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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    56201 2jbl:M (2.4) BS08 NS5 ? GO:0009772 ... P06010 17337272
    56202 2jbs:A (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56203 2jbs:A (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56204 2jbs:B (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56205 2jbs:B (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56206 2jbs:C (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56207 2jbs:C (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56208 2jbs:D (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56209 2jbs:D (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56210 2jbt:A (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56211 2jbt:A (2.8) BS02 4HP 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56212 2jbt:A (2.8) BS03 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56213 2jbt:B (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56214 2jbt:B (2.8) BS02 4HP 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56215 2jbt:B (2.8) BS03 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56216 2jbt:C (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56217 2jbt:C (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56218 2jbt:C (2.8) BS03 4HP 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56219 2jbt:D (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56220 2jbt:D (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56221 2jbt:D (2.8) BS03 4HP 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    56222 2jbu:A (3.0) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 17613531
    56223 2jbu:B (3.0) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 17613531
    56224 2jbz:A (1.62) BS01 COA 2.7.8.7 GO:0000287 ... O86785 21595442 MOAD: Kd=0.38uM
    56225 2jc3:A (2.3) BS01 PLP 2.5.1.47 GO:0004124 ... P29848 17583914
    56226 2jc3:B (2.3) BS01 PLP 2.5.1.47 GO:0004124 ... P29848 17583914
    56227 2jc3:C (2.3) BS01 PLP 2.5.1.47 GO:0004124 ... P29848 17583914
    56228 2jc3:D (2.3) BS01 PLP 2.5.1.47 GO:0004124 ... P29848 17583914
    56229 2jc3:E (2.3) BS01 PLP 2.5.1.47 GO:0004124 ... P29848 17583914
    56230 2jc3:F (2.3) BS01 PLP 2.5.1.47 GO:0004124 ... P29848 17583914
    56231 2jc3:G (2.3) BS01 PLP 2.5.1.47 GO:0004124 ... P29848 17583914
    56232 2jc3:H (2.3) BS01 PLP 2.5.1.47 GO:0004124 ... P29848 17583914
    56233 2jc3:H (2.3) BS02 PLP 2.5.1.47 GO:0004124 ... P29848 17583914
    56234 2jc9:A (1.5) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 17405878
    56235 2jc9:A (1.5) BS02 ADN 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 17405878
    56236 2jc9:A (1.5) BS03 ADN 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 17405878
    56237 2jcj:A (2.02) BS01 UDP 2.4.1.87 GO:0005975 ... P14769 17493636
    56238 2jcj:A (2.02) BS02 MN 2.4.1.87 GO:0005975 ... P14769 17493636
    56239 2jck:A (1.8) BS01 UDP 2.4.1.87 GO:0005975 ... P14769 17493636
    56240 2jck:A (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 17493636
    56241 2jck:A (1.8) BS03 MN 2.4.1.87 GO:0005975 ... P14769 17493636
    56242 2jcm:A (2.15) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 17405878
    56243 2jcq:A (1.25) BS01 BDP ? GO:0005540 ... P15379 17293874
    56244 2jcq:A (1.25) BS02 BDP ? GO:0005540 ... P15379 17293874
    56245 2jcr:A (2.0) BS01 BDP ? GO:0005540 ... P15379 17293874
    56246 2jcr:A (2.0) BS02 BDP ? GO:0005540 ... P15379 17293874
    56247 2jcs:A (2.5) BS01 TTP 2.7.1.145 GO:0004136 ... Q9XZT6 17302737
    56248 2jcs:A (2.5) BS02 MG 2.7.1.145 GO:0004136 ... Q9XZT6 17302737
    56249 2jcs:B (2.5) BS01 TTP 2.7.1.145 GO:0004136 ... Q9XZT6 17302737
    56250 2jcs:B (2.5) BS02 MG 2.7.1.145 GO:0004136 ... Q9XZT6 17302737
    56251 2jcw:A (1.7) BS01 CU1 1.15.1.1 GO:0004784 ... P00445 10026301
    56252 2jcw:A (1.7) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    56253 2jd6:0 (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56254 2jd6:1 (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56255 2jd6:2 (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56256 2jd6:3 (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56257 2jd6:4 (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56258 2jd6:5 (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56259 2jd6:6 (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56260 2jd6:7 (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56261 2jd6:8 (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56262 2jd6:9 (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56263 2jd6:A (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56264 2jd6:B (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56265 2jd6:C (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56266 2jd6:D (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56267 2jd6:E (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56268 2jd6:F (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56269 2jd6:G (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56270 2jd6:H (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56271 2jd6:I (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56272 2jd6:J (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56273 2jd6:K (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56274 2jd6:L (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56275 2jd6:M (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56276 2jd6:N (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56277 2jd6:O (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56278 2jd6:P (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56279 2jd6:Q (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56280 2jd6:R (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56281 2jd6:S (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56282 2jd6:T (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56283 2jd6:U (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56284 2jd6:V (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56285 2jd6:W (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56286 2jd6:X (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56287 2jd6:Y (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56288 2jd6:Z (2.75) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56289 2jd7:0 (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56290 2jd7:0 (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56291 2jd7:0 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56292 2jd7:1 (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56293 2jd7:1 (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56294 2jd7:1 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56295 2jd7:2 (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56296 2jd7:2 (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56297 2jd7:2 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56298 