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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    36201 1vql:C (2.3) BS01 rna ? GO:0003723 ... P12735 16285925
    36202 1vql:D (2.3) BS01 rna ? GO:0000049 ... P14124 16285925
    36203 1vql:D (2.3) BS02 rna ? GO:0000049 ... P14124 16285925
    36204 1vql:E (2.3) BS01 rna ? GO:0002181 ... P14135 16285925
    36205 1vql:F (2.3) BS01 rna ? GO:0001682 ... P12743 16285925
    36206 1vql:H (2.3) BS01 rna ? GO:0000027 ... P60617 16285925
    36207 1vql:I (2.3) BS01 rna ? GO:0003735 ... P14122 16285925
    36208 1vql:J (2.3) BS01 rna ? GO:0003729 ... P29198 16285925
    36209 1vql:K (2.3) BS01 rna ? GO:0003735 ... P22450 16285925
    36210 1vql:L (2.3) BS01 rna ? GO:0003735 ... P12737 16285925
    36211 1vql:M (2.3) BS01 rna ? GO:0002181 ... P60618 16285925
    36212 1vql:N (2.3) BS01 rna ? GO:0000027 ... P14123 16285925
    36213 1vql:N (2.3) BS02 rna ? GO:0000027 ... P14123 16285925
    36214 1vql:O (2.3) BS01 rna ? GO:0003723 ... P12733 16285925
    36215 1vql:P (2.3) BS01 rna ? GO:0003723 ... P14119 16285925
    36216 1vql:Q (2.3) BS01 rna ? GO:0003735 ... P12734 16285925
    36217 1vql:Q (2.3) BS02 rna ? GO:0003735 ... P12734 16285925
    36218 1vql:R (2.3) BS01 rna ? GO:0002181 ... P10970 16285925
    36219 1vql:S (2.3) BS01 rna ? GO:0000027 ... P12732 16285925
    36220 1vql:T (2.3) BS01 rna ? GO:0002181 ... P10972 16285925
    36221 1vql:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    36222 1vql:U (2.3) BS01 rna ? GO:0003735 ... P14116 16285925
    36223 1vql:V (2.3) BS01 rna ? GO:0003735 ... P10971 16285925
    36224 1vql:W (2.3) BS01 rna ? GO:0000463 ... P14121 16285925
    36225 1vql:W (2.3) BS02 rna ? GO:0000463 ... P14121 16285925
    36226 1vql:X (2.3) BS01 rna ? GO:0002181 ... P18138 16285925
    36227 1vql:Y (2.3) BS01 rna ? GO:0000166 ... P12736 16285925
    36228 1vql:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    36229 1vql:Z (2.3) BS01 rna ? GO:0003735 ... P60619 16285925
    36230 1vqm:1 (2.3) BS01 rna ? GO:0003723 ... P32410 16285925
    36231 1vqm:2 (2.3) BS01 rna ? GO:0003735 ... P22452 16285925
    36232 1vqm:3 (2.3) BS01 rna ? GO:0000049 ... P32411 16285925
    36233 1vqm:A (2.3) BS01 rna ? GO:0002181 ... P20276 16285925
    36234 1vqm:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    36235 1vqm:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    36236 1vqm:B (2.3) BS01 rna ? GO:0003723 ... P20279 16285925
    36237 1vqm:C (2.3) BS01 rna ? GO:0003723 ... P12735 16285925
    36238 1vqm:D (2.3) BS01 rna ? GO:0000049 ... P14124 16285925
    36239 1vqm:D (2.3) BS02 rna ? GO:0000049 ... P14124 16285925
