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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    39601 1xk4:I (1.8) BS02 CA ? GO:0002523 ... P05109 17553524
    39602 1xk4:J (1.8) BS01 CA ? GO:0002523 ... P05109 17553524
    39603 1xk4:J (1.8) BS02 CA ? GO:0002523 ... P05109 17553524
    39604 1xk4:K (1.8) BS01 CA ? GO:0002523 ... P06702 17553524
    39605 1xk4:K (1.8) BS02 CA ? GO:0002523 ... P06702 17553524
    39606 1xk4:L (1.8) BS01 CA ? GO:0002523 ... P06702 17553524
    39607 1xk4:L (1.8) BS02 CA ? GO:0002523 ... P06702 17553524
    39608 1xk5:A (2.4) BS01 TPG ? GO:0005634 ... O95149 15920472 MOAD: Kd=1uM
    PDBbind: -logKd/Ki=6.00, Kd=1.0uM
    39609 1xkh:A (3.6) BS01 peptide ? GO:0009279 ... P48632 15733922
    39610 1xkh:A (3.6) BS02 PVE ? GO:0009279 ... P48632 15733922
    39611 1xkh:B (3.6) BS01 peptide ? GO:0009279 ... P48632 15733922
    39612 1xkh:B (3.6) BS02 PVE ? GO:0009279 ... P48632 15733922
    39613 1xkh:C (3.6) BS01 peptide ? GO:0009279 ... P48632 15733922
    39614 1xkh:C (3.6) BS02 PVE ? GO:0009279 ... P48632 15733922
    39615 1xki:A (1.8) BS01 ZN ? GO:0004869 ... P31025 15489503
    39616 1xki:A (1.8) BS02 ZN ? GO:0004869 ... P31025 15489503
    39617 1xki:A (1.8) BS03 ZN ? GO:0004869 ... P31025 15489503
    39618 1xkv:A (2.2) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 16239727
    39619 1xkv:A (2.2) BS02 ATP 4.1.1.49 GO:0004611 ... Q5SLL5 16239727
    39620 1xkv:B (2.2) BS01 CA 4.1.1.49 GO:0004611 ... Q5SLL5 16239727
    39621 1xkw:A (2.0) BS01 188 ? GO:0006826 ... P42512 16139844
    39622 1xkx:A (1.93) BS01 IMK 2.4.1.1 GO:0000166 ... P00489 15741340 MOAD: Ki=8.6uM
    BindingDB: Ki=9000nM, IC50=8600nM
    39623 1xkx:A (1.93) BS02 IMK 2.4.1.1 GO:0000166 ... P00489 15741340 MOAD: Ki=8.6uM
    BindingDB: Ki=9000nM, IC50=8600nM
    39624 1xkx:A (1.93) BS03 IMK 2.4.1.1 GO:0000166 ... P00489 15741340 MOAD: Ki=8.6uM
    BindingDB: Ki=9000nM, IC50=8600nM
    39625 1xkx:A (1.93) BS04 PLP 2.4.1.1 GO:0000166 ... P00489 15741340
    39626 1xl0:A (1.92) BS01 OX2 2.4.1.1 GO:0000166 ... P00489 15741340 MOAD: Ki=145.2uM
    BindingDB: Ki=145000nM
    39627 1xl0:A (1.92) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 15741340
    39628 1xl1:A (2.1) BS01 TH1 2.4.1.1 GO:0000166 ... P00489 15741340 MOAD: Ki=76uM
    BindingDB: Ki=76000nM
    39629 1xl1:A (2.1) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 15741340
    39630 1xl8:A (2.2) BS01 152 2.3.1.137 GO:0005739 ... Q9DC50 15492013
    39631 1xl8:B (2.2) BS01 OCB 2.3.1.137 GO:0005739 ... Q9DC50 15492013
    39632 1xlb:A (2.5) BS01 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    39633 1xlb:B (2.5) BS01 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    39634 1xlc:A (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    39635 1xlc:A (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    39636 1xlc:B (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    39637 1xlc:B (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    39638 1xld:A (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    39639 1xld:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39640 1xld:A (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39641 1xld:B (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    39642 1xld:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39643 1xld:B (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39644 1xle:A (2.5) BS01 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39645 1xle:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39646 1xle:B (2.5) BS01 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39647 1xle:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39648 1xlf:A (2.5) BS01 GCO 5.3.1.5 GO:0000287 ... P12070 2319597
