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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    53601 2hhe:A (2.2) BS01 HEM ? GO:0004601 ... P69905 7929044
    53602 2hhe:B (2.2) BS01 HEM ? GO:0004601 ... P68871 7929044
    53603 2hhe:C (2.2) BS01 HEM ? GO:0004601 ... P69905 7929044
    53604 2hhe:D (2.2) BS01 HEM ? GO:0004601 ... P68871 7929044
    53605 2hhf:A (1.8) BS01 PLP 2.6.1.42 GO:0003824 ... O15382 17050531
    53606 2hhf:B (1.8) BS01 PLP 2.6.1.42 GO:0003824 ... O15382 17050531
    53607 2hhh:B (3.35) BS01 rna ? GO:0003735 ... P80371 16998488
    53608 2hhh:C (3.35) BS01 rna ? GO:0003676 ... P80372 16998488
    53609 2hhh:D (3.35) BS01 rna ? GO:0003723 ... P80373 16998488
    53610 2hhh:E (3.35) BS01 rna ? GO:0003723 ... Q5SHQ5 16998488
    53611 2hhh:F (3.35) BS01 rna ? GO:0003735 ... Q5SLP8 16998488
    53612 2hhh:G (3.35) BS01 rna ? GO:0000028 ... P17291 16998488
    53613 2hhh:H (3.35) BS01 rna ? GO:0003735 ... P0DOY9 16998488
    53614 2hhh:I (3.35) BS01 rna ? GO:0000049 ... P80374 16998488
    53615 2hhh:J (3.35) BS01 rna ? GO:0000049 ... Q5SHN7 16998488
    53616 2hhh:K (3.35) BS01 rna ? GO:0003735 ... P80376 16998488
    53617 2hhh:L (3.35) BS01 rna ? GO:0000049 ... Q5SHN3 16998488
    53618 2hhh:M (3.35) BS01 rna ? GO:0000049 ... P80377 16998488
    53619 2hhh:N (3.35) BS01 rna ? GO:0003735 ... P0DOY6 16998488
    53620 2hhh:O (3.35) BS01 rna ? GO:0003735 ... Q5SJ76 16998488
    53621 2hhh:P (3.35) BS01 rna ? GO:0003735 ... Q5SJH3 16998488
    53622 2hhh:Q (3.35) BS01 rna ? GO:0003735 ... P0DOY7 16998488
    53623 2hhh:R (3.35) BS01 rna ? GO:0003735 ... Q5SLQ0 16998488
    53624 2hhh:S (3.35) BS01 rna ? GO:0000028 ... Q5SHP2 16998488
    53625 2hhh:T (3.35) BS01 rna ? GO:0003723 ... P80380 16998488
    53626 2hhj:A (1.5) BS01 DG2 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P07738 17052986
    53627 2hhj:B (1.5) BS01 DG2 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P07738 17052986
    53628 2hhk:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 17315985
    53629 2hhk:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 17315985
    53630 2hhk:L (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 17315985
    53631 2hhk:L (2.5) BS04 U10 ? GO:0009772 ... P0C0Y8 17315985
    53632 2hhk:L (2.5) BS05 FE ? GO:0009772 ... P0C0Y8 17315985
    53633 2hhk:L (2.5) BS06 BCL ? GO:0009772 ... P0C0Y8 17315985
    53634 2hhk:L (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 17315985
    53635 2hhk:L (2.5) BS08 U10 ? GO:0009772 ... P0C0Y8 17315985
    53636 2hhk:L (2.5) BS09 PGK ? GO:0009772 ... P0C0Y8 17315985
    53637 2hhk:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 17315985
    53638 2hhk:M (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 17315985
    53639 2hhk:M (2.5) BS03 FE ? GO:0009772 ... P0C0Y9 17315985
    53640 2hhk:M (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 17315985
    53641 2hhk:M (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 17315985