    36240 1vqm:E (2.3) BS01 rna ? GO:0002181 ... P14135 16285925
    36241 1vqm:F (2.3) BS01 rna ? GO:0001682 ... P12743 16285925
    36242 1vqm:H (2.3) BS01 rna ? GO:0000027 ... P60617 16285925
    36243 1vqm:I (2.3) BS01 rna ? GO:0003735 ... P14122 16285925
    36244 1vqm:J (2.3) BS01 rna ? GO:0003729 ... P29198 16285925
    36245 1vqm:K (2.3) BS01 rna ? GO:0003735 ... P22450 16285925
    36246 1vqm:L (2.3) BS01 rna ? GO:0003735 ... P12737 16285925
    36247 1vqm:M (2.3) BS01 rna ? GO:0002181 ... P60618 16285925
    36248 1vqm:N (2.3) BS01 rna ? GO:0000027 ... P14123 16285925
    36249 1vqm:N (2.3) BS02 rna ? GO:0000027 ... P14123 16285925
    36250 1vqm:O (2.3) BS01 rna ? GO:0003723 ... P12733 16285925
    36251 1vqm:P (2.3) BS01 rna ? GO:0003723 ... P14119 16285925
    36252 1vqm:Q (2.3) BS01 rna ? GO:0003735 ... P12734 16285925
    36253 1vqm:Q (2.3) BS02 rna ? GO:0003735 ... P12734 16285925
    36254 1vqm:R (2.3) BS01 rna ? GO:0002181 ... P10970 16285925
    36255 1vqm:S (2.3) BS01 rna ? GO:0000027 ... P12732 16285925
    36256 1vqm:T (2.3) BS01 rna ? GO:0002181 ... P10972 16285925
    36257 1vqm:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    36258 1vqm:U (2.3) BS01 rna ? GO:0003735 ... P14116 16285925
    36259 1vqm:V (2.3) BS01 rna ? GO:0003735 ... P10971 16285925
    36260 1vqm:W (2.3) BS01 rna ? GO:0000463 ... P14121 16285925
    36261 1vqm:W (2.3) BS02 rna ? GO:0000463 ... P14121 16285925
    36262 1vqm:X (2.3) BS01 rna ? GO:0002181 ... P18138 16285925
    36263 1vqm:Y (2.3) BS01 rna ? GO:0000166 ... P12736 16285925
    36264 1vqm:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    36265 1vqm:Z (2.3) BS01 rna ? GO:0003735 ... P60619 16285925
    36266 1vqn:1 (2.4) BS01 rna ? GO:0003723 ... P32410 16306996
    36267 1vqn:2 (2.4) BS01 rna ? GO:0003735 ... P22452 16306996
    36268 1vqn:3 (2.4) BS01 rna ? GO:0000049 ... P32411 16306996
    36269 1vqn:A (2.4) BS01 rna ? GO:0002181 ... P20276 16306996
    36270 1vqn:A (2.4) BS02 MG ? GO:0002181 ... P20276 16306996
    36271 1vqn:A (2.4) BS03 MG ? GO:0002181 ... P20276 16306996
    36272 1vqn:B (2.4) BS01 rna ? GO:0003723 ... P20279 16306996
    36273 1vqn:C (2.4) BS01 rna ? GO:0003723 ... P12735 16306996
    36274 1vqn:D (2.4) BS01 rna ? GO:0000049 ... P14124 16306996
    36275 1vqn:D (2.4) BS02 rna ? GO:0000049 ... P14124 16306996
    36276 1vqn:E (2.4) BS01 rna ? GO:0002181 ... P14135 16306996
    36277 1vqn:F (2.4) BS01 rna ? GO:0001682 ... P12743 16306996
    36278 1vqn:H (2.4) BS01 rna ? GO:0000027 ... P60617 16306996
    36279 1vqn:I (2.4) BS01 rna ? GO:0003735 ... P14122 16306996
    36280 1vqn:J (2.4) BS01 rna ? GO:0003729 ... P29198 16306996