    39649 1xlf:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39650 1xlf:A (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39651 1xlf:B (2.5) BS01 GCO 5.3.1.5 GO:0000287 ... P12070 2319597
    39652 1xlf:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39653 1xlf:B (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39654 1xlg:A (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    39655 1xlg:A (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    39656 1xlg:B (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    39657 1xlg:B (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2319597
    39658 1xli:A (2.5) BS01 GLT 5.3.1.5 GO:0000287 ... P12070 2319597 MOAD: Ki=33mM
    39659 1xli:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39660 1xli:A (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39661 1xli:B (2.5) BS01 GLT 5.3.1.5 GO:0000287 ... P12070 2319597 MOAD: Ki=33mM
    39662 1xli:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39663 1xli:B (2.5) BS03 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39664 1xlj:A (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    39665 1xlj:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39666 1xlj:B (2.5) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 2319597
    39667 1xlj:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39668 1xlk:A (2.5) BS01 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39669 1xlk:A (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39670 1xlk:B (2.5) BS01 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39671 1xlk:B (2.5) BS02 MN 5.3.1.5 GO:0000287 ... P12070 2319597
    39672 1xll:A (2.5) BS01 ZN 5.3.1.5 GO:0000287 ... P12070 2319597
    39673 1xll:A (2.5) BS02 ZN 5.3.1.5 GO:0000287 ... P12070 2319597
    39674 1xll:B (2.5) BS01 ZN 5.3.1.5 GO:0000287 ... P12070 2319597
    39675 1xll:B (2.5) BS02 ZN 5.3.1.5 GO:0000287 ... P12070 2319597
    39676 1xlm:A (2.4) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 10456773
    39677 1xlm:B (2.4) BS01 XYL 5.3.1.5 GO:0000287 ... P12070 10456773
    39678 1xln:A (2.03) BS01 FES 1.9.3.2 GO:0005515 ... P00259 15755454
    39679 1xln:B (2.03) BS01 FES 1.9.3.2 GO:0005515 ... P00259 15755454
    39680 1xlo:A (1.84) BS01 FES 1.9.3.2 GO:0005515 ... P00259 15755454
    39681 1xlo:B (1.84) BS01 FES 1.9.3.2 GO:0005515 ... P00259 15755454
    39682 1xlp:A (2.0) BS01 FES 1.9.3.2 GO:0005515 ... P00259 15755454
    39683 1xlp:B (2.0) BS01 FES 1.9.3.2 GO:0005515 ... P00259 15755454
    39684 1xlp:C (2.0) BS01 FES 1.9.3.2 GO:0005515 ... P00259 15755454
    39685 1xlq:A (1.45) BS01 FES 1.9.3.2 GO:0005515 ... P00259 15755454
    39686 1xlq:B (1.45) BS01 FES 1.9.3.2 GO:0005515 ... P00259 15755454
    39687 1xlq:C (1.45) BS01 FES 1.9.3.2 GO:0005515 ... P00259 15755454
    39688 1xlr:A (1.94) BS01 VNL 4.1.3.40 GO:0005515 ... P26602 16343413
    39689 1xlr:A (1.94) BS02 VNL 4.1.3.40 GO:0005515 ... P26602 16343413
    39690 1xls:A (2.96) BS01 peptide ? GO:0003677 ... P19793 15610733
    39691 1xls:A (2.96) BS02 9CR ? GO:0003677 ... P19793 15610733 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    39692 1xls:B (2.96) BS01 peptide ? GO:0003677 ... P19793 15610733
    39693 1xls:B (2.96) BS02 peptide ? GO:0003677 ... P19793 15610733
    39694 1xls:B (2.96) BS03 9CR ? GO:0003677 ... P19793 15610733 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    39695 1xls:C (2.96) BS01 peptide ? GO:0003677 ... P19793 15610733
    39696 1xls:C (2.96) BS02 9CR ? GO:0003677 ... P19793 15610733 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    39697 1xls:D (2.96) BS01 peptide ? GO:0003677 ... P19793 15610733