2jd7:3 (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56299 2jd7:3 (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56300 2jd7:3 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56301 2jd7:4 (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56302 2jd7:4 (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56303 2jd7:4 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56304 2jd7:5 (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56305 2jd7:5 (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56306 2jd7:5 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56307 2jd7:6 (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56308 2jd7:6 (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56309 2jd7:6 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56310 2jd7:7 (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56311 2jd7:7 (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56312 2jd7:7 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56313 2jd7:8 (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56314 2jd7:8 (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56315 2jd7:8 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56316 2jd7:9 (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56317 2jd7:9 (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56318 2jd7:9 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56319 2jd7:A (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56320 2jd7:A (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56321 2jd7:A (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56322 2jd7:B (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56323 2jd7:B (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56324 2jd7:B (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56325 2jd7:C (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56326 2jd7:C (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56327 2jd7:C (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56328 2jd7:D (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56329 2jd7:D (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56330 2jd7:D (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56331 2jd7:E (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56332 2jd7:E (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56333 2jd7:E (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56334 2jd7:F (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56335 2jd7:F (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56336 2jd7:F (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56337 2jd7:G (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56338 2jd7:G (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56339 2jd7:G (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56340 2jd7:H (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56341 2jd7:H (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56342 2jd7:H (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56343 2jd7:I (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56344 2jd7:I (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56345 2jd7:I (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56346 2jd7:J (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56347 2jd7:J (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56348 2jd7:J (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56349 2jd7:K (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56350 2jd7:K (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56351 2jd7:K (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56352 2jd7:L (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56353 2jd7:L (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56354 2jd7:L (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56355 2jd7:M (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56356 2jd7:M (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56357 2jd7:M (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56358 2jd7:N (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56359 2jd7:N (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56360 2jd7:N (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56361 2jd7:O (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56362 2jd7:O (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56363 2jd7:O (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56364 2jd7:P (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56365 2jd7:P (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56366 2jd7:P (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56367 2jd7:Q (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56368 2jd7:Q (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56369 2jd7:Q (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56370 2jd7:R (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56371 2jd7:R (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56372 2jd7:R (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56373 2jd7:S (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56374 2jd7:S (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56375 2jd7:S (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56376 2jd7:T (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56377 2jd7:T (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56378 2jd7:T (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56379 2jd7:U (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56380 2jd7:U (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56381 2jd7:U (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56382 2jd7:V (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56383 2jd7:V (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56384 2jd7:V (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56385 2jd7:W (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56386 2jd7:W (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56387 2jd7:W (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56388 2jd7:X (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56389 2jd7:X (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56390 2jd7:X (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56391 2jd7:Y (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56392 2jd7:Y (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56393 2jd7:Y (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56394 2jd7:Z (2.8) BS01 FE ? GO:0004322 ... Q8U2T8 17541801
    56395 2jd7:Z (2.8) BS02 FE ? GO:0004322 ... Q8U2T8 17541801
    56396 2jd7:Z (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56397 2jd8:0 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56398 2jd8:0 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56399 2jd8:0 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56400 2jd8:1 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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