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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    34201 1ubs:B (1.9) BS02 PLP 4.2.1.20 GO:0000162 ... P0A2K1 9201907
    34202 1ubt:L (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    34203 1ubt:L (1.34) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    34204 1ubt:L (1.34) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    34205 1ubt:S (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    34206 1ubt:S (1.34) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    34207 1ubt:S (1.34) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    34208 1ubu:L (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    34209 1ubu:L (1.35) BS02 MG 1.12.2.1 GO:0008901 ... P21852 12296727
    34210 1ubu:L (1.35) BS03 FNE 1.12.2.1 GO:0008901 ... P21852 12296727
    34211 1ubu:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    34212 1ubu:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    34213 1ubu:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    34214 1ubw:A (2.5) BS01 MG 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    34215 1ubw:A (2.5) BS02 MG 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    34216 1ubw:A (2.5) BS03 GPP 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    34217 1ubx:A (2.5) BS01 MG 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    34218 1ubx:A (2.5) BS02 FPP 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    34219 1uby:A (2.4) BS01 MG 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    34220 1uby:A (2.4) BS02 MG 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    34221 1uby:A (2.4) BS03 DMA 2.5.1.1
    2.5.1.10
    GO:0004161 ... P08836 8986756
    34222 1ubz:A (2.0) BS01 GAL 3.2.1.17 GO:0003796 ... P61626 12720276
    34223 1uc0:A (1.85) BS01 GAL 3.2.1.17 GO:0003796 ... P00698 12720276
    34224 1uc9:A (2.38) BS01 ADP 6.3.2.43 GO:0003824 ... Q5SH23 12963379
    34225 1uc9:B (2.38) BS01 ADP 6.3.2.43 GO:0003824 ... Q5SH23 12963379
    34226 1uca:A (1.48) BS01 U2P 4.6.1.19 GO:0003723 ... P23540 10964705
    34227 1ucc:A (1.77) BS01 U3P 4.6.1.19 GO:0003723 ... P23540 10964705
    34228 1ucd:A (1.3) BS01 U5P 4.6.1.19 GO:0003723 ... P23540 N/A
    34229 1ucd:A (1.3) BS02 URA 4.6.1.19 GO:0003723 ... P23540 N/A
    34230 1ucn:A (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    34231 1ucn:A (2.0) BS02 CA 2.7.4.6 GO:0000287 ... P15531 12972261
    34232 1ucn:A (2.0) BS03 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    PDBbind: -logKd/Ki=5.22, Kd=6.0uM
    34233 1ucn:B (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    34234 1ucn:B (2.0) BS02 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    PDBbind: -logKd/Ki=5.22, Kd=6.0uM
    34235 1ucn:C (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    34236 1ucn:C (2.0) BS02 ADP 2.7.4.6 GO:0000287 ... P15531 12972261 MOAD: Kd=6uM
    34237 1ucq:A (2.4) BS01 RET ? GO:0005216 ... P02945 14672661
    34238 1uda:A (1.8) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9174344
    34239 1uda:A (1.8) BS02 UFG 5.1.3.2 GO:0003978 ... P09147 9174344 MOAD: Ki=1.4mM
    34240 1udb:A (1.65) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9174344
    34241 1udb:A (1.65) BS02 UFG 5.1.3.2 GO:0003978 ... P09147 9174344 MOAD: Ki=1.2mM
    34242 1udc:A (1.65) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 9174344
    34243 1udc:A (1.65) BS02 UFM 5.1.3.2 GO:0003978 ... P09147 9174344
    34244 1udv:A (1.85) BS01 ZN ? GO:0003676 ... Q97ZF4 12837780
    34245 1udw:A (2.6) BS01 CTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    34246 1udw:B (2.6) BS01 CTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    34247 1udy:A (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    34248 1udy:A (2.4) BS02 CS8 1.3.8.7 GO:0001889 ... P41367 12966080
