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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    56801 2jjk:B (2.0) BS01 R15 3.1.3.11 GO:0000122 ... P09467 18650089 BindingDB: IC50=4nM
    56802 2jjk:C (2.0) BS01 R15 3.1.3.11 GO:0000122 ... P09467 18650089 PDBbind: -logKd/Ki=8.05, IC50=9nM
    BindingDB: IC50=4nM
    56803 2jjk:D (2.0) BS01 R15 3.1.3.11 GO:0000122 ... P09467 18650089 MOAD: ic50=9nM
    BindingDB: IC50=4nM
    56804 2jjx:A (2.82) BS01 ATP 2.7.4.22 GO:0005524 ... A0A6L7HKK4 18625239
    56805 2jjx:A (2.82) BS02 ATP 2.7.4.22 GO:0005524 ... A0A6L7HKK4 18625239
    56806 2jjx:B (2.82) BS01 ATP 2.7.4.22 GO:0005524 ... A0A6L7HKK4 18625239
    56807 2jjx:B (2.82) BS02 ATP 2.7.4.22 GO:0005524 ... A0A6L7HKK4 18625239
    56808 2jjx:C (2.82) BS01 ATP 2.7.4.22 GO:0005524 ... A0A6L7HKK4 18625239
    56809 2jjx:C (2.82) BS02 ATP 2.7.4.22 GO:0005524 ... A0A6L7HKK4 18625239
    56810 2jk5:C (2.4) BS01 TBA ? GO:0005249 ... P0A334 25093676
    56811 2jk6:A (2.95) BS01 FAD 1.8.1.12 GO:0000166 ... A4HSF7 19317451
    56812 2jk6:B (2.95) BS01 FAD 1.8.1.12 GO:0000166 ... A4HSF7 19317451
    56813 2jka:A (1.9) BS01 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    56814 2jka:B (1.9) BS01 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    56815 2jkb:A (1.54) BS01 SKD 3.2.1.18 GO:0004308 ... Q54727 18775704
    56816 2jke:A (1.7) BS01 NOJ 3.2.1.3 GO:0000272 ... G8JZS4 18848471 MOAD: Ki=59uM
    PDBbind: -logKd/Ki=4.23, Ki=59uM
    56817 2jke:A (1.7) BS02 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    56818 2jke:B (1.7) BS01 NOJ 3.2.1.3 GO:0000272 ... G8JZS4 18848471 MOAD: Ki=59uM
    56819 2jke:B (1.7) BS02 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    56820 2jkg:A (1.89) BS01 peptide ? GO:0003779 ... Q8I2J4 19000816
    56821 2jkg:A (1.89) BS02 MG ? GO:0003779 ... Q8I2J4 19000816
    56822 2jkp:A (1.99) BS01 CTS 3.2.1.3 GO:0000272 ... G8JZS4 18848471 MOAD: Ki=59uM
    PDBbind: -logKd/Ki=4.23, Ki=59uM
    56823 2jkp:A (1.99) BS02 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    56824 2jkp:B (1.99) BS01 CTS 3.2.1.3 GO:0000272 ... G8JZS4 18848471 MOAD: Ki=59uM
    56825 2jkp:B (1.99) BS02 CA 3.2.1.3 GO:0000272 ... G8JZS4 18848471
    56826 2jkr:I (2.98) BS01 peptide ? GO:0005515 ... P62743 19140243
    56827 2jkr:S (2.98) BS01 peptide ? GO:0005515 ... P62743 19140243
    56828 2jks:A (1.9) BS01 ZN ? GO:0016020 ... Q95NL6 19155215
    56829 2jks:A (1.9) BS02 ZN ? GO:0016020 ... Q95NL6 19155215
    56830 2jks:A (1.9) BS03 ZN ? GO:0016020 ... Q95NL6 19155215
    56831 2jks:A (1.9) BS04 ZN ? GO:0016020 ... Q95NL6 19155215
    56832 2jks:A (1.9) BS05 ZN ? GO:0016020 ... Q95NL6 19155215
    56833 2jkt:I (3.4) BS01 peptide ? GO:0005515 ... P62743 19140243
    56834 2jkt:S (3.4) BS01 peptide ? GO:0005515 ... P62743 19140243
    56835 2jkv:A (2.532) BS01 NAP 1.1.1.44 GO:0004616 ... P52209 N/A
    56836 2jkv:A (2.532) BS02 NAP 1.1.1.44 GO:0004616 ... P52209 N/A
    56837 2jkv:B (2.532) BS01 NAP 1.1.1.44 GO:0004616 ... P52209 N/A
    56838 2jkv:B (2.532) BS02 NAP 1.1.1.44 GO:0004616 ... P52209 N/A
