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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    35801 1vix:B (2.5) BS02 ZN 3.4.11.4 GO:0004177 ... P29745 16021622
    35802 1vj3:A (2.1) BS01 NDP 1.5.1.3 GO:0004146 ... P16184 10736154
    35803 1vj3:A (2.1) BS02 TAB 1.5.1.3 GO:0004146 ... P16184 10736154 MOAD: ic50=0.17uM
    BindingDB: IC50=170nM
    35804 1vj5:A (2.35) BS01 MG 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 15096040
    35805 1vj5:A (2.35) BS02 PO4 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 15096040
    35806 1vj5:A (2.35) BS03 CIU 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 15096040 MOAD: ic50=0.12uM
    PDBbind: -logKd/Ki=6.92, IC50=0.12uM
    35807 1vjc:A (2.1) BS01 ATP 2.7.2.3 GO:0004618 ... Q7SIB7 15035615 MOAD: Kd=0.263mM
    PDBbind: -logKd/Ki=3.58, Kd=0.263mM
    35808 1vjd:A (1.9) BS01 ATP 2.7.2.3 GO:0004618 ... Q7SIB7 15035615 MOAD: Kd=0.286mM
    PDBbind: -logKd/Ki=3.54, Kd=0.286mM
    35809 1vji:A (2.003) BS01 FMN 1.3.1.42 GO:0005515 ... Q8LAH7 16080145
    35810 1vjm:A (2.3) BS01 RET ? GO:0005216 ... P02945 14532280
    35811 1vjo:A (1.7) BS01 PLP 2.6.1.44 GO:0004760 ... Q8YY48 15657930
    35812 1vjy:A (2.0) BS01 460 2.7.11.30 GO:0004672 ... P36897 15317461 MOAD: ic50=0.023uM
    PDBbind: -logKd/Ki=7.64, IC50=0.023uM
    35813 1vk5:A (1.604) BS01 CPS ? GO:0000419 ... Q9LUJ3 16511118
    35814 1vkg:A (2.2) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15242608
    35815 1vkg:A (2.2) BS02 CRI 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15242608
    35816 1vkg:A (2.2) BS03 CRI 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15242608
    35817 1vkg:B (2.2) BS01 CRI 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15242608
    35818 1vkg:B (2.2) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15242608
    35819 1vkg:B (2.2) BS03 CRI 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15242608
    35820 1vkj:A (2.5) BS01 SO4 2.8.2.23 GO:0005794 ... O35310 15060080
    35821 1vkj:A (2.5) BS02 A3P 2.8.2.23 GO:0005794 ... O35310 15060080 MOAD: Kd=14uM
    PDBbind: -logKd/Ki=4.85, Kd=14uM
    35822 1vkj:B (2.5) BS01 A3P 2.8.2.23 GO:0005794 ... O35310 15060080
    35823 1vkj:B (2.5) BS02 SO4 2.8.2.23 GO:0005794 ... O35310 15060080
    35824 1vkj:C (2.5) BS01 A3P 2.8.2.23 GO:0005794 ... O35310 15060080
    35825 1vkm:A (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35826 1vkm:A (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35827 1vkm:A (1.9) BS03 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35828 1vkm:B (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35829 1vkm:B (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35830 1vkm:C (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35831 1vkm:C (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35832 1vkm:C (1.9) BS03 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35833 1vkm:D (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35834 1vkm:D (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35835 1vkm:E (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35836 1vkm:E (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35837 1vkm:F (1.9) BS01 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35838 1vkm:F (1.9) BS02 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35839 1vkm:F (1.9) BS03 MN 4.2.1.70 GO:0001522 ... Q9X1H5 15822122
    35840 1vkq:A (1.6) BS01 CA 3.1.1.4 GO:0002227 ... P00593 15333929
    35841 1vkt:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 8951384
    35842 1vkx:A (2.9) BS01 dna ? GO:0003677 ... Q04207 9450761
