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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    37201 1vy6:DQ (2.9) BS03 MG ? GO:0000049 ... P60489 25132179
    37202 1vy6:DQ (2.9) BS04 MG ? GO:0000049 ... P60489 25132179
    37203 1vy6:DQ (2.9) BS05 MG ? GO:0000049 ... P60489 25132179
    37204 1vy6:DR (2.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    37205 1vy6:DS (2.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    37206 1vy6:DS (2.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    37207 1vy6:DT (2.9) BS01 rna ? GO:0003735 ... P60490 25132179
    37208 1vy6:DT (2.9) BS02 rna ? GO:0003735 ... P60490 25132179
    37209 1vy6:DU (2.9) BS01 rna ? GO:0000027 ... P60491 25132179
    37210 1vy6:DV (2.9) BS01 rna ? GO:0003723 ... P60492 25132179
    37211 1vy6:DV (2.9) BS02 MG ? GO:0003723 ... P60492 25132179
    37212 1vy6:DV (2.9) BS03 MG ? GO:0003723 ... P60492 25132179
    37213 1vy6:DW (2.9) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    37214 1vy6:DW (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    37215 1vy6:DX (2.9) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    37216 1vy6:DY (2.9) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    37217 1vy6:DY (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    37218 1vy6:DZ (2.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    37219 1vy6:DZ (2.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    37220 1vy7:AB (2.8) BS01 rna ? GO:0003735 ... P80371 25132179
    37221 1vy7:AC (2.8) BS01 rna ? GO:0003676 ... P80372 25132179
    37222 1vy7:AD (2.8) BS01 rna ? GO:0003723 ... P80373 25132179
    37223 1vy7:AD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25132179
    37224 1vy7:AE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    37225 1vy7:AE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    37226 1vy7:AE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    37227 1vy7:AF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    37228 1vy7:AG (2.8) BS01 rna ? GO:0000028 ... P17291 25132179
    37229 1vy7:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    37230 1vy7:AI (2.8) BS01 rna ? GO:0000049 ... P80374 25132179
    37231 1vy7:AI (2.8) BS02 rna ? GO:0000049 ... P80374 25132179
    37232 1vy7:AJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    37233 1vy7:AK (2.8) BS01 rna ? GO:0003735 ... P80376 25132179
    37234 1vy7:AK (2.8) BS02 MG ? GO:0003735 ... P80376 25132179
    37235 1vy7:AL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    37236 1vy7:AL (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    37237 1vy7:AM (2.8) BS01 rna ? GO:0000049 ... P80377 25132179
    37238 1vy7:AM (2.8) BS02 rna ? GO:0000049 ... P80377 25132179
    37239 1vy7:AM (2.8) BS03 rna ? GO:0000049 ... P80377 25132179
    37240 1vy7:AM (2.8) BS04 MG ? GO:0000049 ... P80377 25132179
    37241 1vy7:AN (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    37242 1vy7:AN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25132179
    37243 1vy7:AO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    37244 1vy7:AO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    37245 1vy7:AP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    37246 1vy7:AQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    37247 1vy7:AR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    37248 1vy7:AS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    37249 1vy7:AT (2.8) BS01 rna ? GO:0003723 ... P80380 25132179
    37250 1vy7:B0 (2.8) BS01 rna ? GO:0003735 ... P60493 25132179
    37251 1vy7:B0 (2.8) BS02 rna ? GO:0003735 ... P60493 25132179
    37252 1vy7:B0 (2.8) BS03 rna ? GO:0003735 ... P60493 25132179
    37253 1vy7:B0 (2.8) BS04 MG ? GO:0003735 ... P60493 25132179
    37254 1vy7:B0 (2.8) BS05 MG ? GO:0003735 ... P60493 25132179
    37255 1vy7:B0 (2.8) BS06 MG ? GO:0003735 ... P60493 25132179
    37256 1vy7:B1 (2.8) BS01 rna ? GO:0003735 ... P60494 25132179
    37257 1vy7:B1 (2.8) BS02 rna ? GO:0003735 ... P60494 25132179
    37258 1vy7:B1 (2.8) BS03 MG ? GO:0003735 ... P60494 25132179
    37259 1vy7:B2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    37260 1vy7:B3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    37261 1vy7:B3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    37262 1vy7:B3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    37263 1vy7:B4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    37264 1vy7:B4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    37265 1vy7:B5 (2.8) BS01 rna ? GO:0003735 ... P80339 25132179
    37266 1vy7:B5 (2.8) BS02 MG ? GO:0003735 ... P80339 25132179
