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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    36801 1vy5:AL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    36802 1vy5:AL (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    36803 1vy5:AM (2.55) BS01 rna ? GO:0000049 ... P80377 25132179
    36804 1vy5:AM (2.55) BS02 rna ? GO:0000049 ... P80377 25132179
    36805 1vy5:AM (2.55) BS03 rna ? GO:0000049 ... P80377 25132179
    36806 1vy5:AM (2.55) BS04 MG ? GO:0000049 ... P80377 25132179
    36807 1vy5:AN (2.55) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    36808 1vy5:AN (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    36809 1vy5:AO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    36810 1vy5:AO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    36811 1vy5:AP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    36812 1vy5:AQ (2.55) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    36813 1vy5:AR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    36814 1vy5:AS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    36815 1vy5:AT (2.55) BS01 rna ? GO:0003723 ... P80380 25132179
    36816 1vy5:B0 (2.55) BS01 rna ? GO:0003735 ... P60493 25132179
    36817 1vy5:B0 (2.55) BS02 rna ? GO:0003735 ... P60493 25132179
    36818 1vy5:B0 (2.55) BS03 MG ? GO:0003735 ... P60493 25132179
    36819 1vy5:B1 (2.55) BS01 rna ? GO:0003735 ... P60494 25132179
    36820 1vy5:B1 (2.55) BS02 rna ? GO:0003735 ... P60494 25132179
    36821 1vy5:B1 (2.55) BS03 MG ? GO:0003735 ... P60494 25132179
    36822 1vy5:B2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    36823 1vy5:B3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    36824 1vy5:B3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    36825 1vy5:B3 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    36826 1vy5:B3 (2.55) BS04 MG ? GO:0003735 ... Q5SHQ6 25132179
    36827 1vy5:B4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    36828 1vy5:B4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    36829 1vy5:B5 (2.55) BS01 rna ? GO:0003735 ... P80339 25132179
    36830 1vy5:B5 (2.55) BS02 MG ? GO:0003735 ... P80339 25132179
    36831 1vy5:B5 (2.55) BS03 MG ? GO:0003735 ... P80339 25132179
    36832 1vy5:B5 (2.55) BS04 ZN ? GO:0003735 ... P80339 25132179
    36833 1vy5:B6 (2.55) BS01 rna ? GO:0000049 ... P35871 25132179
    36834 1vy5:B6 (2.55) BS02 MG ? GO:0000049 ... P35871 25132179
    36835 1vy5:B6 (2.55) BS03 ZN ? GO:0000049 ... P35871 25132179
    36836 1vy5:B7 (2.55) BS01 rna ? GO:0003735 ... P80340 25132179
    36837 1vy5:B7 (2.55) BS02 MG ? GO:0003735 ... P80340 25132179
    36838 1vy5:B7 (2.55) BS03 MG ? GO:0003735 ... P80340 25132179
    36839 1vy5:B7 (2.55) BS04 MG ? GO:0003735 ... P80340 25132179
    36840 1vy5:B7 (2.55) BS05 MG ? GO:0003735 ... P80340 25132179
    36841 1vy5:B8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    36842 1vy5:B8 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 25132179
    36843 1vy5:B8 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 25132179
    36844 1vy5:B9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    36845 1vy5:B9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    36846 1vy5:BD (2.55) BS01 rna ? GO:0002181 ... P60405 25132179
    36847 1vy5:BD (2.55) BS02 rna ? GO:0002181 ... P60405 25132179
    36848 1vy5:BD (2.55) BS03 MG ? GO:0002181 ... P60405 25132179
    36849 1vy5:BD (2.55) BS04 MG ? GO:0002181 ... P60405 25132179
    36850 1vy5:BD (2.55) BS05 MG ? GO:0002181 ... P60405 25132179
    36851 1vy5:BD (2.55) BS06 MG ? GO:0002181 ... P60405 25132179
    36852 1vy5:BD (2.55) BS07 MG ? GO:0002181 ... P60405 25132179
    36853 1vy5:BD (2.55) BS08 MG ? GO:0002181 ... P60405 25132179
    36854 1vy5:BD (2.55) BS09 MG ? GO:0002181 ... P60405 25132179
    36855 1vy5:BD (2.55) BS10 MG ? GO:0002181 ... P60405 25132179
    36856 1vy5:BD (2.55) BS11 MG ? GO:0002181 ... P60405 25132179
    36857 1vy5:BE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    36858 1vy5:BE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    36859 1vy5:BE (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    36860 1vy5:BE (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 25132179
    36861 1vy5:BF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    36862 1vy5:BF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    36863 1vy5:BF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    36864 1vy5:BF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    36865 1vy5:BF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    36866 1vy5:BF (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    36867 1vy5:BF (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 25132179