    36281 1vqn:K (2.4) BS01 rna ? GO:0003735 ... P22450 16306996
    36282 1vqn:L (2.4) BS01 rna ? GO:0003735 ... P12737 16306996
    36283 1vqn:M (2.4) BS01 rna ? GO:0002181 ... P60618 16306996
    36284 1vqn:N (2.4) BS01 rna ? GO:0000027 ... P14123 16306996
    36285 1vqn:N (2.4) BS02 rna ? GO:0000027 ... P14123 16306996
    36286 1vqn:O (2.4) BS01 rna ? GO:0003723 ... P12733 16306996
    36287 1vqn:P (2.4) BS01 rna ? GO:0003723 ... P14119 16306996
    36288 1vqn:Q (2.4) BS01 rna ? GO:0003735 ... P12734 16306996
    36289 1vqn:Q (2.4) BS02 rna ? GO:0003735 ... P12734 16306996
    36290 1vqn:R (2.4) BS01 rna ? GO:0002181 ... P10970 16306996
    36291 1vqn:S (2.4) BS01 rna ? GO:0000027 ... P12732 16306996
    36292 1vqn:T (2.4) BS01 rna ? GO:0002181 ... P10972 16306996
    36293 1vqn:T (2.4) BS02 MG ? GO:0002181 ... P10972 16306996
    36294 1vqn:U (2.4) BS01 rna ? GO:0003735 ... P14116 16306996
    36295 1vqn:V (2.4) BS01 rna ? GO:0003735 ... P10971 16306996
    36296 1vqn:W (2.4) BS01 rna ? GO:0000463 ... P14121 16306996
    36297 1vqn:W (2.4) BS02 rna ? GO:0000463 ... P14121 16306996
    36298 1vqn:X (2.4) BS01 rna ? GO:0002181 ... P18138 16306996
    36299 1vqn:Y (2.4) BS01 rna ? GO:0000166 ... P12736 16306996
    36300 1vqn:Y (2.4) BS02 MG ? GO:0000166 ... P12736 16306996
    36301 1vqn:Z (2.4) BS01 rna ? GO:0003735 ... P60619 16306996
    36302 1vqo:1 (2.2) BS01 rna ? GO:0003723 ... P32410 16285925
    36303 1vqo:2 (2.2) BS01 rna ? GO:0003735 ... P22452 16285925
    36304 1vqo:3 (2.2) BS01 rna ? GO:0000049 ... P32411 16285925
    36305 1vqo:A (2.2) BS01 rna ? GO:0002181 ... P20276 16285925
    36306 1vqo:A (2.2) BS02 MG ? GO:0002181 ... P20276 16285925
    36307 1vqo:A (2.2) BS03 MG ? GO:0002181 ... P20276 16285925
    36308 1vqo:B (2.2) BS01 rna ? GO:0003723 ... P20279 16285925
    36309 1vqo:C (2.2) BS01 rna ? GO:0003723 ... P12735 16285925
    36310 1vqo:D (2.2) BS01 rna ? GO:0000049 ... P14124 16285925
    36311 1vqo:D (2.2) BS02 rna ? GO:0000049 ... P14124 16285925
    36312 1vqo:E (2.2) BS01 rna ? GO:0002181 ... P14135 16285925
    36313 1vqo:F (2.2) BS01 rna ? GO:0001682 ... P12743 16285925
    36314 1vqo:H (2.2) BS01 rna ? GO:0000027 ... P60617 16285925
    36315 1vqo:I (2.2) BS01 rna ? GO:0003735 ... P14122 16285925
    36316 1vqo:J (2.2) BS01 rna ? GO:0003729 ... P29198 16285925
    36317 1vqo:K (2.2) BS01 rna ? GO:0003735 ... P22450 16285925
    36318 1vqo:L (2.2) BS01 rna ? GO:0003735 ... P12737 16285925
    36319 1vqo:M (2.2) BS01 rna ? GO:0002181 ... P60618 16285925
    36320 1vqo:N (2.2) BS01 rna ? GO:0000027 ... P14123 16285925
    36321 1vqo:N (2.2) BS02 rna ? GO:0000027 ... P14123 16285925