    53642 2hhk:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 17315985
    53643 2hhk:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 17315985
    53644 2hhk:M (2.5) BS08 PGK ? GO:0009772 ... P0C0Y9 17315985
    53645 2hhm:A (2.1) BS01 SO4 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 1332026
    53646 2hhm:B (2.1) BS01 SO4 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 1332026
    53647 2hho:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 16762918
    53648 2hi2:A (2.3) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53649 2hi4:A (1.95) BS01 HEM 1.14.14.1
    4.2.1.152    		 GO:0004497 ... P05177 17311915
    53650 2hi4:A (1.95) BS02 BHF 1.14.14.1
    4.2.1.152    		 GO:0004497 ... P05177 17311915 MOAD: Ki=25nM
    BindingDB: IC50=30nM
    53651 2hi7:B (3.7) BS01 UQ1 1.8.5.- GO:0005515 ... P0A6M2 17110337
    53652 2hil:A (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53653 2hil:B (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53654 2hil:C (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53655 2hil:D (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53656 2hil:E (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53657 2hil:F (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53658 2hil:G (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53659 2hil:H (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53660 2hil:I (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53661 2hil:J (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53662 2hil:K (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53663 2hil:L (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53664 2hil:M (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53665 2hil:N (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53666 2hil:O (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53667 2hil:P (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53668 2hil:Q (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53669 2hil:R (12.5) BS01 DT6 ? GO:0007155 ... P02974 16949362
    53670 2him:A (1.82) BS01 ASP 3.5.1.1 GO:0004067 ... P0A962 17451745
    53671 2him:A (1.82) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    53672 2him:A (1.82) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    53673 2him:B (1.82) BS01 ASP 3.5.1.1 GO:0004067 ... P0A962 17451745
    53674 2him:B (1.82) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    53675 2him:B (1.82) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    53676 2him:C (1.82) BS01 ASP 3.5.1.1 GO:0004067 ... P0A962 17451745
    53677 2him:C (1.82) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    53678 2him:C (1.82) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    53679 2him:D (1.82) BS01 ASP 3.5.1.1 GO:0004067 ... P0A962 17451745
    53680 2him:D (1.82) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    53681 2him:D (1.82) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    53682 2hit:L (2.75) BS01 BCL ? GO:0009772 ... P0C0Y8 17315985
