ? GO:0003723 ... P0CE48 37923743
    569803 8qhc:C (3.1) BS02 MG ? GO:0003723 ... P0CE48 37923743
    569804 8qhc:C (3.1) BS03 GTP ? GO:0003723 ... P0CE48 37923743
    569805 8qhk:A (1.95) BS01 FES 7.1.1.- GO:0003954 ... O66842 38503292
    569806 8qhk:C (1.95) BS01 FES 7.1.1.- GO:0003954 ... O66842 38503292
    569807 8qhl:A (1.9) BS01 peptide 3.4.15.1 GO:0006508 ... P12821 37904282
    569808 8qhl:A (1.9) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 37904282
    569809 8qhl:A (1.9) BS03 MG 3.4.15.1 GO:0006508 ... P12821 37904282
    569810 8qhl:B (1.9) BS01 peptide 3.4.15.1 GO:0006508 ... P12821 37904282
    569811 8qhl:B (1.9) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 37904282
    569812 8qhp:A (2.8) BS01 ZN 6.1.1.16 GO:0000166 ... Q8U227 38325366
    569813 8qhp:B (2.8) BS01 ZN 6.1.1.16 GO:0000166 ... Q8U227 38325366
    569814 8qic:A (2.5) BS01 VL0 6.1.1.3 GO:0000166 ... P0A8M3 38558084
    569815 8qic:A (2.5) BS02 ZN 6.1.1.3 GO:0000166 ... P0A8M3 38558084
    569816 8qic:D (2.5) BS01 VL0 6.1.1.3 GO:0000166 ... P0A8M3 38558084
    569817 8qic:D (2.5) BS02 ZN 6.1.1.3 GO:0000166 ... P0A8M3 38558084
    569818 8qid:A (1.73) BS01 0IM N/A GO:0004595 ... B1MDL6 38896426
    569819 8qid:B (1.73) BS01 0IM N/A GO:0004595 ... B1MDL6 38896426
    569820 8qid:C (1.73) BS01 0IM N/A GO:0004595 ... B1MDL6 38896426
    569821 8qix:B (1.579) BS01 VJ7 N/A GO:0004595 ... B1MDL6 38896426
    569822 8qix:C (1.579) BS01 VJ7 N/A GO:0004595 ... B1MDL6 38896426
    569823 8qiy:A (1.5149) BS01 VCC N/A GO:0004595 ... B1MDL6 38896426
    569824 8qiy:B (1.5149) BS01 VCC N/A GO:0004595 ... B1MDL6 38896426
    569825 8qj0:L (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    569826 8qj0:M (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    569827 8qj0:N (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    569828 8qj0:O (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    569829 8qj4:A (1.7) BS01 NH4 ? GO:0005886 ... Q12R70 38838143
    569830 8qj4:A (1.7) BS02 NH4 ? GO:0005886 ... Q12R70 38838143
    569831 8qj4:B (1.7) BS01 NH4 ? GO:0005886 ... Q12R70 38838143
    569832 8qj4:B (1.7) BS02 NH4 ? GO:0005886 ... Q12R70 38838143
    569833 8qj7:A (3.07) BS01 ZN 2.7.7.7 GO:0000166 ... P09884 38335062
    569834 8qj7:A (3.07) BS02 ZN 2.7.7.7 GO:0000166 ... P09884 38335062
    569835 8qj7:C (3.07) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 38335062
    569836 8qj7:C (3.07) BS02 MN 2.7.7.102 GO:0000287 ... P49642 38335062
    569837 8qj7:C (3.07) BS03 ATP 2.7.7.102 GO:0000287 ... P49642 38335062
    569838 8qj7:D (3.07) BS01 SF4 ? GO:0003677 ... P49643 38335062
    569839 8qj8:A (1.538) BS01 VIW N/A GO:0004595 ... B1MDL6 38896426
    569840 8qj8:B (1.538) BS01 VIW N/A GO:0004595 ... B1MDL6 38896426
    569841 8qj8:C (1.538) BS01 VIW N/A GO:0004595 ... B1MDL6 38896426