    34249 1udy:A (2.4) BS03 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    34250 1udy:B (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    34251 1udy:B (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    34252 1udy:B (2.4) BS03 CS8 1.3.8.7 GO:0001889 ... P41367 12966080
    34253 1udy:C (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    34254 1udy:C (2.4) BS02 CS8 1.3.8.7 GO:0001889 ... P41367 12966080
    34255 1udy:C (2.4) BS03 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    34256 1udy:D (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    34257 1udy:D (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    34258 1udy:D (2.4) BS03 CS8 1.3.8.7 GO:0001889 ... P41367 12966080
    34259 1ue8:A (3.0) BS01 HEM 1.14.-.- GO:0004497 ... Q972I2 15219985
    34260 1uea:A (2.8) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    34261 1uea:A (2.8) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    34262 1uea:A (2.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    34263 1uea:A (2.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    34264 1uea:A (2.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    34265 1uea:C (2.8) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    34266 1uea:C (2.8) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9288970
    34267 1uea:C (2.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    34268 1uea:C (2.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    34269 1uea:C (2.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9288970
    34270 1ueh:A (1.73) BS01 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    34271 1ueh:A (1.73) BS02 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    34272 1ueh:B (1.73) BS01 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    34273 1ueh:B (1.73) BS02 SO4 2.5.1.31 GO:0000287 ... P60472 12756244
    34274 1ueh:B (1.73) BS03 OXN 2.5.1.31 GO:0000287 ... P60472 12756244
    34275 1ueh:B (1.73) BS04 OXN 2.5.1.31 GO:0000287 ... P60472 12756244
    34276 1uei:A (2.6) BS01 UTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    34277 1uei:B (2.6) BS01 UTP 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    34278 1uej:A (2.61) BS01 CTN 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    34279 1uej:B (2.61) BS01 CTN 2.7.1.48 GO:0004849 ... Q9BZX2 15130468
    34280 1uf2:A (3.5) BS01 peptide ? GO:0005198 ... P22472 14527391
    34281 1uf9:B (2.8) BS01 PO4 2.7.1.24 GO:0004140 ... Q56416 15526298
    34282 1uf9:C (2.8) BS01 ATP 2.7.1.24 GO:0004140 ... Q56416 15526298
    34283 1ufj:A (1.6) BS01 CZM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 15106972
    34284 1uga:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8987974
    34285 1ugb:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8987974
    34286 1ugb:A (2.0) BS02 AZI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8987974 BindingDB: Ki=1500000nM
    34287 1ugc:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8987974
    34288 1ugd:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8987974
    34289 1uge:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8987974
    34290 1ugf:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8987974
    34291 1ugf:A (2.0) BS02 AZI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8987974 BindingDB: Ki=1500000nM
    34292 1ugg:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8987974
    34293 1ugp:A (1.63) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 14717710
    34294 1ugp:A (1.63) BS02 BUA 4.2.1.84 GO:0003824 ... Q7SID2 14717710 PDBbind: -logKd/Ki=2.89, Ki=1.3mM
    34295 1ugr:A (1.8) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 14717710
    34296 1ugs:A (2.0) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 14717710