    53683 2hit:L (2.75) BS02 BCL ? GO:0009772 ... P0C0Y8 17315985
    53684 2hit:L (2.75) BS03 BPH ? GO:0009772 ... P0C0Y8 17315985
    53685 2hit:L (2.75) BS04 U10 ? GO:0009772 ... P0C0Y8 17315985
    53686 2hit:L (2.75) BS05 FE ? GO:0009772 ... P0C0Y8 17315985
    53687 2hit:L (2.75) BS06 BCL ? GO:0009772 ... P0C0Y8 17315985
    53688 2hit:L (2.75) BS07 BPH ? GO:0009772 ... P0C0Y8 17315985
    53689 2hit:L (2.75) BS08 U10 ? GO:0009772 ... P0C0Y8 17315985
    53690 2hit:M (2.75) BS01 BCL ? GO:0009772 ... P0C0Y9 17315985
    53691 2hit:M (2.75) BS02 BPH ? GO:0009772 ... P0C0Y9 17315985
    53692 2hit:M (2.75) BS03 FE ? GO:0009772 ... P0C0Y9 17315985
    53693 2hit:M (2.75) BS04 BCL ? GO:0009772 ... P0C0Y9 17315985
    53694 2hit:M (2.75) BS05 BCL ? GO:0009772 ... P0C0Y9 17315985
    53695 2hit:M (2.75) BS06 BPH ? GO:0009772 ... P0C0Y9 17315985
    53696 2hit:M (2.75) BS07 U10 ? GO:0009772 ... P0C0Y9 17315985
    53697 2hit:M (2.75) BS08 PEW ? GO:0009772 ... P0C0Y9 17315985
    53698 2hiu:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 7749917
    53699 2hiz:A (2.5) BS01 LIJ 3.4.23.46 GO:0004190 ... P56817 17046251 MOAD: ic50=112nM
    PDBbind: -logKd/Ki=6.95, IC50=112nM
    53700 2hiz:B (2.5) BS01 LIJ 3.4.23.46 GO:0004190 ... P56817 17046251 MOAD: ic50=112nM
    53701 2hiz:C (2.5) BS01 LIJ 3.4.23.46 GO:0004190 ... P56817 17046251 MOAD: ic50=112nM
    53702 2hj4:A (1.8) BS01 PNZ 1.4.9.2 GO:0016491 ... P84888 17636875 MOAD: Kd=4.29uM
    53703 2hj4:A (1.8) BS02 PNZ 1.4.9.2 GO:0016491 ... P84888 17636875 MOAD: Kd=4.29uM
    53704 2hj4:B (1.8) BS01 PNZ 1.4.9.2 GO:0016491 ... P84888 17636875 PDBbind: -logKd/Ki=5.37, Kd=4.29uM
    53705 2hj4:B (1.8) BS02 PNZ 1.4.9.2 GO:0016491 ... P84888 17636875 PDBbind: -logKd/Ki=5.37, Kd=4.29uM
    53706 2hj4:D (1.8) BS01 PNZ 1.4.9.2 GO:0009308 ... P84887 17636875 MOAD: Kd=4.29uM
    PDBbind: -logKd/Ki=5.37, Kd=4.29uM
    53707 2hj4:D (1.8) BS02 PNZ 1.4.9.2 GO:0009308 ... P84887 17636875 MOAD: Kd=4.29uM
    PDBbind: -logKd/Ki=5.37, Kd=4.29uM
    53708 2hj4:H (1.8) BS01 PNZ 1.4.9.2 GO:0009308 ... P84887 17636875 MOAD: Kd=4.29uM
    53709 2hj4:H (1.8) BS02 PNZ 1.4.9.2 GO:0009308 ... P84887 17636875 MOAD: Kd=4.29uM
    53710 2hj6:L (3.0) BS01 BCL ? GO:0009772 ... P0C0Y8 17315985
    53711 2hj6:L (3.0) BS02 BCL ? GO:0009772 ... P0C0Y8 17315985
    53712 2hj6:L (3.0) BS03 BPH ? GO:0009772 ... P0C0Y8 17315985
    53713 2hj6:L (3.0) BS04 U10 ? GO:0009772 ... P0C0Y8 17315985
    53714 2hj6:L (3.0) BS05 FE ? GO:0009772 ... P0C0Y8 17315985
    53715 2hj6:L (3.0) BS06 BCL ? GO:0009772 ... P0C0Y8 17315985
    53716 2hj6:L (3.0) BS07 BPH ? GO:0009772 ... P0C0Y8 17315985
    53717 2hj6:L (3.0) BS08 U10 ? GO:0009772 ... P0C0Y8 17315985
    53718 2hj6:M (3.0) BS01 BCL ? GO:0009772 ... P0C0Y9 17315985
    53719 2hj6:M (3.0) BS02 BPH ? GO:0009772 ... P0C0Y9 17315985