    569842 8qjr:G (3.17) BS01 VLH 3.6.4.- GO:0006338 ... P51532 38180485
    569843 8qjr:H (3.17) BS01 VLH 3.6.4.- GO:0006338 ... P51532 38180485
    569844 8qjt:A (2.568) BS01 VLC 3.6.4.- GO:0006338 ... P51531 38180485
    569845 8qjt:B (2.568) BS01 VLC 3.6.4.- GO:0006338 ... P51531 38180485
    569846 8qjt:C (2.568) BS01 VLC 3.6.4.- GO:0006338 ... P51531 38180485
    569847 8qjz:A (1.35) BS01 MN 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    569848 8qjz:A (1.35) BS02 MN 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    569849 8qjz:A (1.35) BS03 LP5 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    569850 8qk2:A (1.95) BS01 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    569851 8qk2:A (1.95) BS02 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    569852 8qk2:A (1.95) BS03 VTF 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    569853 8qk5:A (1.95) BS01 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    569854 8qk5:A (1.95) BS02 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    569855 8qk5:A (1.95) BS03 VN6 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    569856 8qk9:A (1.9) BS01 MN 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    569857 8qk9:A (1.9) BS02 MN 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    569858 8qk9:A (1.9) BS03 VQ9 3.6.1.54 GO:0005737 ... A0A066QL39 38579010
    569859 8qka:A (2.0) BS01 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    569860 8qka:A (2.0) BS02 MN 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    569861 8qka:A (2.0) BS03 VTK 3.6.1.54 GO:0005737 ... A6T5R0 38579010
    569862 8qkt:AAA (3.261) BS01 dna ? GO:0000786 ... P68431 N/A
    569863 8qkt:AAA (3.261) BS02 dna ? GO:0000786 ... P68431 N/A
    569864 8qkt:CCC (3.261) BS01 dna ? GO:0000786 ... H2QSF5 N/A
    569865 8qkt:CCC (3.261) BS02 dna ? GO:0000786 ... H2QSF5 N/A
    569866 8qkt:DDD (3.261) BS01 dna ? GO:0000786 ... P06899 N/A
    569867 8qkt:DDD (3.261) BS02 dna ? GO:0000786 ... P06899 N/A
    569868 8qkt:EEE (3.261) BS01 dna ? GO:0000786 ... P68431 N/A
    569869 8qkt:EEE (3.261) BS02 dna ? GO:0000786 ... P68431 N/A
    569870 8qkt:GGG (3.261) BS01 dna ? GO:0000786 ... A0A2Y9FT95 N/A
    569871 8qkt:GGG (3.261) BS02 dna ? GO:0000786 ... A0A2Y9FT95 N/A
    569872 8qkt:HHH (3.261) BS01 dna ? GO:0000786 ... P06899 N/A
    569873 8qkt:HHH (3.261) BS02 dna ? GO:0000786 ... P06899 N/A
    569874 8qkt:KKK (3.261) BS01 dna ? GO:0000786 ... P68431 N/A
    569875 8qkt:KKK (3.261) BS02 dna ? GO:0000786 ... P68431 N/A
    569876 8qkt:MMM (3.261) BS01 dna ? GO:0000786 ... H2QSF5 N/A
    569877 8qkt:MMM (3.261) BS02 dna ? GO:0000786 ... H2QSF5 N/A
    569878 8qkt:NNN (3.261) BS01 dna ? GO:0000786 ... P06899 N/A
    569879 8qkt:NNN (3.261) BS02 dna ? GO:0000786 ... P06899 N/A
    569880 8qkt:OOO (3.261) BS01 dna ? GO:0000786 ... P68431 N/A