    35843 1vkx:A (2.9) BS02 dna ? GO:0003677 ... Q04207 9450761
    35844 1vkx:B (2.9) BS01 dna ? GO:0003677 ... P25799 9450761
    35845 1vkx:B (2.9) BS02 dna ? GO:0003677 ... P25799 9450761
    35846 1vl0:A (2.05) BS01 NAI 1.1.1.133 GO:0000166 ... Q97GQ1 N/A
    35847 1vl0:B (2.05) BS01 NAI 1.1.1.133 GO:0000166 ... Q97GQ1 N/A
    35848 1vl0:C (2.05) BS01 NAI 1.1.1.133 GO:0000166 ... Q97GQ1 N/A
    35849 1vl9:A (0.97) BS01 CA 3.1.1.4 GO:0002227 ... P00593 16508077
    35850 1vl9:A (0.97) BS02 CA 3.1.1.4 GO:0002227 ... P00593 16508077
    35851 1vl9:A (0.97) BS03 CL 3.1.1.4 GO:0002227 ... P00593 16508077
    35852 1vlg:A (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    35853 1vlg:B (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    35854 1vlg:C (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    35855 1vlg:D (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    35856 1vlg:E (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    35857 1vlg:F (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    35858 1vlg:G (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    35859 1vlg:H (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    35860 1vlh:A (2.2) BS01 PNS 2.7.7.3 GO:0003824 ... Q9WZK0 N/A
    35861 1vlh:A (2.2) BS02 PNS 2.7.7.3 GO:0003824 ... Q9WZK0 N/A
    35862 1vlh:B (2.2) BS01 PNS 2.7.7.3 GO:0003824 ... Q9WZK0 N/A
    35863 1vlh:B (2.2) BS02 PNS 2.7.7.3 GO:0003824 ... Q9WZK0 N/A
    35864 1vlh:C (2.2) BS01 PNS 2.7.7.3 GO:0003824 ... Q9WZK0 N/A
    35865 1vlh:D (2.2) BS01 PNS 2.7.7.3 GO:0003824 ... Q9WZK0 N/A
    35866 1vlh:D (2.2) BS02 PNS 2.7.7.3 GO:0003824 ... Q9WZK0 N/A
    35867 1vlh:E (2.2) BS01 PNS 2.7.7.3 GO:0003824 ... Q9WZK0 N/A
    35868 1vlh:F (2.2) BS01 PNS 2.7.7.3 GO:0003824 ... Q9WZK0 N/A
    35869 1vlh:F (2.2) BS02 PNS 2.7.7.3 GO:0003824 ... Q9WZK0 N/A
    35870 1vlj:A (1.78) BS01 FE 1.1.1.- GO:0000166 ... Q9WZS7 N/A
    35871 1vlj:A (1.78) BS02 NAP 1.1.1.- GO:0000166 ... Q9WZS7 N/A
    35872 1vlj:B (1.78) BS01 FE 1.1.1.- GO:0000166 ... Q9WZS7 N/A
    35873 1vlj:B (1.78) BS02 NAP 1.1.1.- GO:0000166 ... Q9WZS7 N/A
    35874 1vln:A (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    35875 1vln:A (2.4) BS02 CA ? GO:0005537 ... P08902 8812975
    35876 1vln:B (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    35877 1vln:B (2.4) BS02 CA ? GO:0005537 ... P08902 8812975
    35878 1vln:C (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    35879 1vln:C (2.4) BS02 CA ? GO:0005537 ... P08902 8812975
    35880 1vln:D (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    35881 1vln:D (2.4) BS02 CA ? GO:0005537 ... P08902 8812975
    35882 1vln:E (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    35883 1vln:E (2.4) BS02 CA ? GO:0005537 ... P08902 8812975
    35884 1vln:F (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    35885 1vln:F (2.4) BS02 CA ? GO:0005537 ... P08902 8812975
    35886 1vln:G (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    35887 1vln:G (2.4) BS02 CA ? GO:0005537 ... P08902 8812975
    35888 1vln:H (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    35889 1vln:H (2.4) BS02 CA ? GO:0005537 ... P08902 8812975
    35890 1vlx:A (1.9) BS01 CO ? GO:0005507 ... P00282 9094740
    35891 1vlx:B (1.9) BS01 CO ? GO:0005507 ... P00282 9094740
    35892 1vlx:C (1.9) BS01 CO ? GO:0005507 ... P00282 9094740
    35893 1vlx:D (1.9) BS01 CO ? GO:0005507 ... P00282 9094740
    35894 1vm6:A (2.27) BS01 NAD 1.17.1.8 GO:0005737 ... Q9X1K8 N/A
    35895 1vm6:B (2.27) BS01 NAD 1.17.1.8 GO:0005737 ... Q9X1K8 N/A
    35896 1vm6:C (2.27) BS01 NAD 1.17.1.8 GO:0005737 ... Q9X1K8 N/A
