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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    55401 2iy4:D (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55402 2iy4:E (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55403 2iy4:E (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55404 2iy4:F (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55405 2iy4:F (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55406 2iy4:G (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55407 2iy4:G (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55408 2iy4:H (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55409 2iy4:I (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55410 2iy4:I (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55411 2iy4:J (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55412 2iy4:K (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55413 2iy4:L (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55414 2iy4:M (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55415 2iy4:M (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55416 2iy4:N (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55417 2iy4:N (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55418 2iy4:N (2.31) BS03 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55419 2iy4:O (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55420 2iy4:P (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55421 2iy4:Q (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55422 2iy4:R (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55423 2iy4:R (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55424 2iy4:S (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55425 2iy4:T (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55426 2iy4:T (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55427 2iy4:U (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55428 2iy4:V (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55429 2iy4:V (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55430 2iy4:X (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55431 2iy4:X (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55432 2iy4:Y (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55433 2iy4:Y (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    55434 2iy5:A (3.1) BS01 rna 6.1.1.20 GO:0000049 ... Q5SGX2 16939209
    55435 2iy5:A (3.1) BS02 FYA 6.1.1.20 GO:0000049 ... Q5SGX2 16939209
    55436 2iy5:B (3.1) BS01 rna 6.1.1.20 GO:0000049 ... Q5SGX1 16939209
    55437 2iy5:B (3.1) BS02 MG 6.1.1.20 GO:0000049 ... Q5SGX1 16939209
    55438 2iye:A (2.6) BS01 SO4 3.6.3.10 GO:0000166 ... Q97UU7 17434529
    55439 2iye:C (2.6) BS01 SO4 3.6.3.10 GO:0000166 ... Q97UU7 17434529
    55440 2iyk:A (2.95) BS01 ZN 3.6.4.12
    3.6.4.13    		 GO:0000184 ... Q92900 16931876
    55441 2iyk:A (2.95) BS02 ZN 3.6.4.12
    3.6.4.13    		 GO:0000184 ... Q92900 16931876
    55442 2iyk:A (2.95) BS03 ZN 3.6.4.12
    3.6.4.13    		 GO:0000184 ... Q92900 16931876
    55443 2iyk:B (2.95) BS01 ZN 3.6.4.12
    3.6.4.13    		 GO:0000184 ... Q92900 16931876
    55444 2iyk:B (2.95) BS02 ZN 3.6.4.12
    3.6.4.13    		 GO:0000184 ... Q92900 16931876
    55445 2iyk:B (2.95) BS03 ZN 3.6.4.12
    3.6.4.13    		 GO:0000184 ... Q92900 16931876
    55446 2iyl:D (2.1) BS01 GDP 3.6.5.4 GO:0003924 ... P83749 17186523
    55447 2iyo:A (2.4) BS01 6PG 1.1.1.44 GO:0004616 ... P96789 17222187
    55448 2iyp:A (2.79) BS01 NAP 1.1.1.44 GO:0004616 ... P96789 17222187
    55449 2iyp:A (2.79) BS02 5RP 1.1.1.44 GO:0004616 ... P96789 17222187