    39698 1xls:D (2.96) BS02 9CR ? GO:0003677 ... P19793 15610733 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    39699 1xlt:A (3.1) BS01 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39700 1xlt:A (3.1) BS02 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39701 1xlt:A (3.1) BS03 NAD 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39702 1xlt:B (3.1) BS01 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39703 1xlt:B (3.1) BS02 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39704 1xlt:B (3.1) BS03 NAD 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39705 1xlt:D (3.1) BS01 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39706 1xlt:D (3.1) BS02 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39707 1xlt:D (3.1) BS03 NAD 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39708 1xlt:E (3.1) BS01 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39709 1xlt:E (3.1) BS02 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39710 1xlt:G (3.1) BS01 NAD 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39711 1xlt:H (3.1) BS01 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39712 1xlt:H (3.1) BS02 NAD 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    39713 1xlu:A (2.198) BS01 FUL 3.1.1.8 GO:0001540 ... P06276 15667209
    39714 1xlu:A (2.198) BS02 ISP 3.1.1.8 GO:0001540 ... P06276 15667209
    39715 1xlv:A (2.247) BS01 FUL 3.1.1.8 GO:0001540 ... P06276 15667209
    39716 1xlv:A (2.247) BS02 EFS 3.1.1.8 GO:0001540 ... P06276 15667209
    39717 1xlw:A (2.1) BS01 FUL 3.1.1.8 GO:0001540 ... P06276 15667209
    39718 1xlw:A (2.1) BS02 FUC 3.1.1.8 GO:0001540 ... P06276 15667209
    39719 1xm1:A (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    39720 1xm1:A (2.3) BS02 GAH 3.4.21.5 GO:0004252 ... P00734 N/A
    39721 1xm2:A (2.7) BS01 SO4 3.1.3.48 GO:0004721 ... Q93096 15571731
    39722 1xm2:B (2.7) BS01 SO4 3.1.3.48 GO:0004721 ... Q93096 15571731
    39723 1xm2:C (2.7) BS01 SO4 3.1.3.48 GO:0004721 ... Q93096 15571731
    39724 1xm2:D (2.7) BS01 SO4 3.1.3.48 GO:0004721 ... Q93096 15571731
    39725 1xm2:E (2.7) BS01 SO4 3.1.3.48 GO:0004721 ... Q93096 15571731
    39726 1xm5:A (2.7) BS01 NI 3.1.-.- GO:0004222 ... P0A898 16511207
    39727 1xm5:B (2.7) BS01 NI 3.1.-.- GO:0004222 ... P0A898 16511207
    39728 1xm5:C (2.7) BS01 NI 3.1.-.- GO:0004222 ... P0A898 16511207
    39729 1xm5:D (2.7) BS01 NI 3.1.-.- GO:0004222 ... P0A898 16511207
    39730 1xme:A (2.3) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 15735345
    39731 1xme:A (2.3) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 15735345
    39732 1xme:A (2.3) BS03 HAS 7.1.1.9 GO:0004129 ... Q5SJ79 15735345
    39733 1xme:A (2.3) BS04 GOL 7.1.1.9 GO:0004129 ... Q5SJ79 15735345
    39734 1xme:B (2.3) BS01 GOL 7.1.1.9 GO:0004129 ... Q5SJ80 15735345
    39735 1xme:B (2.3) BS02 CUA 7.1.1.9 GO:0004129 ... Q5SJ80 15735345
    39736 1xmm:A (2.5) BS01 M7G 3.6.1.59 GO:0000288 ... Q96C86 15769464
    39737 1xmm:B (2.5) BS01 G7M 3.6.1.59 GO:0000288 ... Q96C86 15769464
    39738 1xmm:B (2.5) BS02 M7G 3.6.1.59 GO:0000288 ... Q96C86 15769464
    39739 1xmm:C (2.5) BS01 G7M 3.6.1.59 GO:0000288 ... Q96C86 15769464
    39740 1xmm:D (2.5) BS01 M7G 3.6.1.59 GO:0000288 ... Q96C86 15769464
    39741 1xmo:B (3.25) BS01 rna ? GO:0003735 ... P80371 15558052
    39742 1xmo:C (3.25) BS01 rna ? GO:0003676 ... P80372 15558052
    39743 1xmo:D (3.25) BS01 rna ? GO:0003723 ... P80373 15558052
    39744 1xmo:E (3.25) BS01 rna ? GO:0003723 ... Q5SHQ5 15558052
    39745 1xmo:F (3.25) BS01 rna ? GO:0003735 ... Q5SLP8 15558052
    39746 1xmo:G (3.25) BS01 rna ? GO:0000028 ... P17291 15558052
    39747 1xmo:H (3.25) BS01 rna ? GO:0003735 ... P0DOY9 15558052
    39748 1xmo:I (3.25) BS01 rna ? GO:0000049 ... P80374 15558052
    39749 1xmo:J (3.25) BS01 rna ? GO:0000049 ... Q5SHN7 15558052