    34297 1ugw:A (1.7) BS01 peptide ? GO:0005575 ... P18670 12946359
    34298 1ugw:A (1.7) BS02 peptide ? GO:0005575 ... P18670 12946359
    34299 1ugw:A (1.7) BS03 peptide ? GO:0005575 ... P18670 12946359
    34300 1ugw:A (1.7) BS04 GAL ? GO:0005575 ... P18670 12946359 MOAD: Ka=1220M^-1
    34301 1ugw:C (1.7) BS01 peptide ? GO:0005575 ... P18670 12946359
    34302 1ugw:C (1.7) BS02 peptide ? GO:0005575 ... P18670 12946359
    34303 1ugw:C (1.7) BS03 peptide ? GO:0005575 ... P18670 12946359
    34304 1ugw:C (1.7) BS04 GAL ? GO:0005575 ... P18670 12946359 MOAD: Ka=1220M^-1
    34305 1ugw:E (1.7) BS01 peptide ? GO:0005575 ... P18670 12946359
    34306 1ugw:E (1.7) BS02 peptide ? GO:0005575 ... P18670 12946359
    34307 1ugw:E (1.7) BS03 peptide ? GO:0005575 ... P18670 12946359
    34308 1ugw:E (1.7) BS04 GAL ? GO:0005575 ... P18670 12946359 MOAD: Ka=1220M^-1
    34309 1ugw:G (1.7) BS01 peptide ? GO:0005575 ... P18670 12946359
    34310 1ugw:G (1.7) BS02 peptide ? GO:0005575 ... P18670 12946359
    34311 1ugw:G (1.7) BS03 peptide ? GO:0005575 ... P18670 12946359
    34312 1ugw:G (1.7) BS04 GAL ? GO:0005575 ... P18670 12946359 MOAD: Ka=1220M^-1
    34313 1ugx:A (1.6) BS01 peptide ? GO:0005575 ... P18670 12946359
    34314 1ugx:A (1.6) BS02 MGC ? GO:0005575 ... P18670 12946359 PDBbind: -logKd/Ki=5.91, Kd=1.24uM
    34315 1ugy:A (2.4) BS01 peptide ? GO:0005575 ... P18670 12946359
    34316 1ugy:A (2.4) BS02 peptide ? GO:0005575 ... P18670 12946359
    34317 1ugy:A (2.4) BS03 peptide ? GO:0005575 ... P18670 12946359
    34318 1ugy:A (2.4) BS04 GLC ? GO:0005575 ... P18670 12946359
    34319 1ugy:A (2.4) BS05 GLA ? GO:0005575 ... P18670 12946359
    34320 1ugy:C (2.4) BS01 peptide ? GO:0005575 ... P18670 12946359
    34321 1ugy:C (2.4) BS02 peptide ? GO:0005575 ... P18670 12946359
    34322 1ugy:C (2.4) BS03 peptide ? GO:0005575 ... P18670 12946359
    34323 1ugy:C (2.4) BS04 GLC ? GO:0005575 ... P18670 12946359
    34324 1ugy:C (2.4) BS05 GLA ? GO:0005575 ... P18670 12946359
    34325 1ugy:E (2.4) BS01 peptide ? GO:0005575 ... P18670 12946359
    34326 1ugy:E (2.4) BS02 peptide ? GO:0005575 ... P18670 12946359
    34327 1ugy:E (2.4) BS03 peptide ? GO:0005575 ... P18670 12946359
    34328 1ugy:E (2.4) BS04 BGC ? GO:0005575 ... P18670 12946359
    34329 1ugy:E (2.4) BS05 GLA ? GO:0005575 ... P18670 12946359
    34330 1ugy:G (2.4) BS01 peptide ? GO:0005575 ... P18670 12946359
    34331 1ugy:G (2.4) BS02 peptide ? GO:0005575 ... P18670 12946359
    34332 1ugy:G (2.4) BS03 peptide ? GO:0005575 ... P18670 12946359
    34333 1ugy:G (2.4) BS04 BGC ? GO:0005575 ... P18670 12946359
    34334 1ugy:G (2.4) BS05 GLA ? GO:0005575 ... P18670 12946359
    34335 1uh0:A (2.8) BS01 peptide ? GO:0005575 ... P18670 12946359
    34336 1uh0:A (2.8) BS02 peptide ? GO:0005575 ... P18670 12946359
    34337 1uh0:A (2.8) BS03 MGC ? GO:0005575 ... P18670 12946359
    34338 1uh0:C (2.8) BS01 peptide ? GO:0005575 ... P18670 12946359
    34339 1uh0:C (2.8) BS02 peptide ? GO:0005575 ... P18670 12946359
    34340 1uh0:C (2.8) BS03 MGC ? GO:0005575 ... P18670 12946359
    34341 1uh0:E (2.8) BS01 peptide ? GO:0005575 ... P18670 12946359
    34342 1uh0:E (2.8) BS02 peptide ? GO:0005575 ... P18670 12946359
    34343 1uh0:E (2.8) BS03 MGC ? GO:0005575 ... P18670 12946359
    34344 1uh0:G (2.8) BS01 peptide ? GO:0005575 ... P18670 12946359
    34345 1uh0:G (2.8) BS02 peptide ? GO:0005575 ... P18670 12946359
    34346 1uh0:G (2.8) BS03 MGC ? GO:0005575 ... P18670 12946359
    34347 1uh1:A (2.8) BS01 peptide ? GO:0005575 ... P18670 12946359
    34348 1uh1:A (2.8) BS02 peptide ? GO:0005575 ... P18670 12946359
    34349 1uh1:A (2.8) BS03 MGC ? GO:0005575 ... P18670 12946359
    34350 1uh1:C (2.8) BS01 peptide ? GO:0005575 ... P18670 12946359
    34351 1uh1:C (2.8) BS02 peptide ? GO:0005575 ... P18670 12946359