    56839 2jkv:C (2.532) BS01 NAP 1.1.1.44 GO:0004616 ... P52209 N/A
    56840 2jkv:C (2.532) BS02 NAP 1.1.1.44 GO:0004616 ... P52209 N/A
    56841 2jkv:D (2.532) BS01 NAP 1.1.1.44 GO:0004616 ... P52209 N/A
    56842 2jkv:D (2.532) BS02 NAP 1.1.1.44 GO:0004616 ... P52209 N/A
    56843 2jkv:E (2.532) BS01 NAP 1.1.1.44 GO:0004616 ... P52209 N/A
    56844 2jkv:F (2.532) BS01 NAP 1.1.1.44 GO:0004616 ... P52209 N/A
    56845 2jkw:A (1.6) BS01 CU ? GO:0005507 ... P19567 18939838
    56846 2jkw:B (1.6) BS01 CU ? GO:0005507 ... P19567 18939838
    56847 2jkx:A (1.84) BS01 CA 1.1.3.9 GO:0005576 ... P0CS93 15239055
    56848 2jky:A (2.3) BS01 5GP 2.4.2.8 GO:0000166 ... Q04178 22610485
    56849 2jky:A (2.3) BS02 SO4 2.4.2.8 GO:0000166 ... Q04178 22610485
    56850 2jky:B (2.3) BS01 5GP 2.4.2.8 GO:0000166 ... Q04178 22610485
    56851 2jkz:A (3.45) BS01 5GP 2.4.2.8 GO:0000166 ... Q04178 22610485
    56852 2jkz:A (3.45) BS02 SO4 2.4.2.8 GO:0000166 ... Q04178 22610485
    56853 2jkz:B (3.45) BS01 SO4 2.4.2.8 GO:0000166 ... Q04178 22610485
    56854 2jkz:B (3.45) BS02 5GP 2.4.2.8 GO:0000166 ... Q04178 22610485
    56855 2jkz:C (3.45) BS01 5GP 2.4.2.8 GO:0000166 ... Q04178 22610485
    56856 2jkz:C (3.45) BS02 SO4 2.4.2.8 GO:0000166 ... Q04178 22610485
    56857 2jkz:D (3.45) BS01 SO4 2.4.2.8 GO:0000166 ... Q04178 22610485
    56858 2jkz:D (3.45) BS02 5GP 2.4.2.8 GO:0000166 ... Q04178 22610485
    56859 2jl4:A (2.3) BS01 GSH 5.2.1.4 GO:0003824 ... O86043 18824004
    56860 2jl4:B (2.3) BS01 GSH 5.2.1.4 GO:0003824 ... O86043 18824004
    56861 2jld:A (2.35) BS01 peptide 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 19035373
    56862 2jld:A (2.35) BS02 AG1 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 19035373 MOAD: ic50<0.04nM
    PDBbind: -logKd/Ki=10.40, IC50<0.04nM
    56863 2jld:B (2.35) BS01 AG1 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 19035373 MOAD: ic50<0.04nM
    56864 2jlf:A (3.2) BS01 MN 2.7.7.48 GO:0000166 ... P11124 18940872
    56865 2jlf:B (3.2) BS01 MN 2.7.7.48 GO:0000166 ... P11124 18940872
    56866 2jlg:A (2.8) BS01 dna 2.7.7.48 GO:0000166 ... P11124 18940872
    56867 2jlg:A (2.8) BS02 GTP 2.7.7.48 GO:0000166 ... P11124 18940872
    56868 2jlg:B (2.8) BS01 dna 2.7.7.48 GO:0000166 ... P11124 18940872
    56869 2jlg:B (2.8) BS02 GTP 2.7.7.48 GO:0000166 ... P11124 18940872
    56870 2jlg:C (2.8) BS01 dna 2.7.7.48 GO:0000166 ... P11124 18940872
    56871 2jlg:C (2.8) BS02 GTP 2.7.7.48 GO:0000166 ... P11124 18940872
    56872 2jlg:C (2.8) BS03 GTP 2.7.7.48 GO:0000166 ... P11124 18940872
    56873 2jlg:C (2.8) BS04 MN 2.7.7.48 GO:0000166 ... P11124 18940872
    56874 2jlp:A (1.7) BS01 CU 1.15.1.1 GO:0001666 ... P08294 19289127
    56875 2jlp:A (1.7) BS02 ZN 1.15.1.1 GO:0001666 ... P08294 19289127
    56876 2jlp:B (1.7) BS01 CU 1.15.1.1 GO:0001666 ... P08294 19289127
    56877 2jlp:B (1.7) BS02 ZN 1.15.1.1 GO:0001666 ... P08294 19289127
    56878 2jlp:C (1.7) BS01 CU 1.15.1.1 GO:0001666 ... P08294 19289127
    56879 2jlp:C (1.7) BS02 ZN 1.15.1.1 GO:0001666 ... P08294 19289127