    39750 1xmo:J (3.25) BS02 MG ? GO:0000049 ... Q5SHN7 15558052
    39751 1xmo:K (3.25) BS01 rna ? GO:0003735 ... P80376 15558052
    39752 1xmo:L (3.25) BS01 rna ? GO:0000049 ... Q5SHN3 15558052
    39753 1xmo:L (3.25) BS02 MG ? GO:0000049 ... Q5SHN3 15558052
    39754 1xmo:M (3.25) BS01 rna ? GO:0000049 ... P80377 15558052
    39755 1xmo:N (3.25) BS01 rna ? GO:0003735 ... P0DOY6 15558052
    39756 1xmo:N (3.25) BS02 ZN ? GO:0003735 ... P0DOY6 15558052
    39757 1xmo:O (3.25) BS01 rna ? GO:0003735 ... Q5SJ76 15558052
    39758 1xmo:P (3.25) BS01 rna ? GO:0003735 ... Q5SJH3 15558052
    39759 1xmo:Q (3.25) BS01 rna ? GO:0003735 ... P0DOY7 15558052
    39760 1xmo:R (3.25) BS01 rna ? GO:0003735 ... Q5SLQ0 15558052
    39761 1xmo:S (3.25) BS01 rna ? GO:0000028 ... Q5SHP2 15558052
    39762 1xmo:T (3.25) BS01 rna ? GO:0003723 ... P80380 15558052
    39763 1xmq:B (3.0) BS01 rna ? GO:0003735 ... P80371 15558052
    39764 1xmq:C (3.0) BS01 rna ? GO:0003676 ... P80372 15558052
    39765 1xmq:D (3.0) BS01 rna ? GO:0003723 ... P80373 15558052
    39766 1xmq:D (3.0) BS02 ZN ? GO:0003723 ... P80373 15558052
    39767 1xmq:E (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 15558052
    39768 1xmq:F (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 15558052
    39769 1xmq:G (3.0) BS01 rna ? GO:0000028 ... P17291 15558052
    39770 1xmq:H (3.0) BS01 rna ? GO:0003735 ... P0DOY9 15558052
    39771 1xmq:I (3.0) BS01 rna ? GO:0000049 ... P80374 15558052
    39772 1xmq:J (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 15558052
    39773 1xmq:K (3.0) BS01 rna ? GO:0003735 ... P80376 15558052
    39774 1xmq:L (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 15558052
    39775 1xmq:L (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 15558052
    39776 1xmq:M (3.0) BS01 rna ? GO:0000049 ... P80377 15558052
    39777 1xmq:N (3.0) BS01 rna ? GO:0003735 ... P0DOY6 15558052
    39778 1xmq:N (3.0) BS02 ZN ? GO:0003735 ... P0DOY6 15558052
    39779 1xmq:O (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 15558052
    39780 1xmq:P (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 15558052
    39781 1xmq:Q (3.0) BS01 rna ? GO:0003735 ... P0DOY7 15558052
    39782 1xmq:R (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 15558052
    39783 1xmq:S (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 15558052
    39784 1xmq:T (3.0) BS01 rna ? GO:0003723 ... P80380 15558052
    39785 1xms:A (2.1) BS01 ANP ? GO:0000725 ... P0A7G6 15610008
    39786 1xmv:A (1.9) BS01 MG ? GO:0000725 ... P0A7G6 15610008
    39787 1xmv:A (1.9) BS02 ADP ? GO:0000725 ... P0A7G6 15610008
    39788 1xn2:A (1.9) BS01 peptide 3.4.23.46 GO:0004190 ... P56817 15628850
    39789 1xn2:B (1.9) BS01 peptide 3.4.23.46 GO:0004190 ... P56817 15628850
    39790 1xn2:C (1.9) BS01 peptide 3.4.23.46 GO:0004190 ... P56817 15628850
    39791 1xn2:D (1.9) BS01 peptide 3.4.23.46 GO:0004190 ... P56817 15628850
    39792 1xn3:C (2.0) BS01 peptide 3.4.23.46 GO:0004190 ... P56817 15628850
    39793 1xng:A (1.7) BS01 DND 6.3.1.5 GO:0003952 ... O25096 15645437
    39794 1xng:A (1.7) BS02 ATP 6.3.1.5 GO:0003952 ... O25096 15645437
    39795 1xng:A (1.7) BS03 DND 6.3.1.5 GO:0003952 ... O25096 15645437
    39796 1xng:B (1.7) BS01 DND 6.3.1.5 GO:0003952 ... O25096 15645437
    39797 1xng:B (1.7) BS02 DND 6.3.1.5 GO:0003952 ... O25096 15645437
    39798 1xng:B (1.7) BS03 ATP 6.3.1.5 GO:0003952 ... O25096 15645437
    39799 1xnj:A (1.98) BS01 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O43252 15755455
    39800 1xnj:B (1.98) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O43252 15755455

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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