    55450 2iyp:B (2.79) BS01 5RP 1.1.1.44 GO:0004616 ... P96789 17222187
    55451 2iyp:B (2.79) BS02 A2P 1.1.1.44 GO:0004616 ... P96789 17222187
    55452 2iyp:C (2.79) BS01 A2P 1.1.1.44 GO:0004616 ... P96789 17222187
    55453 2iyq:A (1.8) BS01 SKM 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55454 2iyq:A (1.8) BS02 ADP 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55455 2iyr:A (1.98) BS01 SKM 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55456 2iyr:B (1.98) BS01 SKM 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55457 2iys:A (1.4) BS01 SKM 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55458 2iyu:A (1.85) BS01 ADP 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55459 2iyv:A (1.35) BS01 ADP 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55460 2iyw:A (1.85) BS01 ATP 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55461 2iyx:A (1.49) BS01 SKM 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55462 2iyy:A (1.62) BS01 S3P 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55463 2iyy:A (1.62) BS02 PO4 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55464 2iyy:A (1.62) BS03 MG 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55465 2iyz:A (2.3) BS01 S3P 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55466 2iyz:A (2.3) BS02 ADP 2.7.1.71 GO:0000287 ... P9WPY3 17020768
    55467 2iz0:A (2.6) BS01 NAP 1.1.1.44 GO:0004616 ... P96789 17222187
    55468 2iz0:A (2.6) BS02 RES 1.1.1.44 GO:0004616 ... P96789 17222187
    55469 2iz0:B (2.6) BS01 RES 1.1.1.44 GO:0004616 ... P96789 17222187
    55470 2iz0:B (2.6) BS02 ATR 1.1.1.44 GO:0004616 ... P96789 17222187
    55471 2iz0:C (2.6) BS01 ATR 1.1.1.44 GO:0004616 ... P96789 17222187
    55472 2iz1:A (2.3) BS01 ATR 1.1.1.44 GO:0004616 ... P96789 17222187
    55473 2iz1:A (2.3) BS02 RES 1.1.1.44 GO:0004616 ... P96789 17222187
    55474 2iz1:B (2.3) BS01 RES 1.1.1.44 GO:0004616 ... P96789 17222187
    55475 2iz1:B (2.3) BS02 ATR 1.1.1.44 GO:0004616 ... P96789 17222187
    55476 2iz1:C (2.3) BS01 ATR 1.1.1.44 GO:0004616 ... P96789 17222187
    55477 2iz8:A (3.3) BS01 rna ? GO:0003723 ... P03612 12060685
    55478 2iz8:B (3.3) BS01 rna ? GO:0003723 ... P03612 12060685
    55479 2iz8:C (3.3) BS01 rna ? GO:0003723 ... P03612 12060685
    55480 2iz9:A (2.85) BS01 rna ? GO:0003723 ... P03612 11095669
    55481 2iz9:C (2.85) BS01 rna ? GO:0003723 ... P03612 11095669
    55482 2iz9:C (2.85) BS02 rna ? GO:0003723 ... P03612 11095669
    55483 2izm:A (2.7) BS01 rna ? GO:0003723 ... P03612 12060685
    55484 2izm:B (2.7) BS01 rna ? GO:0003723 ... P03612 12060685
    55485 2izm:C (2.7) BS01 rna ? GO:0003723 ... P03612 12060685
    55486 2izn:A (2.56) BS01 rna ? GO:0003723 ... P03612 12060685
    55487 2izn:B (2.56) BS01 rna ? GO:0003723 ... P03612 12060685
    55488 2izn:C (2.56) BS01 rna ? GO:0003723 ... P03612 12060685
    55489 2izz:A (1.95) BS01 NAD 1.5.1.2 GO:0004735 ... P32322 N/A
    55490 2izz:B (1.95) BS01 NAD 1.5.1.2 GO:0004735 ... P32322 N/A
    55491 2izz:C (1.95) BS01 NAD 1.5.1.2 GO:0004735 ... P32322 N/A
    55492 2izz:D (1.95) BS01 NAD 1.5.1.2 GO:0004735 ... P32322 N/A
    55493 2izz:E (1.95) BS01 NAD 1.5.1.2 GO:0004735 ... P32322 N/A
    55494 2j0b:A (2.1) BS01 MN 2.4.1.222 GO:0016020 ... O09008 16964258
    55495 2j0b:A (2.1) BS02 UDP 2.4.1.222 GO:0016020 ... O09008 16964258
    55496 2j0d:A (2.75) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 16954191
    55497 2j0d:A (2.75) BS02 ERY 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 16954191 BindingDB: IC50=190nM
    55498 2j0d:B (2.75) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 16954191