    56880 2jlp:D (1.7) BS01 CU 1.15.1.1 GO:0001666 ... P08294 19289127
    56881 2jlp:D (1.7) BS02 ZN 1.15.1.1 GO:0001666 ... P08294 19289127
    56882 2jmn:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 8951384
    56883 2jn3:A (-1.00) BS01 JN3 ? GO:0005504 ... P80226 17929837
    56884 2jn3:A (-1.00) BS02 JN3 ? GO:0005504 ... P80226 17929837
    56885 2jnd:A (-1.00) BS01 peptide ? GO:0004930 ... Q60748 17360332
    56886 2jnp:A (-1.00) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 17710450
    56887 2jnp:A (-1.00) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 17710450
    56888 2jnp:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    56889 2jnp:A (-1.00) BS04 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    56890 2jnp:A (-1.00) BS05 NGH 3.4.24.17 GO:0004222 ... P08254 17710450 PDBbind: -logKd/Ki=6.89, Ki=130nM
    BindingDB: Ki=132nM, IC50=6500nM
    56891 2jnw:A (-1.00) BS01 peptide ? GO:0003684 ... P07992 17948053
    56892 2jpp:A (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 17704818 PDBbind: Kd=85nM
    56893 2jpp:A (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 17704818 PDBbind: Kd=85nM
    56894 2jpp:B (-1.00) BS01 rna ? GO:0003723 ... P0DPC3 17704818 PDBbind: Kd=85nM
    56895 2jpp:B (-1.00) BS02 rna ? GO:0003723 ... P0DPC3 17704818 PDBbind: Kd=85nM
    56896 2jq7:A (-1.00) BS01 rna ? GO:0003735 ... P29395 17169991
    56897 2jqr:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 18439013
    56898 2jr7:A (-1.00) BS01 ZN ? GO:0002926 ... Q96FX2 18214955
    56899 2jsd:A (-1.00) BS01 CA 3.4.24.- GO:0004222 ... O60882 17869250
    56900 2jsd:A (-1.00) BS02 CA 3.4.24.- GO:0004222 ... O60882 17869250
    56901 2jsd:A (-1.00) BS03 ZN 3.4.24.- GO:0004222 ... O60882 17869250
    56902 2jsd:A (-1.00) BS04 ZN 3.4.24.- GO:0004222 ... O60882 17869250
    56903 2jsd:A (-1.00) BS05 NGH 3.4.24.- GO:0004222 ... O60882 17869250 PDBbind: -logKd/Ki=7.77, Kd=17nM
    56904 2jt5:A (-1.00) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 17710450
    56905 2jt5:A (-1.00) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 17710450
    56906 2jt5:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    56907 2jt5:A (-1.00) BS04 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    56908 2jt5:A (-1.00) BS05 JT5 3.4.24.17 GO:0004222 ... P08254 17710450 PDBbind: -logKd/Ki=7.74, Ki=18nM
    56909 2jt6:A (-1.00) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 17710450
    56910 2jt6:A (-1.00) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 17710450
    56911 2jt6:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    56912 2jt6:A (-1.00) BS04 CA 3.4.24.17 GO:0004222 ... P08254 17710450
    56913 2jt6:A (-1.00) BS05 JT6 3.4.24.17 GO:0004222 ... P08254 17710450 PDBbind: -logKd/Ki=7.60, Ki=25nM
    BindingDB: Kd=110nM, IC50=47nM
    56914 2jti:B (-1.00) BS01 HEC ? GO:0005515 ... P00044 20672804
    56915 2ju0:A (-1.00) BS01 CA ? GO:0000139 ... Q06389 17720810
    56916 2ju0:A (-1.00) BS02 CA ? GO:0000139 ... Q06389 17720810
    56917 2ju0:A (-1.00) BS03 CA ? GO:0000139 ... Q06389 17720810