    36322 1vqo:O (2.2) BS01 rna ? GO:0003723 ... P12733 16285925
    36323 1vqo:P (2.2) BS01 rna ? GO:0003723 ... P14119 16285925
    36324 1vqo:Q (2.2) BS01 rna ? GO:0003735 ... P12734 16285925
    36325 1vqo:Q (2.2) BS02 rna ? GO:0003735 ... P12734 16285925
    36326 1vqo:R (2.2) BS01 rna ? GO:0002181 ... P10970 16285925
    36327 1vqo:S (2.2) BS01 rna ? GO:0000027 ... P12732 16285925
    36328 1vqo:T (2.2) BS01 rna ? GO:0002181 ... P10972 16285925
    36329 1vqo:T (2.2) BS02 MG ? GO:0002181 ... P10972 16285925
    36330 1vqo:U (2.2) BS01 rna ? GO:0003735 ... P14116 16285925
    36331 1vqo:V (2.2) BS01 rna ? GO:0003735 ... P10971 16285925
    36332 1vqo:W (2.2) BS01 rna ? GO:0000463 ... P14121 16285925
    36333 1vqo:W (2.2) BS02 rna ? GO:0000463 ... P14121 16285925
    36334 1vqo:X (2.2) BS01 rna ? GO:0002181 ... P18138 16285925
    36335 1vqo:Y (2.2) BS01 rna ? GO:0000166 ... P12736 16285925
    36336 1vqo:Y (2.2) BS02 MG ? GO:0000166 ... P12736 16285925
    36337 1vqo:Z (2.2) BS01 rna ? GO:0003735 ... P60619 16285925
    36338 1vqp:1 (2.25) BS01 rna ? GO:0003723 ... P32410 16285925
    36339 1vqp:2 (2.25) BS01 rna ? GO:0003735 ... P22452 16285925
    36340 1vqp:3 (2.25) BS01 rna ? GO:0000049 ... P32411 16285925
    36341 1vqp:A (2.25) BS01 rna ? GO:0002181 ... P20276 16285925
    36342 1vqp:A (2.25) BS02 MG ? GO:0002181 ... P20276 16285925
    36343 1vqp:A (2.25) BS03 MG ? GO:0002181 ... P20276 16285925
    36344 1vqp:B (2.25) BS01 rna ? GO:0003723 ... P20279 16285925
    36345 1vqp:C (2.25) BS01 rna ? GO:0003723 ... P12735 16285925
    36346 1vqp:D (2.25) BS01 rna ? GO:0000049 ... P14124 16285925
    36347 1vqp:D (2.25) BS02 rna ? GO:0000049 ... P14124 16285925
    36348 1vqp:E (2.25) BS01 rna ? GO:0002181 ... P14135 16285925
    36349 1vqp:F (2.25) BS01 rna ? GO:0001682 ... P12743 16285925
    36350 1vqp:H (2.25) BS01 rna ? GO:0000027 ... P60617 16285925
    36351 1vqp:I (2.25) BS01 rna ? GO:0003735 ... P14122 16285925
    36352 1vqp:J (2.25) BS01 rna ? GO:0003729 ... P29198 16285925
    36353 1vqp:K (2.25) BS01 rna ? GO:0003735 ... P22450 16285925
    36354 1vqp:L (2.25) BS01 rna ? GO:0003735 ... P12737 16285925
    36355 1vqp:M (2.25) BS01 rna ? GO:0002181 ... P60618 16285925
    36356 1vqp:N (2.25) BS01 rna ? GO:0000027 ... P14123 16285925
    36357 1vqp:N (2.25) BS02 rna ? GO:0000027 ... P14123 16285925
    36358 1vqp:O (2.25) BS01 rna ? GO:0003723 ... P12733 16285925
    36359 1vqp:P (2.25) BS01 rna ? GO:0003723 ... P14119 16285925
    36360 1vqp:Q (2.25) BS01 rna ? GO:0003735 ... P12734 16285925
    36361 1vqp:Q (2.25) BS02 rna ? GO:0003735 ... P12734 16285925
    36362 1vqp:R (2.25) BS01 rna ? GO:0002181 ... P10970 16285925