    55499 2j0e:A (2.1) BS01 ZN 3.1.1.31 GO:0005737 ... Q9GRG6 17196981
    55500 2j0e:B (2.1) BS01 ZN 3.1.1.31 GO:0005737 ... Q9GRG6 17196981
    55501 2j0f:A (2.31) BS01 TDR 2.4.2.4 GO:0000002 ... P19971 16803458
    55502 2j0f:B (2.31) BS01 TDR 2.4.2.4 GO:0000002 ... P19971 16803458
    55503 2j0f:C (2.31) BS01 TDR 2.4.2.4 GO:0000002 ... P19971 16803458
    55504 2j0j:A (2.8) BS01 4ST 2.7.10.2 GO:0004672 ... Q00944 17574028
    55505 2j0k:A (3.0) BS01 4ST 2.7.10.2 GO:0004672 ... Q00944 17574028
    55506 2j0k:B (3.0) BS01 4ST 2.7.10.2 GO:0004672 ... Q00944 17574028
    55507 2j0q:A (3.2) BS01 rna 3.6.4.13 GO:0000184 ... P38919 16923391
    55508 2j0q:A (3.2) BS02 MG 3.6.4.13 GO:0000184 ... P38919 16923391
    55509 2j0q:A (3.2) BS03 ANP 3.6.4.13 GO:0000184 ... P38919 16923391
    55510 2j0q:B (3.2) BS01 rna 3.6.4.13 GO:0000184 ... P38919 16923391
    55511 2j0q:B (3.2) BS02 MG 3.6.4.13 GO:0000184 ... P38919 16923391
    55512 2j0q:B (3.2) BS03 ANP 3.6.4.13 GO:0000184 ... P38919 16923391
    55513 2j0s:A (2.21) BS01 rna 3.6.4.13 GO:0000184 ... P38919 16923391
    55514 2j0s:A (2.21) BS02 ANP 3.6.4.13 GO:0000184 ... P38919 16923391
    55515 2j0t:A (2.54) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 17050530
    55516 2j0t:A (2.54) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 17050530
    55517 2j0t:A (2.54) BS03 CA 3.4.24.7 GO:0004222 ... P03956 17050530
    55518 2j0t:A (2.54) BS04 CA 3.4.24.7 GO:0004222 ... P03956 17050530
    55519 2j0t:A (2.54) BS05 CA 3.4.24.7 GO:0004222 ... P03956 17050530
    55520 2j0t:B (2.54) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 17050530
    55521 2j0t:B (2.54) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 17050530
    55522 2j0t:B (2.54) BS03 CA 3.4.24.7 GO:0004222 ... P03956 17050530
    55523 2j0t:B (2.54) BS04 CA 3.4.24.7 GO:0004222 ... P03956 17050530
    55524 2j0t:B (2.54) BS05 CA 3.4.24.7 GO:0004222 ... P03956 17050530
    55525 2j0t:C (2.54) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 17050530
    55526 2j0t:C (2.54) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 17050530
    55527 2j0t:C (2.54) BS03 CA 3.4.24.7 GO:0004222 ... P03956 17050530
    55528 2j0t:C (2.54) BS04 CA 3.4.24.7 GO:0004222 ... P03956 17050530
    55529 2j0t:C (2.54) BS05 CA 3.4.24.7 GO:0004222 ... P03956 17050530
    55530 2j0u:A (3.0) BS01 peptide 3.6.4.13 GO:0000184 ... P38919 16923391
    55531 2j0v:A (1.78) BS01 GDP ? GO:0003924 ... O82480 17005216
    55532 2j0v:A (1.78) BS02 MG ? GO:0003924 ... O82480 17005216
    55533 2j0v:A (1.78) BS03 GDP ? GO:0003924 ... O82480 17005216
    55534 2j0v:B (1.78) BS01 GDP ? GO:0003924 ... O82480 17005216
    55535 2j0v:B (1.78) BS02 GDP ? GO:0003924 ... O82480 17005216
    55536 2j0v:B (1.78) BS03 MG ? GO:0003924 ... O82480 17005216
    55537 2j0v:C (1.78) BS01 GDP ? GO:0003924 ... O82480 17005216
    55538 2j0v:C (1.78) BS02 MG ? GO:0003924 ... O82480 17005216
    55539 2j0v:C (1.78) BS03 GDP ? GO:0003924 ... O82480 17005216
    55540 2j0v:D (1.78) BS01 GDP ? GO:0003924 ... O82480 17005216
    55541 2j0v:D (1.78) BS02 GDP ? GO:0003924 ... O82480 17005216
    55542 2j0v:D (1.78) BS03 MG ? GO:0003924 ... O82480 17005216
    55543 2j0w:A (2.5) BS01 ASP 2.7.2.4 GO:0004072 ... P08660 16905770
    55544 2j0w:A (2.5) BS02 ADP 2.7.2.4 GO:0004072 ... P08660 16905770
    55545 2j0x:A (2.8) BS01 ASP 2.7.2.4 GO:0004072 ... P08660 16905770
    55546 2j0x:A (2.8) BS02 LYS 2.7.2.4 GO:0004072 ... P08660 16905770
    55547 2j0x:A (2.8) BS03 LYS 2.7.2.4 GO:0004072 ... P08660 16905770
    55548 2j0x:B (2.8) BS01 LYS 2.7.2.4 GO:0004072 ... P08660 16905770
    55549 2j0x:B (2.8) BS02 LYS 2.7.2.4 GO:0004072 ... P08660 16905770