    569881 8qkt:OOO (3.261) BS02 dna ? GO:0000786 ... P68431 N/A
    569882 8qkt:QQQ (3.261) BS01 dna ? GO:0000786 ... A0A2Y9FT95 N/A
    569883 8qkt:QQQ (3.261) BS02 dna ? GO:0000786 ... A0A2Y9FT95 N/A
    569884 8qkt:RRR (3.261) BS01 dna ? GO:0000786 ... P06899 N/A
    569885 8qkt:RRR (3.261) BS02 dna ? GO:0000786 ... P06899 N/A
    569886 8qlg:A (2.1) BS01 peptide ? GO:0015833 ... H2BJN6 38838057
    569887 8qlg:A (2.1) BS02 ZN ? GO:0015833 ... H2BJN6 38838057
    569888 8qlg:A (2.1) BS03 ZN ? GO:0015833 ... H2BJN6 38838057
    569889 8qlg:A (2.1) BS04 ZN ? GO:0015833 ... H2BJN6 38838057
    569890 8qlg:B (2.1) BS01 peptide ? GO:0015833 ... H2BJN6 38838057
    569891 8qlg:B (2.1) BS02 ZN ? GO:0015833 ... H2BJN6 38838057
    569892 8qlg:B (2.1) BS03 ZN ? GO:0015833 ... H2BJN6 38838057
    569893 8qlg:B (2.1) BS04 ZN ? GO:0015833 ... H2BJN6 38838057
    569894 8qlj:A (1.65) BS01 peptide ? GO:0005886 ... P0A4G1 38838057
    569895 8qlk:A (2.29) BS01 peptide ? GO:0005886 ... P0A4G1 38838057
    569896 8qll:A (2.4) BS01 GSH N/A GO:0004364 ... Q9Z339 38441878
    569897 8qll:B (2.4) BS01 GSH N/A GO:0004364 ... Q9Z339 38441878
    569898 8qlm:A (1.66) BS01 peptide ? GO:0005886 ... P0A4G1 38838057
    569899 8qlm:B (1.66) BS01 peptide ? GO:0005886 ... P0A4G1 38838057
    569900 8qlv:A (1.49) BS01 peptide ? GO:0005886 ... P0A4G1 38838057
    569901 8qm1:A (1.91) BS01 CER 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    569902 8qm1:B (1.91) BS01 CER 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    569903 8qma:B (3.5) BS01 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428434
    569904 8qmf:A (2.1) BS01 TPP 2.2.1.1 GO:0003824 ... Q7MDD4 38145310
    569905 8qmf:A (2.1) BS02 MG 2.2.1.1 GO:0003824 ... Q7MDD4 38145310
    569906 8qmf:A (2.1) BS03 TPP 2.2.1.1 GO:0003824 ... Q7MDD4 38145310
    569907 8qmf:B (2.1) BS01 TPP 2.2.1.1 GO:0003824 ... Q7MDD4 38145310
    569908 8qmf:B (2.1) BS02 TPP 2.2.1.1 GO:0003824 ... Q7MDD4 38145310
    569909 8qmf:B (2.1) BS03 MG 2.2.1.1 GO:0003824 ... Q7MDD4 38145310
    569910 8qmo:A (2.76) BS01 MOO ? GO:0001890 ... P08238 38135181
    569911 8qmo:A (2.76) BS02 ADP ? GO:0001890 ... P08238 38135181
    569912 8qmo:B (2.76) BS01 MOO ? GO:0001890 ... P08238 38135181
    569913 8qmo:B (2.76) BS02 ADP ? GO:0001890 ... P08238 38135181
    569914 8qmx:A (1.4) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 38263933
    569915 8qmx:A (1.4) BS02 5J8 1.3.1.42 GO:0005777 ... Q9FEW9 38263933
    569916 8qmx:A (1.4) BS03 5J8 1.3.1.42 GO:0005777 ... Q9FEW9 38263933
    569917 8qmx:B (1.4) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 38263933
    569918 8qmx:B (1.4) BS02 5J8 1.3.1.42 GO:0005777 ... Q9FEW9 38263933
    569919 8qmy:A (1.9) BS01 FAD N/A GO:0003885 ... N/A N/A
    569920 8qmy:B (1.9) BS01 FAD N/A GO:0003885 ... N/A N/A