    36868 1vy5:BF (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 25132179
    36869 1vy5:BF (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 25132179
    36870 1vy5:BF (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 25132179
    36871 1vy5:BG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    36872 1vy5:BG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    36873 1vy5:BG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    36874 1vy5:BG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    36875 1vy5:BG (2.55) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    36876 1vy5:BH (2.55) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    36877 1vy5:BI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    36878 1vy5:BN (2.55) BS01 rna ? GO:0003729 ... P60488 25132179
    36879 1vy5:BN (2.55) BS02 MG ? GO:0003729 ... P60488 25132179
    36880 1vy5:BN (2.55) BS03 MG ? GO:0003729 ... P60488 25132179
    36881 1vy5:BN (2.55) BS04 MG ? GO:0003729 ... P60488 25132179
    36882 1vy5:BO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    36883 1vy5:BO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    36884 1vy5:BP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    36885 1vy5:BP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    36886 1vy5:BP (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    36887 1vy5:BQ (2.55) BS01 rna ? GO:0000049 ... P60489 25132179
    36888 1vy5:BQ (2.55) BS02 rna ? GO:0000049 ... P60489 25132179
    36889 1vy5:BQ (2.55) BS03 rna ? GO:0000049 ... P60489 25132179
    36890 1vy5:BQ (2.55) BS04 MG ? GO:0000049 ... P60489 25132179
    36891 1vy5:BQ (2.55) BS05 MG ? GO:0000049 ... P60489 25132179
    36892 1vy5:BQ (2.55) BS06 MG ? GO:0000049 ... P60489 25132179
    36893 1vy5:BQ (2.55) BS07 MG ? GO:0000049 ... P60489 25132179
    36894 1vy5:BR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    36895 1vy5:BR (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    36896 1vy5:BR (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    36897 1vy5:BS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    36898 1vy5:BS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    36899 1vy5:BT (2.55) BS01 rna ? GO:0003735 ... P60490 25132179
    36900 1vy5:BT (2.55) BS02 rna ? GO:0003735 ... P60490 25132179
    36901 1vy5:BU (2.55) BS01 rna ? GO:0000027 ... P60491 25132179
    36902 1vy5:BU (2.55) BS02 MG ? GO:0000027 ... P60491 25132179
    36903 1vy5:BU (2.55) BS03 MG ? GO:0000027 ... P60491 25132179
    36904 1vy5:BU (2.55) BS04 MG ? GO:0000027 ... P60491 25132179
    36905 1vy5:BU (2.55) BS05 MG ? GO:0000027 ... P60491 25132179
    36906 1vy5:BU (2.55) BS06 MG ? GO:0000027 ... P60491 25132179
    36907 1vy5:BU (2.55) BS07 MG ? GO:0000027 ... P60491 25132179
    36908 1vy5:BU (2.55) BS08 MG ? GO:0000027 ... P60491 25132179
    36909 1vy5:BV (2.55) BS01 rna ? GO:0003723 ... P60492 25132179
    36910 1vy5:BV (2.55) BS02 MG ? GO:0003723 ... P60492 25132179
    36911 1vy5:BV (2.55) BS03 MG ? GO:0003723 ... P60492 25132179
    36912 1vy5:BV (2.55) BS04 MG ? GO:0003723 ... P60492 25132179
    36913 1vy5:BV (2.55) BS05 MG ? GO:0003723 ... P60492 25132179
    36914 1vy5:BV (2.55) BS06 MG ? GO:0003723 ... P60492 25132179
    36915 1vy5:BW (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    36916 1vy5:BW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    36917 1vy5:BW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    36918 1vy5:BW (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 25132179
    36919 1vy5:BX (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    36920 1vy5:BX (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    36921 1vy5:BX (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 25132179
    36922 1vy5:BY (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    36923 1vy5:BY (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    36924 1vy5:BZ (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    36925 1vy5:BZ (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    36926 1vy5:CB (2.55) BS01 rna ? GO:0003735 ... P80371 25132179
    36927 1vy5:CC (2.55) BS01 rna ? GO:0003676 ... P80372 25132179
    36928 1vy5:CD (2.55) BS01 rna ? GO:0003723 ... P80373 25132179
    36929 1vy5:CD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25132179
    36930 1vy5:CE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    36931 1vy5:CE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    36932 1vy5:CF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    36933 1vy5:CF (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    36934 1vy5:CG (2.55) BS01 rna ? GO:0000028 ... P17291 25132179
