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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    36001 1vq5:P (2.6) BS01 rna ? GO:0003723 ... P14119 16285925
    36002 1vq5:Q (2.6) BS01 rna ? GO:0003735 ... P12734 16285925
    36003 1vq5:Q (2.6) BS02 rna ? GO:0003735 ... P12734 16285925
    36004 1vq5:R (2.6) BS01 rna ? GO:0002181 ... P10970 16285925
    36005 1vq5:S (2.6) BS01 rna ? GO:0000027 ... P12732 16285925
    36006 1vq5:T (2.6) BS01 rna ? GO:0002181 ... P10972 16285925
    36007 1vq5:T (2.6) BS02 MG ? GO:0002181 ... P10972 16285925
    36008 1vq5:U (2.6) BS01 rna ? GO:0003735 ... P14116 16285925
    36009 1vq5:V (2.6) BS01 rna ? GO:0003735 ... P10971 16285925
    36010 1vq5:W (2.6) BS01 rna ? GO:0000463 ... P14121 16285925
    36011 1vq5:W (2.6) BS02 rna ? GO:0000463 ... P14121 16285925
    36012 1vq5:X (2.6) BS01 rna ? GO:0002181 ... P18138 16285925
    36013 1vq5:Y (2.6) BS01 rna ? GO:0000166 ... P12736 16285925
    36014 1vq5:Y (2.6) BS02 MG ? GO:0000166 ... P12736 16285925
    36015 1vq5:Z (2.6) BS01 rna ? GO:0003735 ... P60619 16285925
    36016 1vq6:1 (2.7) BS01 rna ? GO:0003723 ... P32410 16306996
    36017 1vq6:2 (2.7) BS01 rna ? GO:0003735 ... P22452 16306996
    36018 1vq6:3 (2.7) BS01 rna ? GO:0000049 ... P32411 16306996
    36019 1vq6:3 (2.7) BS02 MG ? GO:0000049 ... P32411 16306996
    36020 1vq6:A (2.7) BS01 rna ? GO:0002181 ... P20276 16306996
    36021 1vq6:A (2.7) BS02 MG ? GO:0002181 ... P20276 16306996
    36022 1vq6:B (2.7) BS01 rna ? GO:0003723 ... P20279 16306996
    36023 1vq6:C (2.7) BS01 rna ? GO:0003723 ... P12735 16306996
    36024 1vq6:D (2.7) BS01 rna ? GO:0000049 ... P14124 16306996
    36025 1vq6:D (2.7) BS02 rna ? GO:0000049 ... P14124 16306996
    36026 1vq6:E (2.7) BS01 rna ? GO:0002181 ... P14135 16306996
    36027 1vq6:F (2.7) BS01 rna ? GO:0001682 ... P12743 16306996
    36028 1vq6:H (2.7) BS01 rna ? GO:0000027 ... P60617 16306996
    36029 1vq6:I (2.7) BS01 rna ? GO:0003735 ... P14122 16306996
    36030 1vq6:J (2.7) BS01 rna ? GO:0003729 ... P29198 16306996
    36031 1vq6:K (2.7) BS01 rna ? GO:0003735 ... P22450 16306996
    36032 1vq6:L (2.7) BS01 rna ? GO:0003735 ... P12737 16306996
    36033 1vq6:M (2.7) BS01 rna ? GO:0002181 ... P60618 16306996
    36034 1vq6:N (2.7) BS01 rna ? GO:0000027 ... P14123 16306996
    36035 1vq6:N (2.7) BS02 rna ? GO:0000027 ... P14123 16306996
    36036 1vq6:O (2.7) BS01 rna ? GO:0003723 ... P12733 16306996
    36037 1vq6:P (2.7) BS01 rna ? GO:0003723 ... P14119 16306996
    36038 1vq6:Q (2.7) BS01 rna ? GO:0003735 ... P12734 16306996
    36039 1vq6:Q (2.7) BS02 rna ? GO:0003735 ... P12734 16306996