    55550 2j14:A (2.8) BS01 GNI ? GO:0003677 ... Q03181 16931011 BindingDB: EC50=70nM
    55551 2j14:B (2.8) BS01 GNI ? GO:0003677 ... Q03181 16931011 BindingDB: EC50=70nM
    55552 2j1l:A (2.5) BS01 GDP 3.6.5.2 GO:0000139 ... O00212 N/A
    55553 2j1n:A (2.0) BS01 MG ? GO:0001618 ... P06996 16949612
    55554 2j1n:B (2.0) BS01 MG ? GO:0001618 ... P06996 16949612
    55555 2j1n:C (2.0) BS01 MG ? GO:0001618 ... P06996 16949612
    55556 2j1w:A (1.8) BS01 ZN ? GO:0000976 ... P04637 17015838
    55557 2j1w:B (1.8) BS01 ZN ? GO:0000976 ... P04637 17015838
    55558 2j1x:A (1.65) BS01 ZN ? GO:0000976 ... P04637 17015838
    55559 2j1x:B (1.65) BS01 ZN ? GO:0000976 ... P04637 17015838
    55560 2j1y:A (1.69) BS01 ZN ? GO:0000976 ... P04637 17015838
    55561 2j1y:B (1.69) BS01 ZN ? GO:0000976 ... P04637 17015838
    55562 2j1y:C (1.69) BS01 ZN ? GO:0000976 ... P04637 17015838
    55563 2j1y:D (1.69) BS01 ZN ? GO:0000976 ... P04637 17015838
    55564 2j1z:A (1.8) BS01 ZN ? GO:0000976 ... P04637 17015838
    55565 2j1z:B (1.8) BS01 ZN ? GO:0000976 ... P04637 17015838
    55566 2j20:A (1.8) BS01 ZN ? GO:0000976 ... P04637 17015838
    55567 2j20:B (1.8) BS01 ZN ? GO:0000976 ... P04637 17015838
    55568 2j21:A (1.6) BS01 ZN ? GO:0000976 ... P04637 17015838
    55569 2j21:B (1.6) BS01 ZN ? GO:0000976 ... P04637 17015838
    55570 2j27:A (1.15) BS01 PGA 5.3.1.1 GO:0004807 ... P04789 17176070 MOAD: Ki=0.3mM
    PDBbind: -logKd/Ki=3.52, Ki=0.3mM
    55571 2j27:B (1.15) BS01 PGA 5.3.1.1 GO:0004807 ... P04789 17176070 MOAD: Ki=0.3mM
    PDBbind: -logKd/Ki=3.52, Ki=0.3mM
    55572 2j28:0 (9.5) BS01 rna ? GO:0000027 ... P0A7N4 17086193
    55573 2j28:1 (9.5) BS01 rna ? GO:0000027 ... P0A7N9 17086193
    55574 2j28:2 (9.5) BS01 rna ? GO:0002181 ... P0A7P5 17086193
    55575 2j28:3 (9.5) BS01 rna ? GO:0002181 ... P0A7Q1 17086193
    55576 2j28:4 (9.5) BS01 rna ? GO:0002181 ... P0A7Q6 17086193
    55577 2j28:9 (9.5) BS01 peptide 3.6.5.4 GO:0003723 ... P0AGD7 17086193
    55578 2j28:9 (9.5) BS02 rna 3.6.5.4 GO:0003723 ... P0AGD7 17086193
    55579 2j28:9 (9.5) BS03 rna 3.6.5.4 GO:0003723 ... P0AGD7 17086193
    55580 2j28:C (9.5) BS01 rna ? GO:0000027 ... P60422 17086193
    55581 2j28:D (9.5) BS01 rna ? GO:0000027 ... P60438 17086193
    55582 2j28:E (9.5) BS01 rna ? GO:0001070 ... P60723 17086193
    55583 2j28:F (9.5) BS01 rna ? GO:0000027 ... P62399 17086193
    55584 2j28:F (9.5) BS02 rna ? GO:0000027 ... P62399 17086193
    55585 2j28:G (9.5) BS01 rna ? GO:0000027 ... P0AG55 17086193
    55586 2j28:H (9.5) BS01 rna ? GO:0002181 ... P0A7R1 17086193
    55587 2j28:I (9.5) BS01 rna ? GO:0000027 ... P0A7J7 17086193
    55588 2j28:J (9.5) BS01 rna ? GO:0002181 ... P0AA10 17086193
    55589 2j28:K (9.5) BS01 rna ? GO:0002181 ... P0ADY3 17086193
    55590 2j28:L (9.5) BS01 rna ? GO:0002181 ... P02413 17086193
    55591 2j28:M (9.5) BS01 rna ? GO:0000027 ... P0ADY7 17086193
    55592 2j28:N (9.5) BS01 rna ? GO:0000027 ... P0AG44 17086193
    55593 2j28:O (9.5) BS01 rna ? GO:0002181 ... P0C018 17086193
    55594 2j28:O (9.5) BS02 rna ? GO:0002181 ... P0C018 17086193
    55595 2j28:P (9.5) BS01 rna ? GO:0000027 ... P0A7K6 17086193
    55596 2j28:Q (9.5) BS01 rna ? GO:0000027 ... P0A7L3 17086193
    55597 2j28:R (9.5) BS01 rna ? GO:0002181 ... P0AG48 17086193
    55598 2j28:S (9.5) BS01 rna ? GO:0002181 ... P61175 17086193
    55599 2j28:T (9.5) BS01 rna ? GO:0000027 ... P0ADZ0 17086193
    55600 2j28:U (9.5) BS01 rna ? GO:0000027 ... P60624 17086193
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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