    53720 2hj6:M (3.0) BS03 FE ? GO:0009772 ... P0C0Y9 17315985
    53721 2hj6:M (3.0) BS04 BCL ? GO:0009772 ... P0C0Y9 17315985
    53722 2hj6:M (3.0) BS05 BCL ? GO:0009772 ... P0C0Y9 17315985
    53723 2hj6:M (3.0) BS06 BPH ? GO:0009772 ... P0C0Y9 17315985
    53724 2hj6:M (3.0) BS07 U10 ? GO:0009772 ... P0C0Y9 17315985
    53725 2hj6:M (3.0) BS08 PS2 ? GO:0009772 ... P0C0Y9 17315985
    53726 2hj9:A (2.34) BS01 AI2 ? GO:0005515 ... P54300 16990134
    53727 2hj9:B (2.34) BS01 AI2 ? GO:0005515 ... P54300 16990134
    53728 2hjb:A (1.85) BS01 PZM 1.4.9.2 GO:0016491 ... P84888 17636875 MOAD: Kd=40.3uM
    53729 2hjb:B (1.85) BS01 PZM 1.4.9.2 GO:0016491 ... P84888 17636875
    53730 2hjb:D (1.85) BS01 PZM 1.4.9.2 GO:0009308 ... P84887 17636875 MOAD: Kd=40.3uM
    53731 2hjb:H (1.85) BS01 PZM 1.4.9.2 GO:0009308 ... P84887 17636875
    53732 2hk6:A (1.71) BS01 FE 4.99.1.9 GO:0004325 ... P32396 17198378
    53733 2hk6:A (1.71) BS02 FE 4.99.1.9 GO:0004325 ... P32396 17198378
    53734 2hk6:A (1.71) BS03 FE 4.99.1.9 GO:0004325 ... P32396 17198378
    53735 2hk9:A (2.2) BS01 ATR 1.1.1.25 GO:0004764 ... O67049 17649975
    53736 2hk9:A (2.2) BS02 SKM 1.1.1.25 GO:0004764 ... O67049 17649975
    53737 2hk9:B (2.2) BS01 NAP 1.1.1.25 GO:0004764 ... O67049 17649975
    53738 2hk9:B (2.2) BS02 SKM 1.1.1.25 GO:0004764 ... O67049 17649975
    53739 2hk9:C (2.2) BS01 NAP 1.1.1.25 GO:0004764 ... O67049 17649975
    53740 2hk9:C (2.2) BS02 SKM 1.1.1.25 GO:0004764 ... O67049 17649975
    53741 2hk9:D (2.2) BS01 NAP 1.1.1.25 GO:0004764 ... O67049 17649975
    53742 2hk9:D (2.2) BS02 SKM 1.1.1.25 GO:0004764 ... O67049 17649975
    53743 2hka:B (1.81) BS01 SO4 ? GO:0005515 ... P79345 17573352
    53744 2hka:B (1.81) BS02 C3S ? GO:0005515 ... P79345 17573352
    53745 2hka:C (1.81) BS01 C3S ? GO:0005515 ... P79345 17573352
    53746 2hke:A (1.8) BS01 SO4 4.1.1.33 GO:0004163 ... Q388P2 17583736
    53747 2hke:A (1.8) BS02 SO4 4.1.1.33 GO:0004163 ... Q388P2 17583736
    53748 2hke:A (1.8) BS03 SO4 4.1.1.33 GO:0004163 ... Q388P2 17583736
    53749 2hke:B (1.8) BS01 SO4 4.1.1.33 GO:0004163 ... Q388P2 17583736
    53750 2hke:B (1.8) BS02 SO4 4.1.1.33 GO:0004163 ... Q388P2 17583736
    53751 2hke:B (1.8) BS03 SO4 4.1.1.33 GO:0004163 ... Q388P2 17583736
    53752 2hkk:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17127057
    53753 2hkk:A (1.9) BS02 ALE 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17127057 MOAD: Ka=96M^-1
    53754 2hkm:D (1.5) BS01 PEA 1.4.9.2 GO:0009308 ... P84887 N/A
    53755 2hkm:H (1.5) BS01 PEA 1.4.9.2 GO:0009308 ... P84887 N/A
    53756 2hko:A (2.8) BS01 FAD 1.14.99.66 GO:0005634 ... O60341 16956976
    53757 2hkr:A (1.4) BS01 ZHZ 1.4.9.2 GO:0016491 ... P84888 N/A
    53758 2hkr:B (1.4) BS01 ZHH 1.4.9.2 GO:0016491 ... P84888 N/A
    53759 2hkr:D (1.4) BS01 ZHH 1.4.9.2 GO:0009308 ... P84887 N/A
    53760 2hkr:H (1.4) BS01 ZHZ 1.4.9.2 GO:0009308 ... P84887 N/A
    53761 2hkz:A (2.1) BS01 SER 6.1.1.3 GO:0004829 ... Q9UZ14 16902403