    36040 1vq6:R (2.7) BS01 rna ? GO:0002181 ... P10970 16306996
    36041 1vq6:S (2.7) BS01 rna ? GO:0000027 ... P12732 16306996
    36042 1vq6:T (2.7) BS01 rna ? GO:0002181 ... P10972 16306996
    36043 1vq6:T (2.7) BS02 MG ? GO:0002181 ... P10972 16306996
    36044 1vq6:U (2.7) BS01 rna ? GO:0003735 ... P14116 16306996
    36045 1vq6:V (2.7) BS01 rna ? GO:0003735 ... P10971 16306996
    36046 1vq6:W (2.7) BS01 rna ? GO:0000463 ... P14121 16306996
    36047 1vq6:W (2.7) BS02 rna ? GO:0000463 ... P14121 16306996
    36048 1vq6:X (2.7) BS01 rna ? GO:0002181 ... P18138 16306996
    36049 1vq6:Y (2.7) BS01 rna ? GO:0000166 ... P12736 16306996
    36050 1vq6:Y (2.7) BS02 MG ? GO:0000166 ... P12736 16306996
    36051 1vq6:Z (2.7) BS01 rna ? GO:0003735 ... P60619 16306996
    36052 1vq7:1 (2.5) BS01 rna ? GO:0003723 ... P32410 16306996
    36053 1vq7:2 (2.5) BS01 rna ? GO:0003735 ... P22452 16306996
    36054 1vq7:3 (2.5) BS01 rna ? GO:0000049 ... P32411 16306996
    36055 1vq7:3 (2.5) BS02 MG ? GO:0000049 ... P32411 16306996
    36056 1vq7:A (2.5) BS01 rna ? GO:0002181 ... P20276 16306996
    36057 1vq7:B (2.5) BS01 rna ? GO:0003723 ... P20279 16306996
    36058 1vq7:C (2.5) BS01 rna ? GO:0003723 ... P12735 16306996
    36059 1vq7:D (2.5) BS01 rna ? GO:0000049 ... P14124 16306996
    36060 1vq7:D (2.5) BS02 rna ? GO:0000049 ... P14124 16306996
    36061 1vq7:E (2.5) BS01 rna ? GO:0002181 ... P14135 16306996
    36062 1vq7:F (2.5) BS01 rna ? GO:0001682 ... P12743 16306996
    36063 1vq7:H (2.5) BS01 rna ? GO:0000027 ... P60617 16306996
    36064 1vq7:I (2.5) BS01 rna ? GO:0003735 ... P14122 16306996
    36065 1vq7:J (2.5) BS01 rna ? GO:0003729 ... P29198 16306996
    36066 1vq7:K (2.5) BS01 rna ? GO:0003735 ... P22450 16306996
    36067 1vq7:L (2.5) BS01 rna ? GO:0003735 ... P12737 16306996
    36068 1vq7:M (2.5) BS01 rna ? GO:0002181 ... P60618 16306996
    36069 1vq7:N (2.5) BS01 rna ? GO:0000027 ... P14123 16306996
    36070 1vq7:N (2.5) BS02 rna ? GO:0000027 ... P14123 16306996
    36071 1vq7:O (2.5) BS01 rna ? GO:0003723 ... P12733 16306996
    36072 1vq7:P (2.5) BS01 rna ? GO:0003723 ... P14119 16306996
    36073 1vq7:Q (2.5) BS01 rna ? GO:0003735 ... P12734 16306996
    36074 1vq7:Q (2.5) BS02 rna ? GO:0003735 ... P12734 16306996
    36075 1vq7:R (2.5) BS01 rna ? GO:0002181 ... P10970 16306996
    36076 1vq7:S (2.5) BS01 rna ? GO:0000027 ... P12732 16306996
    36077 1vq7:T (2.5) BS01 rna ? GO:0002181 ... P10972 16306996
    36078 1vq7:T (2.5) BS02 MG ? GO:0002181 ... P10972 16306996
    36079 1vq7:U (2.5) BS01 rna ? GO:0003735 ... P14116 16306996
    36080 1vq7:V (2.5) BS01 rna ? GO:0003735 ... P10971 16306996