    37267 1vy7:B5 (2.8) BS03 MG ? GO:0003735 ... P80339 25132179
    37268 1vy7:B5 (2.8) BS04 ZN ? GO:0003735 ... P80339 25132179
    37269 1vy7:B6 (2.8) BS01 rna ? GO:0000049 ... P35871 25132179
    37270 1vy7:B6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25132179
    37271 1vy7:B7 (2.8) BS01 rna ? GO:0003735 ... P80340 25132179
    37272 1vy7:B7 (2.8) BS02 MG ? GO:0003735 ... P80340 25132179
    37273 1vy7:B8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    37274 1vy7:B9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    37275 1vy7:B9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    37276 1vy7:BD (2.8) BS01 rna ? GO:0002181 ... P60405 25132179
    37277 1vy7:BD (2.8) BS02 rna ? GO:0002181 ... P60405 25132179
    37278 1vy7:BD (2.8) BS03 MG ? GO:0002181 ... P60405 25132179
    37279 1vy7:BD (2.8) BS04 MG ? GO:0002181 ... P60405 25132179
    37280 1vy7:BD (2.8) BS05 MG ? GO:0002181 ... P60405 25132179
    37281 1vy7:BD (2.8) BS06 MG ? GO:0002181 ... P60405 25132179
    37282 1vy7:BD (2.8) BS07 MG ? GO:0002181 ... P60405 25132179
    37283 1vy7:BD (2.8) BS08 MG ? GO:0002181 ... P60405 25132179
    37284 1vy7:BD (2.8) BS09 MG ? GO:0002181 ... P60405 25132179
    37285 1vy7:BD (2.8) BS10 MG ? GO:0002181 ... P60405 25132179
    37286 1vy7:BD (2.8) BS11 MG ? GO:0002181 ... P60405 25132179
    37287 1vy7:BD (2.8) BS12 MG ? GO:0002181 ... P60405 25132179
    37288 1vy7:BE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    37289 1vy7:BE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    37290 1vy7:BE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    37291 1vy7:BE (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 25132179
    37292 1vy7:BE (2.8) BS05 MG ? GO:0003735 ... Q5SHN8 25132179
    37293 1vy7:BF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    37294 1vy7:BF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    37295 1vy7:BF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    37296 1vy7:BF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    37297 1vy7:BF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    37298 1vy7:BF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    37299 1vy7:BG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    37300 1vy7:BG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    37301 1vy7:BG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25132179
    37302 1vy7:BH (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    37303 1vy7:BI (2.8) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    37304 1vy7:BN (2.8) BS01 rna ? GO:0003729 ... P60488 25132179
    37305 1vy7:BN (2.8) BS02 MG ? GO:0003729 ... P60488 25132179
    37306 1vy7:BN (2.8) BS03 MG ? GO:0003729 ... P60488 25132179
    37307 1vy7:BN (2.8) BS04 MG ? GO:0003729 ... P60488 25132179
    37308 1vy7:BO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    37309 1vy7:BO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    37310 1vy7:BP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    37311 1vy7:BP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    37312 1vy7:BP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    37313 1vy7:BQ (2.8) BS01 rna ? GO:0000049 ... P60489 25132179
    37314 1vy7:BQ (2.8) BS02 rna ? GO:0000049 ... P60489 25132179
    37315 1vy7:BQ (2.8) BS03 MG ? GO:0000049 ... P60489 25132179
    37316 1vy7:BQ (2.8) BS04 MG ? GO:0000049 ... P60489 25132179
    37317 1vy7:BQ (2.8) BS05 MG ? GO:0000049 ... P60489 25132179
    37318 1vy7:BQ (2.8) BS06 MG ? GO:0000049 ... P60489 25132179
    37319 1vy7:BR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    37320 1vy7:BR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    37321 1vy7:BR (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    37322 1vy7:BR (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 25132179
    37323 1vy7:BS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    37324 1vy7:BS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    37325 1vy7:BT (2.8) BS01 rna ? GO:0003735 ... P60490 25132179
    37326 1vy7:BT (2.8) BS02 rna ? GO:0003735 ... P60490 25132179
    37327 1vy7:BU (2.8) BS01 rna ? GO:0000027 ... P60491 25132179
    37328 1vy7:BU (2.8) BS02 MG ? GO:0000027 ... P60491 25132179
    37329 1vy7:BU (2.8) BS03 MG ? GO:0000027 ... P60491 25132179
    37330 1vy7:BU (2.8) BS04 MG ? GO:0000027 ... P60491 25132179
    37331 1vy7:BU (2.8) BS05 MG ? GO:0000027 ... P60491 25132179
    37332 1vy7:BU (2.8) BS06 MG ? GO:0000027 ... P60491 25132179
    37333 1vy7:BU (2.8) BS07 MG ? GO:0000027 ... P60491 25132179