    53762 2hl0:A (1.86) BS01 A3S 6.1.1.3 GO:0004829 ... Q9UZ14 16902403
    53763 2hl1:A (2.25) BS01 A3S 6.1.1.3 GO:0004829 ... Q9UZ14 16902403
    53764 2hl1:B (2.25) BS01 A3S 6.1.1.3 GO:0004829 ... Q9UZ14 16902403
    53765 2hl2:A (2.6) BS01 SSA 6.1.1.3 GO:0004829 ... Q9UZ14 16902403
    53766 2hl2:B (2.6) BS01 SSA 6.1.1.3 GO:0004829 ... Q9UZ14 16902403
    53767 2hl4:A (1.55) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17251017
    53768 2hl4:A (1.55) BS02 BO1 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 17251017 MOAD: Ki=23nM
    PDBbind: -logKd/Ki=7.64, Ki=23nM
    BindingDB: Ki=23nM
    53769 2hld:A (2.8) BS01 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53770 2hld:B (2.8) BS01 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53771 2hld:C (2.8) BS01 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53772 2hld:D (2.8) BS01 ANP 7.1.2.2 GO:0005515 ... P00830 17082766
    53773 2hld:F (2.8) BS01 ANP 7.1.2.2 GO:0005515 ... P00830 17082766
    53774 2hld:J (2.8) BS01 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53775 2hld:K (2.8) BS01 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53776 2hld:K (2.8) BS02 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53777 2hld:L (2.8) BS01 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53778 2hld:L (2.8) BS02 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53779 2hld:M (2.8) BS01 MG 7.1.2.2 GO:0005515 ... P00830 17082766
    53780 2hld:M (2.8) BS02 ANP 7.1.2.2 GO:0005515 ... P00830 17082766
    53781 2hld:N (2.8) BS01 PO4 7.1.2.2 GO:0005515 ... P00830 17082766
    53782 2hld:O (2.8) BS01 ANP 7.1.2.2 GO:0005515 ... P00830 17082766
    53783 2hld:S (2.8) BS01 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53784 2hld:T (2.8) BS01 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53785 2hld:T (2.8) BS02 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53786 2hld:U (2.8) BS01 ANP 3.6.3.14 GO:0005524 ... P07251 17082766
    53787 2hld:V (2.8) BS01 MG 7.1.2.2 GO:0005515 ... P00830 17082766
    53788 2hld:V (2.8) BS02 ANP 7.1.2.2 GO:0005515 ... P00830 17082766
    53789 2hld:X (2.8) BS01 MG 7.1.2.2 GO:0005515 ... P00830 17082766
    53790 2hld:X (2.8) BS02 ANP 7.1.2.2 GO:0005515 ... P00830 17082766
    53791 2hld:Y (2.8) BS01 peptide 3.6.3.14 GO:0015986 ... P38077 17082766
    53792 2hlo:B (2.6) BS01 CA ? GO:0005102 ... P02675 N/A
    53793 2hlo:B (2.6) BS02 CA ? GO:0005102 ... P02675 N/A
    53794 2hlo:C (2.6) BS01 peptide ? GO:0005102 ... P02679 N/A
    53795 2hlo:C (2.6) BS02 CA ? GO:0005102 ... P02679 N/A
    53796 2hlo:C (2.6) BS03 CA ? GO:0005102 ... P02679 N/A
    53797 2hlo:E (2.6) BS01 CA ? GO:0005102 ... P02675 N/A
    53798 2hlo:E (2.6) BS02 CA ? GO:0005102 ... P02675 N/A
    53799 2hlo:F (2.6) BS01 peptide ? GO:0005102 ... P02679 N/A
    53800 2hlo:F (2.6) BS02 CA ? GO:0005102 ... P02679 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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