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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38401 1wnt:C (2.3) BS01 NAP 1.1.1.10 GO:0004090 ... Q7Z4W1 15906319
    38402 1wnt:D (2.3) BS01 NAP 1.1.1.10 GO:0004090 ... Q7Z4W1 15906319
    38403 1wnu:A (2.8) BS01 ZN ? GO:0000166 ... O58307 16087889
    38404 1wnu:A (2.8) BS02 SER ? GO:0000166 ... O58307 16087889
    38405 1wnu:B (2.8) BS01 ZN ? GO:0000166 ... O58307 16087889
    38406 1wnu:B (2.8) BS02 SER ? GO:0000166 ... O58307 16087889
    38407 1wo2:A (2.01) BS01 BGC 3.2.1.1 GO:0003824 ... P00690 15736930
    38408 1wo2:A (2.01) BS02 GLC 3.2.1.1 GO:0003824 ... P00690 15736930
    38409 1wo2:A (2.01) BS03 GLC 3.2.1.1 GO:0003824 ... P00690 15736930
    38410 1wo2:A (2.01) BS04 GLC 3.2.1.1 GO:0003824 ... P00690 15736930
    38411 1wo2:A (2.01) BS05 GLC 3.2.1.1 GO:0003824 ... P00690 15736930
    38412 1wo2:A (2.01) BS06 BGC 3.2.1.1 GO:0003824 ... P00690 15736930
    38413 1wo2:A (2.01) BS07 GLC 3.2.1.1 GO:0003824 ... P00690 15736930
    38414 1wo2:A (2.01) BS08 CL 3.2.1.1 GO:0003824 ... P00690 15736930
    38415 1wo2:A (2.01) BS09 CA 3.2.1.1 GO:0003824 ... P00690 15736930
    38416 1woa:A (2.8) BS01 G2H 5.3.1.1 GO:0004807 ... Q07412 15465054
    38417 1woa:B (2.8) BS01 G2H 5.3.1.1 GO:0004807 ... Q07412 15465054
    38418 1woa:C (2.8) BS01 G2H 5.3.1.1 GO:0004807 ... Q07412 15465054
    38419 1woa:D (2.8) BS01 G2H 5.3.1.1 GO:0004807 ... Q07412 15465054
    38420 1wob:A (2.8) BS01 SO4 5.3.1.1 GO:0004807 ... Q07412 15465054
    38421 1wob:B (2.8) BS01 SO4 5.3.1.1 GO:0004807 ... Q07412 15465054
    38422 1wob:C (2.8) BS01 SO4 5.3.1.1 GO:0004807 ... Q07412 15465054
    38423 1wob:D (2.8) BS01 SO4 5.3.1.1 GO:0004807 ... Q07412 15465054
    38424 1wod:A (1.75) BS01 WO4 ? GO:0015412 ... P37329 9302996
    38425 1woj:A (1.8) BS01 PO4 3.1.4.37 GO:0004113 ... P09543 15713463
    38426 1woo:A (2.4) BS01 THG 2.1.2.10 GO:0004047 ... Q9WY54 15355973
    38427 1wop:A (2.0) BS01 FFO 2.1.2.10 GO:0004047 ... Q9WY54 15355973
    38428 1wop:A (2.0) BS02 FFO 2.1.2.10 GO:0004047 ... Q9WY54 15355973
    38429 1wor:A (1.95) BS01 RED 2.1.2.10 GO:0004047 ... Q9WY54 15355973
    38430 1wp6:A (2.1) BS01 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    38431 1wp6:A (2.1) BS02 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    38432 1wp6:A (2.1) BS03 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    38433 1wpc:A (1.9) BS01 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    38434 1wpc:A (1.9) BS02 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    38435 1wpc:A (1.9) BS03 GLD 3.2.1.98 GO:0004553 ... P19571 15518553
    38436 1wpc:A (1.9) BS04 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    38437 1wpc:A (1.9) BS05 GLD 3.2.1.98 GO:0004553 ... P19571 15518553
    38438 1wpc:A (1.9) BS06 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    38439 1wpc:A (1.9) BS07 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    38440 1wpc:A (1.9) BS08 ACI 3.2.1.98 GO:0004553 ... P19571 15518553
    38441 1wpc:A (1.9) BS09 ACI 3.2.1.98 GO:0004553 ... P19571 15518553
    38442 1wpc:A (1.9) BS10 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    38443 1wpc:A (1.9) BS11 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    38444 1wpc:A (1.9) BS12 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    38445 1wpg:A (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    38446 1wpg:A (2.3) BS02 MF4 7.2.2.10 GO:0000166 ... P04191 15448704
    38447 1wpg:A (2.3) BS03 ADP 7.2.2.10 GO:0000166 ... P04191 15448704
    38448 1wpg:B (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    38449 1wpg:B (2.3) BS02 MF4 7.2.2.10 GO:0000166 ... P04191 15448704
    38450 1wpg:B (2.3) BS03 ADP 7.2.2.10 GO:0000166 ... P04191 15448704
    38451 1wpg:C (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    38452 1wpg:C (2.3) BS02 MF4 7.2.2.10 GO:0000166 ... P04191 15448704
    38453 1wpg:C (2.3) BS03 ADP 7.2.2.10 GO:0000166 ... P04191 15448704
    38454 1wpg:D (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    38455 1wpg:D (2.3) BS02 MF4 7.2.2.10 GO:0000166 ... P04191 15448704
    38456 1wpg:D (2.3) BS03 ADP 7.2.2.10 GO:0000166 ... P04191 15448704