    35897 1vm6:D (2.27) BS01 NAD 1.17.1.8 GO:0005737 ... Q9X1K8 N/A
    35898 1vnc:A (2.1) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 8552646
    35899 1vnc:A (2.1) BS02 AZI 1.11.1.10 GO:0004601 ... P49053 8552646
    35900 1vne:A (2.15) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    35901 1vnf:A (2.35) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    35902 1vng:A (2.2) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    35903 1vnh:A (2.11) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    35904 1vni:A (2.15) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    35905 1vns:A (1.66) BS01 SO4 1.11.1.10 GO:0004601 ... P49053 10499093
    35906 1vns:A (1.66) BS02 SO4 1.11.1.10 GO:0004601 ... P49053 10499093
    35907 1vol:B (2.7) BS01 dna ? GO:0003677 ... P28147 7675079
    35908 1vol:B (2.7) BS02 dna ? GO:0003677 ... P28147 7675079
    35909 1vom:A (1.9) BS01 MG ? GO:0003774 ... P08799 8611530
    35910 1vom:A (1.9) BS02 VO4 ? GO:0003774 ... P08799 8611530
    35911 1vom:A (1.9) BS03 ADP ? GO:0003774 ... P08799 8611530
    35912 1vot:A (2.5) BS01 HUP 3.1.1.7 GO:0001507 ... P04058 8989325 MOAD: Ki=250nM
    PDBbind: -logKd/Ki=6.60, Ki=250nM
    BindingDB: IC50=11.4nM
    35913 1vp3:A (1.9) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 9145102
    35914 1vp5:A (2.4) BS01 NAP 1.1.1.274 GO:0000166 ... Q9X0A2 N/A
    35915 1vp5:B (2.4) BS01 NAP 1.1.1.274 GO:0000166 ... Q9X0A2 N/A
    35916 1vp9:A (1.95) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 9145102
    35917 1vpa:A (2.67) BS01 CTP 2.7.7.60 GO:0003824 ... Q9X1B3 N/A
    35918 1vpa:B (2.67) BS01 CTP 2.7.7.60 GO:0003824 ... Q9X1B3 N/A
    35919 1vpm:A (1.66) BS01 COA 3.1.2.- GO:0005829 ... Q9KEQ1 N/A
    35920 1vpm:B (1.66) BS01 COA 3.1.2.- GO:0005829 ... Q9KEQ1 N/A
    35921 1vpm:C (1.66) BS01 COA 3.1.2.- GO:0005829 ... Q9KEQ1 N/A
    35922 1vpp:V (1.9) BS01 peptide ? GO:0008083 ... P15692 9922142
    35923 1vpp:W (1.9) BS01 peptide ? GO:0008083 ... P15692 9922142
    35924 1vps:A (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    35925 1vps:A (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    35926 1vps:A (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    35927 1vps:B (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    35928 1vps:B (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    35929 1vps:B (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    35930 1vps:C (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    35931 1vps:C (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    35932 1vps:C (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    35933 1vps:D (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    35934 1vps:D (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    35935 1vps:D (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    35936 1vps:E (1.9) BS01 GAL ? GO:0005198 ... P49302 9305654
    35937 1vps:E (1.9) BS02 SIA ? GO:0005198 ... P49302 9305654
    35938 1vps:E (1.9) BS03 SIA ? GO:0005198 ... P49302 9305654
    35939 1vpt:A (1.8) BS01 SAM 2.1.1.57 GO:0003723 ... P07617 8612277
    35940 1vpw:A (2.7) BS01 dna ? GO:0000976 ... P0ACP7 9628480
    35941 1vpw:A (2.7) BS02 HPA ? GO:0000976 ... P0ACP7 9628480
    35942 1vq0:A (2.2) BS01 ZN ? GO:0005737 ... Q9X1B4 16167343
    35943 1vq0:B (2.2) BS01 ZN ? GO:0005737 ... Q9X1B4 16167343
    35944 1vq4:1 (2.7) BS01 rna ? GO:0003723 ... P32410 16285925
    35945 1vq4:2 (2.7) BS01 rna ? GO:0003735 ... P22452 16285925
    35946 1vq4:3 (2.7) BS01 rna ? GO:0000049 ... P32411 16285925