    37334 1vy7:BU (2.8) BS08 MG ? GO:0000027 ... P60491 25132179
    37335 1vy7:BV (2.8) BS01 rna ? GO:0003723 ... P60492 25132179
    37336 1vy7:BV (2.8) BS02 MG ? GO:0003723 ... P60492 25132179
    37337 1vy7:BV (2.8) BS03 MG ? GO:0003723 ... P60492 25132179
    37338 1vy7:BV (2.8) BS04 MG ? GO:0003723 ... P60492 25132179
    37339 1vy7:BV (2.8) BS05 MG ? GO:0003723 ... P60492 25132179
    37340 1vy7:BV (2.8) BS06 MG ? GO:0003723 ... P60492 25132179
    37341 1vy7:BW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    37342 1vy7:BW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    37343 1vy7:BW (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    37344 1vy7:BX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    37345 1vy7:BX (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    37346 1vy7:BX (2.8) BS03 MG ? GO:0000027 ... Q5SHP0 25132179
    37347 1vy7:BY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    37348 1vy7:BY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    37349 1vy7:BZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    37350 1vy7:BZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    37351 1vy7:CB (2.8) BS01 rna ? GO:0003735 ... P80371 25132179
    37352 1vy7:CC (2.8) BS01 rna ? GO:0003676 ... P80372 25132179
    37353 1vy7:CD (2.8) BS01 rna ? GO:0003723 ... P80373 25132179
    37354 1vy7:CD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25132179
    37355 1vy7:CE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    37356 1vy7:CE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    37357 1vy7:CE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    37358 1vy7:CF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    37359 1vy7:CF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    37360 1vy7:CG (2.8) BS01 rna ? GO:0000028 ... P17291 25132179
    37361 1vy7:CH (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    37362 1vy7:CI (2.8) BS01 rna ? GO:0000049 ... P80374 25132179
    37363 1vy7:CI (2.8) BS02 rna ? GO:0000049 ... P80374 25132179
    37364 1vy7:CJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    37365 1vy7:CK (2.8) BS01 rna ? GO:0003735 ... P80376 25132179
    37366 1vy7:CK (2.8) BS02 MG ? GO:0003735 ... P80376 25132179
    37367 1vy7:CL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    37368 1vy7:CM (2.8) BS01 rna ? GO:0000049 ... P80377 25132179
    37369 1vy7:CM (2.8) BS02 rna ? GO:0000049 ... P80377 25132179
    37370 1vy7:CN (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    37371 1vy7:CN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25132179
    37372 1vy7:CO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    37373 1vy7:CO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    37374 1vy7:CP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    37375 1vy7:CQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25132179
    37376 1vy7:CR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    37377 1vy7:CS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    37378 1vy7:CT (2.8) BS01 rna ? GO:0003723 ... P80380 25132179
    37379 1vy7:CT (2.8) BS02 MG ? GO:0003723 ... P80380 25132179
    37380 1vy7:D0 (2.8) BS01 rna ? GO:0003735 ... P60493 25132179
    37381 1vy7:D0 (2.8) BS02 rna ? GO:0003735 ... P60493 25132179
    37382 1vy7:D0 (2.8) BS03 rna ? GO:0003735 ... P60493 25132179
    37383 1vy7:D1 (2.8) BS01 rna ? GO:0003735 ... P60494 25132179
    37384 1vy7:D1 (2.8) BS02 rna ? GO:0003735 ... P60494 25132179
    37385 1vy7:D2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    37386 1vy7:D3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    37387 1vy7:D3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    37388 1vy7:D3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    37389 1vy7:D4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    37390 1vy7:D4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    37391 1vy7:D5 (2.8) BS01 rna ? GO:0003735 ... P80339 25132179
    37392 1vy7:D5 (2.8) BS02 MG ? GO:0003735 ... P80339 25132179
    37393 1vy7:D5 (2.8) BS03 ZN ? GO:0003735 ... P80339 25132179
    37394 1vy7:D6 (2.8) BS01 rna ? GO:0000049 ... P35871 25132179
    37395 1vy7:D6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25132179
    37396 1vy7:D7 (2.8) BS01 rna ? GO:0003735 ... P80340 25132179
    37397 1vy7:D7 (2.8) BS02 MG ? GO:0003735 ... P80340 25132179
    37398 1vy7:D8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    37399 1vy7:D9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    37400 1vy7:D9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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