    38457 1wpl:A (2.8) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    38458 1wpl:A (2.8) BS02 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38459 1wpl:A (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38460 1wpl:A (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38461 1wpl:A (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38462 1wpl:B (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38463 1wpl:B (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    38464 1wpl:B (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38465 1wpl:B (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38466 1wpl:B (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38467 1wpl:C (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38468 1wpl:C (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    38469 1wpl:C (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38470 1wpl:C (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38471 1wpl:D (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38472 1wpl:D (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    38473 1wpl:D (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38474 1wpl:D (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38475 1wpl:D (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38476 1wpl:E (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38477 1wpl:E (2.8) BS02 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38478 1wpl:E (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38479 1wpl:E (2.8) BS04 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    38480 1wpl:E (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38481 1wpl:F (2.8) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    38482 1wpl:F (2.8) BS02 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38483 1wpl:F (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38484 1wpl:F (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38485 1wpl:F (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38486 1wpl:G (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38487 1wpl:G (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    38488 1wpl:G (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38489 1wpl:G (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38490 1wpl:G (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38491 1wpl:H (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38492 1wpl:H (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    38493 1wpl:H (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38494 1wpl:H (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38495 1wpl:H (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38496 1wpl:I (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38497 1wpl:I (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    38498 1wpl:I (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38499 1wpl:I (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38500 1wpl:I (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38501 1wpl:J (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38502 1wpl:J (2.8) BS02 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38503 1wpl:J (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    38504 1wpl:J (2.8) BS04 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    38505 1wpl:J (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    38506 1wpm:A (2.05) BS01 SO4 3.6.1.1 GO:0004427 ... P37487 15533045
    38507 1wpm:B (2.05) BS01 SO4 3.6.1.1 GO:0004427 ... P37487 15533045
    38508 1wpp:A (2.05) BS01 ZN 3.6.1.1 GO:0004427 ... P95765 15533045
    38509 1wpp:A (2.05) BS02 ZN 3.6.1.1 GO:0004427 ... P95765 15533045
    38510 1wpp:A (2.05) BS03 SO4 3.6.1.1 GO:0004427 ... P95765 15533045
    38511 1wpp:A (2.05) BS04 SO4 3.6.1.1 GO:0004427 ... P95765 15533045
    38512 1wpp:B (2.05) BS01 ZN 3.6.1.1 GO:0004427 ... P95765 15533045
    38513 1wpp:B (2.05) BS02 ZN 3.6.1.1 GO:0004427 ... P95765 15533045
    38514 1wpp:B (2.05) BS03 SO4 3.6.1.1 GO:0004427 ... P95765 15533045
    38515 1wpq:A (2.5) BS01 SO4 1.1.1.8 GO:0004368 ... P21695 16460752
    38516 1wpq:A (2.5) BS02 SO4 1.1.1.8 GO:0004368 ... P21695 16460752
    38517 1wpq:A (2.5) BS03 NAD 1.1.1.8 GO:0004368 ... P21695 16460752
    38518 1wpq:B (2.5) BS01 SO4 1.1.1.8 GO:0004368 ... P21695 16460752
    38519 1wpq:B (2.5) BS02 NAD 1.1.1.8 GO:0004368 ... P21695 16460752
    38520 1wpy:A (1.6) BS01 BTN 6.3.4.15 GO:0004077 ... O57883 16169557
    38521 1wpy:B (1.6) BS01 BTN 6.3.4.15 GO:0004077 ... O57883 16169557
    38522 1wq1:R (2.5) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9219684
    38523 1wq1:R (2.5) BS02 GDP 3.6.5.2 GO:0003924 ... P01112 9219684
    38524 1wq1:R (2.5) BS03 AF3 3.6.5.2 GO:0003924 ... P01112 9219684
    38525 1wqv:L (2.5) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 15504346
    38526 1wqv:L (2.5) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 15504346
    38527 1wqv:L (2.5) BS03 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    38528 1wqv:L (2.5) BS04 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    38529 1wqv:L (2.5) BS05 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    38530 1wqv:L (2.5) BS06 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    38531 1wqv:L (2.5) BS07 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    38532 1wqv:L (2.5) BS08 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    38533 1wqv:L (2.5) BS09 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    38534 1wqw:A (1.45) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 16169557