    56918 2ju4:A (-1.00) BS01 RCY 3.1.4.35 GO:0004114 ... P04972 18230733
    56919 2ju4:A (-1.00) BS02 RCY 3.1.4.35 GO:0004114 ... P04972 18230733
    56920 2ju4:A (-1.00) BS03 RCY 3.1.4.35 GO:0004114 ... P04972 18230733
    56921 2ju4:A (-1.00) BS04 RCY 3.1.4.35 GO:0004114 ... P04972 18230733
    56922 2ju4:A (-1.00) BS05 RCY 3.1.4.35 GO:0004114 ... P04972 18230733
    56923 2ju4:A (-1.00) BS06 RCY 3.1.4.35 GO:0004114 ... P04972 18230733
    56924 2ju4:A (-1.00) BS07 RCY 3.1.4.35 GO:0004114 ... P04972 18230733
    56925 2ju4:A (-1.00) BS08 RCY 3.1.4.35 GO:0004114 ... P04972 18230733
    56926 2ju4:A (-1.00) BS09 RCY 3.1.4.35 GO:0004114 ... P04972 18230733
    56927 2jul:A (-1.00) BS01 CA ? GO:0000122 ... Q9QXT8 18201103
    56928 2jul:A (-1.00) BS02 CA ? GO:0000122 ... Q9QXT8 18201103
    56929 2jum:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 17884811
    56930 2juu:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 17884811
    56931 2juv:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 17884811
    56932 2jv1:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 18040865
    56933 2jw1:A (-1.00) BS01 peptide ? GO:0005515 ... P0A1X2 18940609
    56934 2jwo:A (-1.00) BS01 ZN ? GO:0003677 ... P21784 15964836
    56935 2jwo:A (-1.00) BS02 ZN ? GO:0003677 ... P21784 15964836
    56936 2jx1:A (-1.00) BS01 dna ? GO:0005634 ... Q8CFC2 N/A
    56937 2jx1:A (-1.00) BS02 dna ? GO:0005634 ... Q8CFC2 N/A
    56938 2jxm:A (-1.00) BS01 CU ? GO:0005507 ... P50057 18201089
    56939 2jxm:A (-1.00) BS02 HEC ? GO:0005507 ... P50057 18201089
    56940 2jxm:B (-1.00) BS01 HEC ? GO:0005506 ... Q8RN59 18201089
    56941 2jxr:A (2.4) BS01 BMA 3.4.23.25 GO:0000324 ... P07267 9135120
    56942 2jxr:A (2.4) BS02 2Z3 3.4.23.25 GO:0000324 ... P07267 9135120 MOAD: Ki=90nM
    PDBbind: -logKd/Ki=7.05, Ki=90nM
    56943 2jyd:A (-1.00) BS01 ZN ? GO:0005634 ... Q8CFC2 18073212
    56944 2jzi:A (-1.00) BS01 peptide ? GO:0000086 ... P0DP23 N/A
    56945 2jzi:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 N/A
    56946 2jzi:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 N/A
    56947 2jzi:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 N/A
    56948 2jzi:A (-1.00) BS05 CA ? GO:0000086 ... P0DP23 N/A
    56949 2k00:A (-1.00) BS01 peptide ? GO:0005856 ... P54939 18638481
    56950 2k0a:A (-1.00) BS01 ZN ? GO:0000245 ... Q06835 18621724
    56951 2k0a:A (-1.00) BS02 ZN ? GO:0000245 ... Q06835 18621724
    56952 2k0a:A (-1.00) BS03 ZN ? GO:0000245 ... Q06835 18621724
    56953 2k0e:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 18462678
    56954 2k0e:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 18462678
    56955 2k0e:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 18462678
    56956 2k0e:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 18462678
    56957 2k0f:A (-1.00) BS01 peptide ? GO:0000086 ... P0DP23 18462678
    56958 2k0f:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 18462678
    56959 2k0f:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 18462678