    569921 8qmy:C (1.9) BS01 FAD N/A GO:0003885 ... N/A N/A
    569922 8qn3:A (1.75) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 38263933
    569923 8qn3:A (1.75) BS02 WI6 1.3.1.42 GO:0005777 ... Q9FEW9 38263933
    569924 8qn3:B (1.75) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 38263933
    569925 8qn3:B (1.75) BS02 WI6 1.3.1.42 GO:0005777 ... Q9FEW9 38263933
    569926 8qn5:A (1.544) BS01 0GA 4.2.99.21
    5.4.4.2
    5.4.99.5
    GO:0000162 ... P9WFX1 38004425
    569927 8qn5:B (1.544) BS01 0GA 4.2.99.21
    5.4.4.2
    5.4.99.5
    GO:0000162 ... P9WFX1 38004425
    569928 8qn5:C (1.544) BS01 0GA 4.2.99.21
    5.4.4.2
    5.4.99.5
    GO:0000162 ... P9WFX1 38004425
    569929 8qn5:D (1.544) BS01 0GA 4.2.99.21
    5.4.4.2
    5.4.99.5
    GO:0000162 ... P9WFX1 38004425
    569930 8qnb:A (2.1) BS01 FAD N/A GO:0003885 ... N/A N/A
    569931 8qnb:A (2.1) BS02 X8X N/A GO:0003885 ... N/A N/A
    569932 8qnc:A (1.7) BS01 FAD N/A GO:0003885 ... N/A N/A
    569933 8qnd:A (1.9) BS01 CA 3.2.2.- GO:0005829 ... A5JJT3 38203708
    569934 8qnd:A (1.9) BS02 CA 3.2.2.- GO:0005829 ... A5JJT3 38203708
    569935 8qnd:B (1.9) BS01 CA 3.2.2.- GO:0005829 ... A5JJT3 38203708
    569936 8qnd:B (1.9) BS02 CA 3.2.2.- GO:0005829 ... A5JJT3 38203708
    569937 8qnd:C (1.9) BS01 CA 3.2.2.- GO:0005829 ... A5JJT3 38203708
    569938 8qnd:C (1.9) BS02 CA 3.2.2.- GO:0005829 ... A5JJT3 38203708
    569939 8qnd:D (1.9) BS01 CA 3.2.2.- GO:0005829 ... A5JJT3 38203708
    569940 8qnd:D (1.9) BS02 CA 3.2.2.- GO:0005829 ... A5JJT3 38203708
    569941 8qnr:A (2.3) BS01 FAD N/A GO:0003885 ... N/A N/A
    569942 8qnr:A (2.3) BS02 X8L N/A GO:0003885 ... N/A N/A
    569943 8qo9:21 (5.29) BS01 rna ? GO:0000243 ... P62314 38383864
    569944 8qo9:22 (5.29) BS01 rna ? GO:0000245 ... P62316 38383864
    569945 8qo9:23 (5.29) BS01 rna ? GO:0000243 ... P62318 38383864
    569946 8qo9:2B (5.29) BS01 rna ? GO:0000398 ... P08579 38383864
    569947 8qo9:2e (5.29) BS01 rna ? GO:0000245 ... P62304 38383864
    569948 8qo9:2f (5.29) BS01 rna ? GO:0000387 ... P62306 38383864
    569949 8qo9:2g (5.29) BS01 rna ? GO:0000245 ... P62308 38383864
    569950 8qo9:41 (5.29) BS01 rna ? GO:0000243 ... P62314 38383864
    569951 8qo9:42 (5.29) BS01 rna ? GO:0000245 ... P62316 38383864
    569952 8qo9:43 (5.29) BS01 rna ? GO:0000243 ... P62318 38383864
    569953 8qo9:4b (5.29) BS01 rna ? GO:0000387 ... P14678 38383864
    569954 8qo9:4e (5.29) BS01 rna ? GO:0000245 ... P62304 38383864
    569955 8qo9:4f (5.29) BS01 rna ? GO:0000387 ... P62306 38383864
    569956 8qo9:4g (5.29) BS01 rna ? GO:0000245 ... P62308 38383864
    569957 8qo9:51 (5.29) BS01 rna ? GO:0000243 ... P62314 38383864
    569958 8qo9:52 (5.29) BS01 rna ? GO:0000245 ... P62316 38383864
    569959 8qo9:53 (5.29) BS01 rna ? GO:0000243 ... P62318 38383864