    36935 1vy5:CG (2.55) BS02 rna ? GO:0000028 ... P17291 25132179
    36936 1vy5:CH (2.55) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    36937 1vy5:CI (2.55) BS01 rna ? GO:0000049 ... P80374 25132179
    36938 1vy5:CI (2.55) BS02 rna ? GO:0000049 ... P80374 25132179
    36939 1vy5:CJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    36940 1vy5:CK (2.55) BS01 rna ? GO:0003735 ... P80376 25132179
    36941 1vy5:CK (2.55) BS02 MG ? GO:0003735 ... P80376 25132179
    36942 1vy5:CL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    36943 1vy5:CM (2.55) BS01 rna ? GO:0000049 ... P80377 25132179
    36944 1vy5:CM (2.55) BS02 rna ? GO:0000049 ... P80377 25132179
    36945 1vy5:CM (2.55) BS03 rna ? GO:0000049 ... P80377 25132179
    36946 1vy5:CN (2.55) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    36947 1vy5:CN (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    36948 1vy5:CO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    36949 1vy5:CO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    36950 1vy5:CP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    36951 1vy5:CQ (2.55) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    36952 1vy5:CR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    36953 1vy5:CS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    36954 1vy5:CT (2.55) BS01 rna ? GO:0003723 ... P80380 25132179
    36955 1vy5:CT (2.55) BS02 MG ? GO:0003723 ... P80380 25132179
    36956 1vy5:D0 (2.55) BS01 rna ? GO:0003735 ... P60493 25132179
    36957 1vy5:D0 (2.55) BS02 rna ? GO:0003735 ... P60493 25132179
    36958 1vy5:D1 (2.55) BS01 rna ? GO:0003735 ... P60494 25132179
    36959 1vy5:D1 (2.55) BS02 rna ? GO:0003735 ... P60494 25132179
    36960 1vy5:D2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    36961 1vy5:D3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    36962 1vy5:D3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    36963 1vy5:D4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    36964 1vy5:D4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    36965 1vy5:D5 (2.55) BS01 rna ? GO:0003735 ... P80339 25132179
    36966 1vy5:D5 (2.55) BS02 ZN ? GO:0003735 ... P80339 25132179
    36967 1vy5:D6 (2.55) BS01 rna ? GO:0000049 ... P35871 25132179
    36968 1vy5:D6 (2.55) BS02 ZN ? GO:0000049 ... P35871 25132179
    36969 1vy5:D7 (2.55) BS01 rna ? GO:0003735 ... P80340 25132179
    36970 1vy5:D8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    36971 1vy5:D9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    36972 1vy5:D9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    36973 1vy5:DD (2.55) BS01 rna ? GO:0002181 ... P60405 25132179
    36974 1vy5:DD (2.55) BS02 rna ? GO:0002181 ... P60405 25132179
    36975 1vy5:DD (2.55) BS03 MG ? GO:0002181 ... P60405 25132179
    36976 1vy5:DD (2.55) BS04 MG ? GO:0002181 ... P60405 25132179
    36977 1vy5:DD (2.55) BS05 MG ? GO:0002181 ... P60405 25132179
    36978 1vy5:DD (2.55) BS06 MG ? GO:0002181 ... P60405 25132179
    36979 1vy5:DD (2.55) BS07 MG ? GO:0002181 ... P60405 25132179
    36980 1vy5:DD (2.55) BS08 MG ? GO:0002181 ... P60405 25132179
    36981 1vy5:DE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    36982 1vy5:DE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    36983 1vy5:DF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    36984 1vy5:DF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    36985 1vy5:DF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    36986 1vy5:DF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    36987 1vy5:DF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    36988 1vy5:DG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    36989 1vy5:DG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    36990 1vy5:DG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    36991 1vy5:DG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    36992 1vy5:DH (2.55) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    36993 1vy5:DI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    36994 1vy5:DN (2.55) BS01 rna ? GO:0003729 ... P60488 25132179
    36995 1vy5:DO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    36996 1vy5:DO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    36997 1vy5:DP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    36998 1vy5:DP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    36999 1vy5:DQ (2.55) BS01 rna ? GO:0000049 ... P60489 25132179
    37000 1vy5:DQ (2.55) BS02 rna ? GO:0000049 ... P60489 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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