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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    33601 1tx8:A (1.7) BS02 AM4 3.4.21.4 GO:0004175 ... P00760 15380220 MOAD: Ki=1800uM
    33602 1txc:A (2.3) BS01 2AN ? GO:0004864 ... Q6T6J0 N/A
    33603 1txc:A (2.3) BS02 2AN ? GO:0004864 ... Q6T6J0 N/A
    33604 1txc:A (2.3) BS03 2AN ? GO:0004864 ... Q6T6J0 N/A
    33605 1txc:B (2.3) BS01 2AN ? GO:0004864 ... Q6T6J0 N/A
    33606 1txc:B (2.3) BS02 2AN ? GO:0004864 ... Q6T6J0 N/A
    33607 1txc:B (2.3) BS03 2AN ? GO:0004864 ... Q6T6J0 N/A
    33608 1txc:B (2.3) BS04 2AN ? GO:0004864 ... Q6T6J0 N/A
    33609 1txf:A (2.1) BS01 GLU ? GO:0015276 ... P22756 15721240 MOAD: Ki=57.2nM
    33610 1txg:A (1.7) BS01 GOL 1.1.1.- GO:0005737 ... O29390 15557260
    33611 1txg:B (1.7) BS01 GOL 1.1.1.- GO:0005737 ... O29390 15557260
    33612 1txx:A (2.2) BS01 CU 1.8.-.- GO:0005515 ... P0AA25 10489448
    33613 1txz:A (2.05) BS01 APR 3.1.3.84 GO:0005575 ... Q04299 15722447
    33614 1ty2:A (2.0) BS01 ZN ? GO:0005576 ... Q7BAE3 15247241
    33615 1ty2:B (2.0) BS01 ZN ? GO:0005576 ... Q7BAE3 15247241
    33616 1ty2:C (2.0) BS01 ZN ? GO:0005576 ... Q7BAE3 15247241
    33617 1ty8:A (2.1) BS01 ADP 3.1.3.84 GO:0005575 ... Q04299 N/A
    33618 1tye:A (2.9) BS01 CA ? GO:0007155 ... P08514 15378069
    33619 1tye:A (2.9) BS02 CA ? GO:0007155 ... P08514 15378069
    33620 1tye:A (2.9) BS03 CA ? GO:0007155 ... P08514 15378069
    33621 1tye:A (2.9) BS04 CA ? GO:0007155 ... P08514 15378069
    33622 1tye:C (2.9) BS01 CA ? GO:0007155 ... P08514 15378069
    33623 1tye:C (2.9) BS02 CA ? GO:0007155 ... P08514 15378069
    33624 1tye:C (2.9) BS03 CA ? GO:0007155 ... P08514 15378069
    33625 1tye:C (2.9) BS04 CA ? GO:0007155 ... P08514 15378069
    33626 1tye:E (2.9) BS01 CA ? GO:0007155 ... P08514 15378069
    33627 1tye:E (2.9) BS02 CA ? GO:0007155 ... P08514 15378069
    33628 1tye:E (2.9) BS03 CA ? GO:0007155 ... P08514 15378069
    33629 1tye:E (2.9) BS04 CA ? GO:0007155 ... P08514 15378069
    33630 1tyg:A (3.15) BS01 PO4 2.8.1.10 GO:0005737 ... O31618 15362849
    33631 1tyg:C (3.15) BS01 PO4 2.8.1.10 GO:0005737 ... O31618 15362849
    33632 1tyl:B (1.9) BS01 peptide ? GO:0005179 ... P01308 8090735
    33633 1tyl:B (1.9) BS02 peptide ? GO:0005179 ... P01308 8090735
    33634 1tyn:A (2.0) BS01 CTA 3.4.21.4 GO:0004175 ... P00760 N/A PDBbind: -logKd/Ki=9.70, Ki=0.2nM
    33635 1typ:A (2.8) BS01 FAD 1.8.1.12 GO:0004362 ... P39040 8477734
    33636 1typ:A (2.8) BS02 NAP 1.8.1.12 GO:0004362 ... P39040 8477734
    33637 1typ:A (2.8) BS03 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    33638 1typ:A (2.8) BS04 SPD 1.8.1.12 GO:0004362 ... P39040 8477734
    33639 1typ:A (2.8) BS05 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    33640 1typ:A (2.8) BS06 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    33641 1typ:B (2.8) BS01 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    33642 1typ:B (2.8) BS02 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    33643 1typ:B (2.8) BS03 FAD 1.8.1.12 GO:0004362 ... P39040 8477734
    33644 1typ:B (2.8) BS04 NAP 1.8.1.12 GO:0004362 ... P39040 8477734
    33645 1typ:B (2.8) BS05 GSH 1.8.1.12 GO:0004362 ... P39040 8477734
    33646 1typ:B (2.8) BS06 SPD 1.8.1.12 GO:0004362 ... P39040 8477734
    33647 1tyq:A (2.55) BS01 ATP ? GO:0003779 ... P61157 15505213
    33648 1tyq:B (2.55) BS01 ATP ? GO:0003779 ... A7MB62 15505213
    33649 1tyr:A (1.8) BS01 9CR ? GO:0005179 ... P02766 8536704 MOAD: Kd=0.1uM
    33650 1tyr:B (1.8) BS01 9CR ? GO:0005179 ... P02766 8536704 MOAD: Kd=0.1uM