    56960 2k0f:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 18462678
    56961 2k0f:A (-1.00) BS05 CA ? GO:0000086 ... P0DP23 18462678
    56962 2k0j:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 19317469
    56963 2k0j:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 19317469
    56964 2k0j:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 19317469
    56965 2k0x:A (-1.00) BS01 PNS ? GO:0000035 ... Q02054 18770515 PDBbind: -logKd/Ki=5.68, Kd=2.1uM
    56966 2k2f:A (-1.00) BS01 peptide ? GO:0000122 ... P35467 18650434
    56967 2k2f:A (-1.00) BS02 CA ? GO:0000122 ... P35467 18650434
    56968 2k2f:A (-1.00) BS03 CA ? GO:0000122 ... P35467 18650434
    56969 2k2f:B (-1.00) BS01 peptide ? GO:0000122 ... P35467 18650434
    56970 2k2f:B (-1.00) BS02 CA ? GO:0000122 ... P35467 18650434
    56971 2k2f:B (-1.00) BS03 CA ? GO:0000122 ... P35467 18650434
    56972 2k2g:A (-1.00) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 18425585
    56973 2k2g:A (-1.00) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 18425585
    56974 2k2g:A (-1.00) BS03 DSV 3.4.24.65 GO:0004222 ... P39900 18425585 PDBbind: -logKd/Ki=8.12, Kd=7.5nM
    56975 2k3h:A (-1.00) BS01 CA ? GO:0016020 ... P47708 18945677
    56976 2k3h:A (-1.00) BS02 CA ? GO:0016020 ... P47708 18945677
    56977 2k3m:A (-1.00) BS01 MTN ? GO:0016020 ... O06796 19177358
    56978 2k3m:A (-1.00) BS02 MTN ? GO:0016020 ... O06796 19177358
    56979 2k3r:A (-1.00) BS01 ZN 3.1.26.5 GO:0001682 ... Q8U0H6 18922021
    56980 2k3v:A (-1.00) BS01 HEC ? GO:0042597 ... O33731 18950243
    56981 2k3v:A (-1.00) BS02 HEC ? GO:0042597 ... O33731 18950243
    56982 2k3v:A (-1.00) BS03 HEC ? GO:0042597 ... O33731 18950243
    56983 2k3v:A (-1.00) BS04 HEC ? GO:0042597 ... O33731 18950243
    56984 2k4w:A (-1.00) BS01 CU1 1.15.1.1 GO:0004784 ... Q704S6 19006322
    56985 2k4w:A (-1.00) BS02 ZN 1.15.1.1 GO:0004784 ... Q704S6 19006322
    56986 2k4x:A (-1.00) BS01 ZN ? GO:0003735 ... Q9HJ78 N/A
    56987 2k5u:A (-1.00) BS01 GDP 3.6.5.2 GO:0003924 ... P11076 19141284
    56988 2k61:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 19317469
    56989 2k61:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 19317469
    56990 2k61:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 19317469
    56991 2k62:A (-1.00) BS01 ITL ? GO:0005504 ... P80226 18939814 PDBbind: -logKd/Ki=4.70, Kd=20uM
    56992 2k74:A (-1.00) BS01 UQ2 ? GO:0005515 ... P0A6M2 18922471
    56993 2k78:A (-1.00) BS01 ZNH ? GO:0009274 ... Q7A151 18715872
    56994 2k7l:A (-1.00) BS01 peptide ? GO:0003677 ... P35269 19215094
    56995 2k7o:A (-1.00) BS01 CA ? GO:0001726 ... P04631 18949447
    56996 2k7o:A (-1.00) BS02 CA ? GO:0001726 ... P04631 18949447
    56997 2k7o:B (-1.00) BS01 CA ? GO:0001726 ... P04631 18949447
    56998 2k7o:B (-1.00) BS02 CA ? GO:0001726 ... P04631 18949447
    56999 2k7w:A (-1.00) BS01 peptide ? GO:0001541 ... Q07812 18948948
    57000 2k8d:A (-1.00) BS01 ZN 1.8.4.12 GO:0005737 ... O26807 21219456

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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