    36081 1vq7:W (2.5) BS01 rna ? GO:0000463 ... P14121 16306996
    36082 1vq7:W (2.5) BS02 rna ? GO:0000463 ... P14121 16306996
    36083 1vq7:X (2.5) BS01 rna ? GO:0002181 ... P18138 16306996
    36084 1vq7:Y (2.5) BS01 rna ? GO:0000166 ... P12736 16306996
    36085 1vq7:Y (2.5) BS02 MG ? GO:0000166 ... P12736 16306996
    36086 1vq7:Z (2.5) BS01 rna ? GO:0003735 ... P60619 16306996
    36087 1vq8:1 (2.2) BS01 rna ? GO:0003723 ... P32410 16285925
    36088 1vq8:2 (2.2) BS01 rna ? GO:0003735 ... P22452 16285925
    36089 1vq8:3 (2.2) BS01 rna ? GO:0000049 ... P32411 16285925
    36090 1vq8:A (2.2) BS01 rna ? GO:0002181 ... P20276 16285925
    36091 1vq8:A (2.2) BS02 MG ? GO:0002181 ... P20276 16285925
    36092 1vq8:B (2.2) BS01 rna ? GO:0003723 ... P20279 16285925
    36093 1vq8:C (2.2) BS01 rna ? GO:0003723 ... P12735 16285925
    36094 1vq8:D (2.2) BS01 rna ? GO:0000049 ... P14124 16285925
    36095 1vq8:D (2.2) BS02 rna ? GO:0000049 ... P14124 16285925
    36096 1vq8:E (2.2) BS01 rna ? GO:0002181 ... P14135 16285925
    36097 1vq8:F (2.2) BS01 rna ? GO:0001682 ... P12743 16285925
    36098 1vq8:H (2.2) BS01 rna ? GO:0000027 ... P60617 16285925
    36099 1vq8:I (2.2) BS01 rna ? GO:0003735 ... P14122 16285925
    36100 1vq8:J (2.2) BS01 rna ? GO:0003729 ... P29198 16285925
    36101 1vq8:K (2.2) BS01 rna ? GO:0003735 ... P22450 16285925
    36102 1vq8:L (2.2) BS01 rna ? GO:0003735 ... P12737 16285925
    36103 1vq8:M (2.2) BS01 rna ? GO:0002181 ... P60618 16285925
    36104 1vq8:N (2.2) BS01 rna ? GO:0000027 ... P14123 16285925
    36105 1vq8:N (2.2) BS02 rna ? GO:0000027 ... P14123 16285925
    36106 1vq8:O (2.2) BS01 rna ? GO:0003723 ... P12733 16285925
    36107 1vq8:P (2.2) BS01 rna ? GO:0003723 ... P14119 16285925
    36108 1vq8:Q (2.2) BS01 rna ? GO:0003735 ... P12734 16285925
    36109 1vq8:Q (2.2) BS02 rna ? GO:0003735 ... P12734 16285925
    36110 1vq8:R (2.2) BS01 rna ? GO:0002181 ... P10970 16285925
    36111 1vq8:S (2.2) BS01 rna ? GO:0000027 ... P12732 16285925
    36112 1vq8:T (2.2) BS01 rna ? GO:0002181 ... P10972 16285925
    36113 1vq8:T (2.2) BS02 MG ? GO:0002181 ... P10972 16285925
    36114 1vq8:U (2.2) BS01 rna ? GO:0003735 ... P14116 16285925
    36115 1vq8:V (2.2) BS01 rna ? GO:0003735 ... P10971 16285925
    36116 1vq8:W (2.2) BS01 rna ? GO:0000463 ... P14121 16285925
    36117 1vq8:W (2.2) BS02 rna ? GO:0000463 ... P14121 16285925
    36118 1vq8:X (2.2) BS01 rna ? GO:0002181 ... P18138 16285925
    36119 1vq8:Y (2.2) BS01 rna ? GO:0000166 ... P12736 16285925
    36120 1vq8:Y (2.2) BS02 MG ? GO:0000166 ... P12736 16285925
    36121 1vq8:Z (2.2) BS01 rna ? GO:0003735 ... P60619 16285925