    33651 1tys:A (1.8) BS01 TMP 2.1.1.45 GO:0000287 ... P0A884 8312270 PDBbind: -logKd/Ki=5.49, Kd=3.27uM
    33652 1tys:A (1.8) BS02 DHF 2.1.1.45 GO:0000287 ... P0A884 8312270 MOAD: Kd=3.27uM
    33653 1tyt:A (2.6) BS01 FAD 1.8.1.12 GO:0004362 ... P39040 15299452
    33654 1tyt:B (2.6) BS01 FAD 1.8.1.12 GO:0004362 ... P39040 15299452
    33655 1tz8:A (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    33656 1tz8:B (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    33657 1tz8:C (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    33658 1tz8:D (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    33659 1tzn:A (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33660 1tzn:A (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33661 1tzn:B (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33662 1tzn:B (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33663 1tzn:C (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33664 1tzn:C (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33665 1tzn:D (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33666 1tzn:D (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33667 1tzn:E (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33668 1tzn:E (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33669 1tzn:F (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33670 1tzn:F (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33671 1tzn:G (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33672 1tzn:G (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33673 1tzn:H (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33674 1tzn:H (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33675 1tzn:I (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33676 1tzn:I (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33677 1tzn:J (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33678 1tzn:J (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33679 1tzn:K (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33680 1tzn:K (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33681 1tzn:L (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33682 1tzn:L (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33683 1tzn:M (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33684 1tzn:M (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33685 1tzn:O (4.3) BS01 CA ? GO:0005576 ... P13423 15326297
    33686 1tzn:O (4.3) BS02 CA ? GO:0005576 ... P13423 15326297
    33687 1tzo:A (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33688 1tzo:A (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33689 1tzo:B (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33690 1tzo:B (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33691 1tzo:C (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33692 1tzo:C (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33693 1tzo:D (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33694 1tzo:D (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33695 1tzo:E (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33696 1tzo:E (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33697 1tzo:F (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33698 1tzo:F (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33699 1tzo:G (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33700 1tzo:G (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33701 1tzo:H (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33702 1tzo:H (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33703 1tzo:I (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33704 1tzo:I (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33705 