    569960 8qo9:5b (5.29) BS01 rna ? GO:0000387 ... P14678 38383864
    569961 8qo9:5e (5.29) BS01 rna ? GO:0000245 ... P62304 38383864
    569962 8qo9:5f (5.29) BS01 rna ? GO:0000387 ... P62306 38383864
    569963 8qo9:A (5.29) BS01 rna ? GO:0000244 ... Q6P2Q9 38383864
    569964 8qo9:A (5.29) BS02 rna ? GO:0000244 ... Q6P2Q9 38383864
    569965 8qo9:A (5.29) BS03 rna ? GO:0000244 ... Q6P2Q9 38383864
    569966 8qo9:B (5.29) BS01 rna 3.6.4.13 GO:0000354 ... O75643 38383864
    569967 8qo9:B1 (5.29) BS01 rna ? GO:0000245 ... O75533 38383864
    569968 8qo9:B1 (5.29) BS02 rna ? GO:0000245 ... O75533 38383864
    569969 8qo9:B2 (5.29) BS01 rna ? GO:0000398 ... Q13435 38383864
    569970 8qo9:B6 (5.29) BS01 rna ? GO:0000398 ... Q9Y3B4 38383864
    569971 8qo9:D (5.29) BS01 rna ? GO:0000245 ... P83876 38383864
    569972 8qo9:G (5.29) BS01 rna ? GO:0000245 ... Q15428 38383864
    569973 8qo9:J (5.29) BS01 rna ? GO:0000244 ... O43395 38383864
    569974 8qo9:K (5.29) BS01 rna ? GO:0000398 ... P55081 38383864
    569975 8qo9:K (5.29) BS02 rna ? GO:0000398 ... P55081 38383864
    569976 8qo9:L (5.29) BS01 rna ? GO:0000244 ... Q8WWY3 38383864
    569977 8qo9:L (5.29) BS02 rna ? GO:0000244 ... Q8WWY3 38383864
    569978 8qo9:M (5.29) BS01 rna ? GO:0000398 ... P55769 38383864
    569979 8qo9:N (5.29) BS01 rna ? GO:0000244 ... O94906 38383864
    569980 8qo9:Q (5.29) BS01 rna ? GO:0000398 ... P41223 38383864
    569981 8qo9:X (5.29) BS01 rna ? GO:0000398 ... O75554 38383864
    569982 8qo9:X (5.29) BS02 rna ? GO:0000398 ... O75554 38383864
    569983 8qoa:0 (2.0) BS01 rna ? GO:0000027 ... P0A7N9 38503753
    569984 8qoa:1 (2.0) BS01 rna ? GO:0002181 ... P0A7P5 38503753
    569985 8qoa:2 (2.0) BS01 rna ? GO:0002181 ... P0A7Q1 38503753
    569986 8qoa:3 (2.0) BS01 rna ? GO:0002181 ... P0A7Q6 38503753
    569987 8qoa:3 (2.0) BS02 ZN ? GO:0002181 ... P0A7Q6 38503753
    569988 8qoa:4 (2.0) BS01 rna ? GO:0002181 ... P0A7M9 38503753
    569989 8qoa:4 (2.0) BS02 ZN ? GO:0002181 ... P0A7M9 38503753
    569990 8qoa:B (2.0) BS01 rna ? GO:0000028 ... P0A7V0 38503753
    569991 8qoa:C (2.0) BS01 rna ? GO:0000028 ... P0A7V3 38503753
    569992 8qoa:D (2.0) BS01 rna ? GO:0000028 ... P0A7V8 38503753
    569993 8qoa:E (2.0) BS01 rna ? GO:0000028 ... P0A7W1 38503753
    569994 8qoa:F (2.0) BS01 rna ? GO:0002181 ... P02358 38503753
    569995 8qoa:G (2.0) BS01 rna ? GO:0000028 ... P02359 38503753
    569996 8qoa:H (2.0) BS01 rna ? GO:0000028 ... P0A7W7 38503753
    569997 8qoa:I (2.0) BS01 rna ? GO:0000049 ... P0A7X3 38503753
    569998 8qoa:I (2.0) BS02 rna ? GO:0000049 ... P0A7X3 38503753
    569999 8qoa:J (2.0) BS01 rna ? GO:0000049 ... P0A7R5 38503753
    570000 8qoa:K (2.0) BS01 rna ? GO:0002181 ... P0A7R9 38503753

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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