    36122 1vq9:1 (2.4) BS01 rna ? GO:0003723 ... P32410 16285925
    36123 1vq9:2 (2.4) BS01 rna ? GO:0003735 ... P22452 16285925
    36124 1vq9:3 (2.4) BS01 rna ? GO:0000049 ... P32411 16285925
    36125 1vq9:A (2.4) BS01 rna ? GO:0002181 ... P20276 16285925
    36126 1vq9:A (2.4) BS02 MG ? GO:0002181 ... P20276 16285925
    36127 1vq9:B (2.4) BS01 rna ? GO:0003723 ... P20279 16285925
    36128 1vq9:C (2.4) BS01 rna ? GO:0003723 ... P12735 16285925
    36129 1vq9:D (2.4) BS01 rna ? GO:0000049 ... P14124 16285925
    36130 1vq9:D (2.4) BS02 rna ? GO:0000049 ... P14124 16285925
    36131 1vq9:E (2.4) BS01 rna ? GO:0002181 ... P14135 16285925
    36132 1vq9:F (2.4) BS01 rna ? GO:0001682 ... P12743 16285925
    36133 1vq9:H (2.4) BS01 rna ? GO:0000027 ... P60617 16285925
    36134 1vq9:H (2.4) BS02 rna ? GO:0000027 ... P60617 16285925
    36135 1vq9:I (2.4) BS01 rna ? GO:0003735 ... P14122 16285925
    36136 1vq9:J (2.4) BS01 rna ? GO:0003729 ... P29198 16285925
    36137 1vq9:K (2.4) BS01 rna ? GO:0003735 ... P22450 16285925
    36138 1vq9:L (2.4) BS01 rna ? GO:0003735 ... P12737 16285925
    36139 1vq9:M (2.4) BS01 rna ? GO:0002181 ... P60618 16285925
    36140 1vq9:N (2.4) BS01 rna ? GO:0000027 ... P14123 16285925
    36141 1vq9:N (2.4) BS02 rna ? GO:0000027 ... P14123 16285925
    36142 1vq9:O (2.4) BS01 rna ? GO:0003723 ... P12733 16285925
    36143 1vq9:P (2.4) BS01 rna ? GO:0003723 ... P14119 16285925
    36144 1vq9:Q (2.4) BS01 rna ? GO:0003735 ... P12734 16285925
    36145 1vq9:Q (2.4) BS02 rna ? GO:0003735 ... P12734 16285925
    36146 1vq9:R (2.4) BS01 rna ? GO:0002181 ... P10970 16285925
    36147 1vq9:S (2.4) BS01 rna ? GO:0000027 ... P12732 16285925
    36148 1vq9:T (2.4) BS01 rna ? GO:0002181 ... P10972 16285925
    36149 1vq9:T (2.4) BS02 MG ? GO:0002181 ... P10972 16285925
    36150 1vq9:U (2.4) BS01 rna ? GO:0003735 ... P14116 16285925
    36151 1vq9:V (2.4) BS01 rna ? GO:0003735 ... P10971 16285925
    36152 1vq9:W (2.4) BS01 rna ? GO:0000463 ... P14121 16285925
    36153 1vq9:W (2.4) BS02 rna ? GO:0000463 ... P14121 16285925
    36154 1vq9:X (2.4) BS01 rna ? GO:0002181 ... P18138 16285925
    36155 1vq9:Y (2.4) BS01 rna ? GO:0000166 ... P12736 16285925
    36156 1vq9:Y (2.4) BS02 MG ? GO:0000166 ... P12736 16285925
    36157 1vq9:Z (2.4) BS01 rna ? GO:0003735 ... P60619 16285925
    36158 1vqk:1 (2.3) BS01 rna ? GO:0003723 ... P32410 16285925
    36159 1vqk:2 (2.3) BS01 rna ? GO:0003735 ... P22452 16285925
    36160 1vqk:3 (2.3) BS01 rna ? GO:0000049 ... P32411 16285925
    36161 1vqk:A (2.3) BS01 rna ? GO:0002181 ... P20276 16285925