1tzo:J (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33706 1tzo:J (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33707 1tzo:K (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33708 1tzo:K (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33709 1tzo:L (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33710 1tzo:L (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33711 1tzo:M (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33712 1tzo:M (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33713 1tzo:O (3.6) BS01 CA ? GO:0005576 ... P13423 15326297
    33714 1tzo:O (3.6) BS02 CA ? GO:0005576 ... P13423 15326297
    33715 1tzs:A (2.35) BS01 peptide 3.4.23.34 GO:0004190 ... P14091 15342244
    33716 1tzy:A (1.9) BS01 PO4 ? GO:0000786 ... P02263 16511091
    33717 1tzy:B (1.9) BS01 PO4 ? GO:0000786 ... P0C1H5 16511091
    33718 1tzy:C (1.9) BS01 PO4 ? GO:0000122 ... P84229 16511091
    33719 1tzy:E (1.9) BS01 PO4 ? GO:0000786 ... P02263 16511091
    33720 1u08:A (2.35) BS01 PLP 2.6.1.88 GO:0003824 ... P77806 15280032
    33721 1u08:B (2.35) BS01 PLP 2.6.1.88 GO:0003824 ... P77806 15280032
    33722 1u0b:B (2.3) BS01 rna 6.1.1.16 GO:0000166 ... P21888 15489861 PDBbind: Kd=0.27uM
    33723 1u0b:B (2.3) BS02 ZN 6.1.1.16 GO:0000166 ... P21888 15489861
    33724 1u0c:A (2.5) BS01 dna 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=25nM
    33725 1u0c:A (2.5) BS02 dna 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=25nM
    33726 1u0c:B (2.5) BS01 dna 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=25nM
    33727 1u0c:B (2.5) BS02 dna 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=25nM
    33728 1u0d:A (2.9) BS01 dna 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=2.0nM
    33729 1u0d:A (2.9) BS02 dna 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=2.0nM
    33730 1u0d:B (2.9) BS01 dna 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=2.0nM
    33731 1u0d:B (2.9) BS02 dna 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=2.0nM
    33732 1u0f:A (1.6) BS01 G6P 5.3.1.9 GO:0001701 ... P06745 15342241
    33733 1u0f:A (1.6) BS02 G6Q 5.3.1.9 GO:0001701 ... P06745 15342241
    33734 1u0g:A (1.7) BS01 E4P 5.3.1.9 GO:0001701 ... P06745 15342241 PDBbind: -logKd/Ki=6.15, Ki=0.7uM
    33735 1u0g:B (1.7) BS01 E4P 5.3.1.9 GO:0001701 ... P06745 15342241 PDBbind: -logKd/Ki=6.15, Ki=0.7uM
    33736 1u0h:C (2.9) BS01 MG ? GO:0003924 ... P04896 15591060
    33737 1u0h:C (2.9) BS02 GSP ? GO:0003924 ... P04896 15591060
    33738 1u0l:A (2.8) BS01 ZN 3.6.1.- GO:0003924 ... Q9X242 15331784
    33739 1u0l:A (2.8) BS02 GDP 3.6.1.- GO:0003924 ... Q9X242 15331784
    33740 1u0l:B (2.8) BS01 ZN 3.6.1.- GO:0003924 ... Q9X242 15331784
    33741 1u0l:B (2.8) BS02 GDP 3.6.1.- GO:0003924 ... Q9X242 15331784
    33742 1u0l:C (2.8) BS01 ZN 3.6.1.- GO:0003924 ... Q9X242 15331784
    33743 1u0l:C (2.8) BS02 GDP 3.6.1.- GO:0003924 ... Q9X242 15331784
    33744 1u0x:A (1.45) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 15258143
    33745 1u0x:A (1.45) BS02 XE 1.7.6.1 GO:0005576 ... Q94734 15258143
    33746 1u0x:A (1.45) BS03 XE 1.7.6.1 GO:0005576 ... Q94734 15258143