    34352 1uh1:C (2.8) BS03 AMG ? GO:0005575 ... P18670 12946359 PDBbind: -logKd/Ki=5.48, Kd=3.3uM
    34353 1uh1:E (2.8) BS01 peptide ? GO:0005575 ... P18670 12946359
    34354 1uh1:E (2.8) BS02 peptide ? GO:0005575 ... P18670 12946359
    34355 1uh1:E (2.8) BS03 AMG ? GO:0005575 ... P18670 12946359
    34356 1uh1:G (2.8) BS01 peptide ? GO:0005575 ... P18670 12946359
    34357 1uh1:G (2.8) BS02 peptide ? GO:0005575 ... P18670 12946359
    34358 1uh1:G (2.8) BS03 AMG ? GO:0005575 ... P18670 12946359
    34359 1uh2:A (2.0) BS01 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34360 1uh2:A (2.0) BS02 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34361 1uh2:A (2.0) BS03 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34362 1uh2:A (2.0) BS04 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34363 1uh2:A (2.0) BS05 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34364 1uh2:A (2.0) BS06 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34365 1uh2:A (2.0) BS07 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34366 1uh2:A (2.0) BS08 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34367 1uh2:A (2.0) BS09 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    34368 1uh2:A (2.0) BS10 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    34369 1uh2:A (2.0) BS11 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    34370 1uh3:A (2.6) BS01 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34371 1uh3:A (2.6) BS02 GLD 3.2.1.135 GO:0004553 ... Q60053 14687576
    34372 1uh3:A (2.6) BS03 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34373 1uh3:A (2.6) BS04 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34374 1uh3:A (2.6) BS05 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34375 1uh3:A (2.6) BS06 GLD 3.2.1.135 GO:0004553 ... Q60053 14687576
    34376 1uh3:A (2.6) BS07 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34377 1uh3:A (2.6) BS08 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34378 1uh3:A (2.6) BS09 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34379 1uh3:A (2.6) BS10 GLD 3.2.1.135 GO:0004553 ... Q60053 14687576
    34380 1uh3:A (2.6) BS11 ACI 3.2.1.135 GO:0004553 ... Q60053 14687576
    34381 1uh3:A (2.6) BS12 HSD 3.2.1.135 GO:0004553 ... Q60053 14687576
    34382 1uh3:A (2.6) BS13 ACI 3.2.1.135 GO:0004553 ... Q60053 14687576
    34383 1uh3:A (2.6) BS14 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    34384 1uh3:A (2.6) BS15 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    34385 1uh3:A (2.6) BS16 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    34386 1uh4:A (1.8) BS01 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34387 1uh4:A (1.8) BS02 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34388 1uh4:A (1.8) BS03 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34389 1uh4:A (1.8) BS04 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34390 1uh4:A (1.8) BS05 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34391 1uh4:A (1.8) BS06 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34392 1uh4:A (1.8) BS07 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34393 1uh4:A (1.8) BS08 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34394 1uh4:A (1.8) BS09 BGC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34395 1uh4:A (1.8) BS10 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34396 1uh4:A (1.8) BS11 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34397 1uh4:A (1.8) BS12 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34398 1uh4:A (1.8) BS13 GLC 3.2.1.135 GO:0004553 ... Q60053 14687576
    34399 1uh4:A (1.8) BS14 CA 3.2.1.135 GO:0004553 ... Q60053 14687576
    34400 1uh4:A (1.8) BS15 CA 3.2.1.135 GO:0004553 ... Q60053 14687576

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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