    36162 1vqk:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    36163 1vqk:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    36164 1vqk:B (2.3) BS01 rna ? GO:0003723 ... P20279 16285925
    36165 1vqk:C (2.3) BS01 rna ? GO:0003723 ... P12735 16285925
    36166 1vqk:D (2.3) BS01 rna ? GO:0000049 ... P14124 16285925
    36167 1vqk:D (2.3) BS02 rna ? GO:0000049 ... P14124 16285925
    36168 1vqk:E (2.3) BS01 rna ? GO:0002181 ... P14135 16285925
    36169 1vqk:F (2.3) BS01 rna ? GO:0001682 ... P12743 16285925
    36170 1vqk:H (2.3) BS01 rna ? GO:0000027 ... P60617 16285925
    36171 1vqk:I (2.3) BS01 rna ? GO:0003735 ... P14122 16285925
    36172 1vqk:J (2.3) BS01 rna ? GO:0003729 ... P29198 16285925
    36173 1vqk:K (2.3) BS01 rna ? GO:0003735 ... P22450 16285925
    36174 1vqk:L (2.3) BS01 rna ? GO:0003735 ... P12737 16285925
    36175 1vqk:M (2.3) BS01 rna ? GO:0002181 ... P60618 16285925
    36176 1vqk:N (2.3) BS01 rna ? GO:0000027 ... P14123 16285925
    36177 1vqk:N (2.3) BS02 rna ? GO:0000027 ... P14123 16285925
    36178 1vqk:O (2.3) BS01 rna ? GO:0003723 ... P12733 16285925
    36179 1vqk:P (2.3) BS01 rna ? GO:0003723 ... P14119 16285925
    36180 1vqk:Q (2.3) BS01 rna ? GO:0003735 ... P12734 16285925
    36181 1vqk:Q (2.3) BS02 rna ? GO:0003735 ... P12734 16285925
    36182 1vqk:R (2.3) BS01 rna ? GO:0002181 ... P10970 16285925
    36183 1vqk:S (2.3) BS01 rna ? GO:0000027 ... P12732 16285925
    36184 1vqk:T (2.3) BS01 rna ? GO:0002181 ... P10972 16285925
    36185 1vqk:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    36186 1vqk:U (2.3) BS01 rna ? GO:0003735 ... P14116 16285925
    36187 1vqk:V (2.3) BS01 rna ? GO:0003735 ... P10971 16285925
    36188 1vqk:W (2.3) BS01 rna ? GO:0000463 ... P14121 16285925
    36189 1vqk:W (2.3) BS02 rna ? GO:0000463 ... P14121 16285925
    36190 1vqk:X (2.3) BS01 rna ? GO:0002181 ... P18138 16285925
    36191 1vqk:Y (2.3) BS01 rna ? GO:0000166 ... P12736 16285925
    36192 1vqk:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    36193 1vqk:Z (2.3) BS01 rna ? GO:0003735 ... P60619 16285925
    36194 1vql:1 (2.3) BS01 rna ? GO:0003723 ... P32410 16285925
    36195 1vql:2 (2.3) BS01 rna ? GO:0003735 ... P22452 16285925
    36196 1vql:3 (2.3) BS01 rna ? GO:0000049 ... P32411 16285925
    36197 1vql:A (2.3) BS01 rna ? GO:0002181 ... P20276 16285925
    36198 1vql:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    36199 1vql:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    36200 1vql:B (2.3) BS01 rna ? GO:0003723 ... P20279 16285925
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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