    38535 1wqw:B (1.45) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 16169557
    38536 1wri:A (1.2) BS01 FES ? GO:0009055 ... P00237 15513928
    38537 1wrp:R (2.2) BS01 TRP ? GO:0003677 ... P0A881 3375234
    38538 1wrr:A (1.64) BS01 UNC 1.7.3.3 GO:0004846 ... Q00511 15735331
    38539 1wrs:R (-1.00) BS01 TRP ? GO:0003677 ... P0A881 8433368
    38540 1wrs:R (-1.00) BS02 TRP ? GO:0003677 ... P0A881 8433368
    38541 1wrs:S (-1.00) BS01 TRP ? GO:0003677 ... P0A881 8433368
    38542 1wrs:S (-1.00) BS02 TRP ? GO:0003677 ... P0A881 8433368
    38543 1wrz:A (2.0) BS01 peptide ? GO:0000086 ... P0DP23 N/A
    38544 1wrz:A (2.0) BS02 CA ? GO:0000086 ... P0DP23 N/A
    38545 1wrz:A (2.0) BS03 CA ? GO:0000086 ... P0DP23 N/A
    38546 1wrz:A (2.0) BS04 CA ? GO:0000086 ... P0DP23 N/A
    38547 1wrz:A (2.0) BS05 CA ? GO:0000086 ... P0DP23 N/A
    38548 1ws2:A (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    38549 1ws2:A (2.7) BS02 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    38550 1ws2:B (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    38551 1ws2:C (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    38552 1ws2:C (2.7) BS02 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    38553 1ws2:D (2.7) BS01 URN 1.7.3.3 GO:0004846 ... Q00511 15735331
    38554 1ws3:A (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    38555 1ws3:A (3.2) BS02 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    38556 1ws3:B (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    38557 1ws3:C (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    38558 1ws3:D (3.2) BS01 URA 1.7.3.3 GO:0004846 ... Q00511 15735331
    38559 1ws4:A (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    38560 1ws4:A (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    38561 1ws4:A (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    38562 1ws4:A (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    PDBbind: -logKd/Ki=3.00, Kd=1.00mM
    38563 1ws4:C (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    38564 1ws4:C (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    38565 1ws4:C (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    38566 1ws4:C (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    38567 1ws4:E (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    38568 1ws4:E (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    38569 1ws4:E (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    38570 1ws4:E (1.9) BS04 AMG ? GO:0005575 ... P18670 15733927
    38571 1ws4:G (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    38572 1ws4:G (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    38573 1ws4:G (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    38574 1ws4:G (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    38575 1ws5:A (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    38576 1ws5:A (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    38577 1ws5:A (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    38578 1ws5:A (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    38579 1ws5:C (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    38580 1ws5:C (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    38581 1ws5:C (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    38582 1ws5:C (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    38583 1ws5:E (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    38584 1ws5:E (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    38585 1ws5:E (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    38586 1ws5:E (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    38587 1ws5:G (1.9) BS01 peptide ? GO:0005575 ... P18670 15733927
    38588 1ws5:G (1.9) BS02 peptide ? GO:0005575 ... P18670 15733927
    38589 1ws5:G (1.9) BS03 peptide ? GO:0005575 ... P18670 15733927
    38590 1ws5:G (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    38591 1wse:A (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    38592 1wse:B (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    38593 1wsf:A (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    38594 1wsf:B (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    38595 1wsf:D (2.3) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    38596 1wsg:A (2.2) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    38597 1wsg:D (2.2) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 15644213
    38598 1wss:L (2.6) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 16510984
    38599 1wss:L (2.6) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 16510984
    38600 1wss:L (2.6) BS03 CA 3.4.21.21 GO:0005509 ... P08709 16510984

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218