    36363 1vqp:S (2.25) BS01 rna ? GO:0000027 ... P12732 16285925
    36364 1vqp:T (2.25) BS01 rna ? GO:0002181 ... P10972 16285925
    36365 1vqp:T (2.25) BS02 MG ? GO:0002181 ... P10972 16285925
    36366 1vqp:U (2.25) BS01 rna ? GO:0003735 ... P14116 16285925
    36367 1vqp:V (2.25) BS01 rna ? GO:0003735 ... P10971 16285925
    36368 1vqp:W (2.25) BS01 rna ? GO:0000463 ... P14121 16285925
    36369 1vqp:W (2.25) BS02 rna ? GO:0000463 ... P14121 16285925
    36370 1vqp:X (2.25) BS01 rna ? GO:0002181 ... P18138 16285925
    36371 1vqp:Y (2.25) BS01 rna ? GO:0000166 ... P12736 16285925
    36372 1vqp:Y (2.25) BS02 MG ? GO:0000166 ... P12736 16285925
    36373 1vqp:Z (2.25) BS01 rna ? GO:0003735 ... P60619 16285925
    36374 1vqw:A (2.4) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    36375 1vqw:B (2.4) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    36376 1vrc:A (-1.00) BS01 PO3 2.7.1.191 GO:0005737 ... P69797 15788390
    36377 1vrc:B (-1.00) BS01 PO3 2.7.1.191 GO:0005737 ... P69797 15788390
    36378 1vrc:C (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 15788390
    36379 1vrc:D (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 15788390
    36380 1vrn:C (2.2) BS01 HEC ? GO:0005506 ... P07173 15858271
    36381 1vrn:C (2.2) BS02 HEC ? GO:0005506 ... P07173 15858271
    36382 1vrn:C (2.2) BS03 HEC ? GO:0005506 ... P07173 15858271
    36383 1vrn:C (2.2) BS04 HEC ? GO:0005506 ... P07173 15858271
    36384 1vrn:L (2.2) BS01 BCB ? GO:0009772 ... P06009 15858271
    36385 1vrn:L (2.2) BS02 BCB ? GO:0009772 ... P06009 15858271
    36386 1vrn:L (2.2) BS03 BPB ? GO:0009772 ... P06009 15858271
    36387 1vrn:L (2.2) BS04 UQ7 ? GO:0009772 ... P06009 15858271
    36388 1vrn:L (2.2) BS05 FE2 ? GO:0009772 ... P06009 15858271
    36389 1vrn:L (2.2) BS06 BCB ? GO:0009772 ... P06009 15858271
    36390 1vrn:L (2.2) BS07 BPB ? GO:0009772 ... P06009 15858271
    36391 1vrn:L (2.2) BS08 MQ9 ? GO:0009772 ... P06009 15858271
    36392 1vrn:M (2.2) BS01 BCB ? GO:0009772 ... P06010 15858271
    36393 1vrn:M (2.2) BS02 BPB ? GO:0009772 ... P06010 15858271
    36394 1vrn:M (2.2) BS03 FE2 ? GO:0009772 ... P06010 15858271
    36395 1vrn:M (2.2) BS04 BCB ? GO:0009772 ... P06010 15858271
    36396 1vrn:M (2.2) BS05 BCB ? GO:0009772 ... P06010 15858271
    36397 1vrn:M (2.2) BS06 BPB ? GO:0009772 ... P06010 15858271
    36398 1vrn:M (2.2) BS07 MQ9 ? GO:0009772 ... P06010 15858271
    36399 1vrn:M (2.2) BS08 NS5 ? GO:0009772 ... P06010 15858271
    36400 1vrp:A (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P04414 12437342
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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