    33747 1u10:A (2.4) BS01 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33748 1u10:A (2.4) BS02 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33749 1u10:B (2.4) BS01 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33750 1u10:B (2.4) BS02 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33751 1u10:C (2.4) BS01 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33752 1u10:C (2.4) BS02 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33753 1u10:D (2.4) BS01 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33754 1u10:D (2.4) BS02 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33755 1u10:E (2.4) BS01 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33756 1u10:E (2.4) BS02 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33757 1u10:F (2.4) BS01 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33758 1u10:F (2.4) BS02 ZN 3.4.24.- GO:0000270 ... P0C0T5 15292190
    33759 1u13:A (2.01) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 N/A
    33760 1u17:A (1.7) BS01 HEM ? GO:0005576 ... Q26239 N/A
    33761 1u17:B (1.7) BS01 HEM ? GO:0005576 ... Q26239 N/A
    33762 1u18:A (1.96) BS01 HEM ? GO:0005576 ... Q26239 N/A
    33763 1u18:A (1.96) BS02 HSM ? GO:0005576 ... Q26239 N/A
    33764 1u18:B (1.96) BS01 HEM ? GO:0005576 ... Q26239 N/A
    33765 1u18:B (1.96) BS02 HSM ? GO:0005576 ... Q26239 N/A
    33766 1u19:A (2.2) BS01 ZN ? GO:0000139 ... P02699 15327956
    33767 1u19:A (2.2) BS02 ZN ? GO:0000139 ... P02699 15327956
    33768 1u19:A (2.2) BS03 ZN ? GO:0000139 ... P02699 15327956
    33769 1u19:A (2.2) BS04 ZN ? GO:0000139 ... P02699 15327956
    33770 1u19:A (2.2) BS05 RET ? GO:0000139 ... P02699 15327956
    33771 1u19:B (2.2) BS01 ZN ? GO:0000139 ... P02699 15327956
    33772 1u19:B (2.2) BS02 ZN ? GO:0000139 ... P02699 15327956
    33773 1u19:B (2.2) BS03 ZN ? GO:0000139 ... P02699 15327956
    33774 1u19:B (2.2) BS04 RET ? GO:0000139 ... P02699 15327956
    33775 1u1b:A (2.0) BS01 PAX 4.6.1.18 GO:0003676 ... P61823 15969595 MOAD: Kd=16nM
    PDBbind: -logKd/Ki=7.80, Kd=16nM
    33776 1u1b:B (2.0) BS01 PAX 4.6.1.18 GO:0003676 ... P61823 15969595 MOAD: Kd=16nM
    33777 1u1c:A (2.2) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    33778 1u1c:A (2.2) BS02 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33779 1u1c:A (2.2) BS03 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33780 1u1c:B (2.2) BS01 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33781 1u1c:B (2.2) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    33782 1u1c:B (2.2) BS03 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33783 1u1c:C (2.2) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    33784 1u1c:C (2.2) BS02 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33785 1u1c:C (2.2) BS03 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33786 1u1c:D (2.2) BS01 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33787 1u1c:D (2.2) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    33788 1u1c:D (2.2) BS03 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33789 1u1c:E (2.2) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    33790 1u1c:E (2.2) BS02 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33791 1u1c:E (2.2) BS03 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33792 1u1c:F (2.2) BS01 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33793 1u1c:F (2.2) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    33794 1u1c:F (2.2) BS03 BAU 2.4.2.3 GO:0003824 ... P12758 15983408 MOAD: Ki~4300nM
    33795 1u1d:A (2.001) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    33796 1u1d:A (2.001) BS02 181 2.4.2.3 GO:0003824 ... P12758 15983408
    33797 1u1d:A (2.001) BS03 181 2.4.2.3 GO:0003824 ... P12758 15983408
    33798 1u1d:B (2.001) BS01 181 2.4.2.3 GO:0003824 ... P12758 15983408
    33799 1u1d:B (2.001) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    33800 1u1d:B (2.001) BS03 181 2.4.2.3 GO:0003824 ... P12758 15983408
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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