    35947 1vq4:3 (2.7) BS02 MG ? GO:0000049 ... P32411 16285925
    35948 1vq4:A (2.7) BS01 rna ? GO:0002181 ... P20276 16285925
    35949 1vq4:A (2.7) BS02 MG ? GO:0002181 ... P20276 16285925
    35950 1vq4:B (2.7) BS01 rna ? GO:0003723 ... P20279 16285925
    35951 1vq4:C (2.7) BS01 rna ? GO:0003723 ... P12735 16285925
    35952 1vq4:D (2.7) BS01 rna ? GO:0000049 ... P14124 16285925
    35953 1vq4:D (2.7) BS02 rna ? GO:0000049 ... P14124 16285925
    35954 1vq4:E (2.7) BS01 rna ? GO:0002181 ... P14135 16285925
    35955 1vq4:F (2.7) BS01 rna ? GO:0001682 ... P12743 16285925
    35956 1vq4:H (2.7) BS01 rna ? GO:0000027 ... P60617 16285925
    35957 1vq4:I (2.7) BS01 rna ? GO:0003735 ... P14122 16285925
    35958 1vq4:J (2.7) BS01 rna ? GO:0003729 ... P29198 16285925
    35959 1vq4:K (2.7) BS01 rna ? GO:0003735 ... P22450 16285925
    35960 1vq4:L (2.7) BS01 rna ? GO:0003735 ... P12737 16285925
    35961 1vq4:M (2.7) BS01 rna ? GO:0002181 ... P60618 16285925
    35962 1vq4:N (2.7) BS01 rna ? GO:0000027 ... P14123 16285925
    35963 1vq4:N (2.7) BS02 rna ? GO:0000027 ... P14123 16285925
    35964 1vq4:O (2.7) BS01 rna ? GO:0003723 ... P12733 16285925
    35965 1vq4:P (2.7) BS01 rna ? GO:0003723 ... P14119 16285925
    35966 1vq4:Q (2.7) BS01 rna ? GO:0003735 ... P12734 16285925
    35967 1vq4:Q (2.7) BS02 rna ? GO:0003735 ... P12734 16285925
    35968 1vq4:R (2.7) BS01 rna ? GO:0002181 ... P10970 16285925
    35969 1vq4:S (2.7) BS01 rna ? GO:0000027 ... P12732 16285925
    35970 1vq4:T (2.7) BS01 rna ? GO:0002181 ... P10972 16285925
    35971 1vq4:T (2.7) BS02 MG ? GO:0002181 ... P10972 16285925
    35972 1vq4:U (2.7) BS01 rna ? GO:0003735 ... P14116 16285925
    35973 1vq4:V (2.7) BS01 rna ? GO:0003735 ... P10971 16285925
    35974 1vq4:W (2.7) BS01 rna ? GO:0000463 ... P14121 16285925
    35975 1vq4:W (2.7) BS02 rna ? GO:0000463 ... P14121 16285925
    35976 1vq4:X (2.7) BS01 rna ? GO:0002181 ... P18138 16285925
    35977 1vq4:Y (2.7) BS01 rna ? GO:0000166 ... P12736 16285925
    35978 1vq4:Y (2.7) BS02 MG ? GO:0000166 ... P12736 16285925
    35979 1vq4:Z (2.7) BS01 rna ? GO:0003735 ... P60619 16285925
    35980 1vq5:1 (2.6) BS01 rna ? GO:0003723 ... P32410 16285925
    35981 1vq5:2 (2.6) BS01 rna ? GO:0003735 ... P22452 16285925
    35982 1vq5:3 (2.6) BS01 rna ? GO:0000049 ... P32411 16285925
    35983 1vq5:3 (2.6) BS02 MG ? GO:0000049 ... P32411 16285925
    35984 1vq5:A (2.6) BS01 rna ? GO:0002181 ... P20276 16285925
    35985 1vq5:A (2.6) BS02 MG ? GO:0002181 ... P20276 16285925
    35986 1vq5:B (2.6) BS01 rna ? GO:0003723 ... P20279 16285925
    35987 1vq5:C (2.6) BS01 rna ? GO:0003723 ... P12735 16285925
    35988 1vq5:D (2.6) BS01 rna ? GO:0000049 ... P14124 16285925
    35989 1vq5:D (2.6) BS02 rna ? GO:0000049 ... P14124 16285925
    35990 1vq5:E (2.6) BS01 rna ? GO:0002181 ... P14135 16285925
    35991 1vq5:F (2.6) BS01 rna ? GO:0001682 ... P12743 16285925
    35992 1vq5:H (2.6) BS01 rna ? GO:0000027 ... P60617 16285925
    35993 1vq5:I (2.6) BS01 rna ? GO:0003735 ... P14122 16285925
    35994 1vq5:J (2.6) BS01 rna ? GO:0003729 ... P29198 16285925
    35995 1vq5:K (2.6) BS01 rna ? GO:0003735 ... P22450 16285925
    35996 1vq5:L (2.6) BS01 rna ? GO:0003735 ... P12737 16285925
    35997 1vq5:M (2.6) BS01 rna ? GO:0002181 ... P60618 16285925
    35998 1vq5:N (2.6) BS01 rna ? GO:0000027 ... P14123 16285925
    35999 1vq5:N (2.6) BS02 rna ? GO:0000027 ... P14123 16285925
    36000 1vq5:O (2.6) BS01 rna ? GO:0003723 ... P12733 16285925

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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